mRNA_H-paniculata_contig27945.7636.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27945.7636.1
Unique NamemRNA_H-paniculata_contig27945.7636.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27945.7636.1 vs. uniprot
Match: A0A6H5K4T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T3_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.210e-10
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   13 ENVDVRYHFIRELIARKVLRVEYKTGEDQPADILTKSLERGSFERHRRFLINL 171
            +++DVR+HFIREL+ RK + + + T E Q AD LTK++ + SF  HR F++NL
Sbjct:   30 KHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNL 82
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BLAST of mRNA_H-paniculata_contig27945.7636.1 vs. uniprot
Match: A0A6H5JNH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH6_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.820e-10
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   13 ENVDVRYHFIRELIARKVLRVEYKTGEDQPADILTKSLERGSFERHRRFLINL 171
            +++DVR+HFIREL+ RK + + + T E Q AD LTK++ + SF  HR F++NL
Sbjct:   66 KHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNL 118
[Close]
BLAST of mRNA_H-paniculata_contig27945.7636.1 vs. uniprot
Match: A0A6H5KIJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ7_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.650e-9
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:   13 ENVDVRYHFIRELIARKVLRVEYKTGEDQPADILTKSLERGSFERHRRFLINL 171
            +++DVR+HF+REL+ RK + V +     Q AD LTKSL + SFE HR F++NL
Sbjct:  174 KHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDSFESHREFVMNL 226
[Close]
BLAST of mRNA_H-paniculata_contig27945.7636.1 vs. uniprot
Match: A0A6H5JT91_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT91_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.320e-9
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   13 ENVDVRYHFIRELIARKVLRVEYKTGEDQPADILTKSLERGSFERHRRFLINL 171
            +++DVR+HFIREL+ RK + + + T E Q AD LTK++ + SF  HR F++NL
Sbjct:  377 KHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNL 429
[Close]
BLAST of mRNA_H-paniculata_contig27945.7636.1 vs. uniprot
Match: A0A5E3XJL0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Peniophora sp. CBMAI 1063 TaxID=718367 RepID=A0A5E3XJL0_9AGAM)

HSP 1 Score: 60.5 bits (145), Expect = 3.350e-9
Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   13 ENVDVRYHFIRELIARKVLRVEYKTGEDQPADILTKSLERGSFERHR 153
            ++VD+RYH+I+E+IAR ++ V Y  GED PAD+LTK+L R  FE+ R
Sbjct:  474 KHVDIRYHYIQEVIARGLVEVTYIPGEDNPADLLTKNLARTKFEKFR 520
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BLAST of mRNA_H-paniculata_contig27945.7636.1 vs. uniprot
Match: A0A0G4ED01_VITBC (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ED01_VITBC)

HSP 1 Score: 60.5 bits (145), Expect = 3.350e-9
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   16 NVDVRYHFIRELIARKVLRVEYKTGEDQPADILTKSLERGSFERHRRFLINLP 174
            +VDVRYH +REL+   +LRV +  G D PADILTK ++R + E+H R L  +P
Sbjct:  520 HVDVRYHHVRELVGDGLLRVVHIAGADNPADILTKPMDRATLEKHLRTLKMVP 572
[Close]
BLAST of mRNA_H-paniculata_contig27945.7636.1 vs. uniprot
Match: A0A6H5KBS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS9_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.360e-9
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   13 ENVDVRYHFIRELIARKVLRVEYKTGEDQPADILTKSLERGSFERHRRFLINL 171
            +++DVR+HFIREL+ RK + + + T E Q AD LTK++ + SF  HR F++NL
Sbjct:  212 KHIDVRHHFIRELVMRKEISITHVTSEFQHADFLTKAISKESFALHRYFVMNL 264
[Close]
BLAST of mRNA_H-paniculata_contig27945.7636.1 vs. uniprot
Match: A0A6H5K9U4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U4_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.370e-9
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   13 ENVDVRYHFIRELIARKVLRVEYKTGEDQPADILTKSLERGSFERHRRFLINL 171
            +++DVR+HFIREL+ RK + + + T E Q AD LTK++ + SF  HR F++NL
Sbjct:  726 KHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNL 778
[Close]
BLAST of mRNA_H-paniculata_contig27945.7636.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.390e-9
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   13 ENVDVRYHFIRELIARKVLRVEYKTGEDQPADILTKSLERGSFERHRRFLINL 171
            +++DVR+HFIREL+ RK + + + T E Q AD LTK++ + SF  HR F++NL
Sbjct: 1419 KHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESFALHRDFVMNL 1471
[Close]
BLAST of mRNA_H-paniculata_contig27945.7636.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 5.800e-9
Identity = 25/53 (47.17%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:   13 ENVDVRYHFIRELIARKVLRVEYKTGEDQPADILTKSLERGSFERHRRFLINL 171
            +++DVR+HFIREL+ RK + + + T E Q  D LTK++ + SF  HR F++NL
Sbjct:  116 KHIDVRHHFIRELVERKEISITHVTSEFQHVDSLTKAISKESFALHRDFVMNL 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27945.7636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4T3_9PHAE1.210e-1049.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNH6_9PHAE2.820e-1049.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIJ7_9PHAE1.650e-950.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT91_9PHAE3.320e-949.06Integrase catalytic domain-containing protein n=1 ... [more]
A0A5E3XJL0_9AGAM3.350e-955.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0G4ED01_VITBC3.350e-950.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBS9_9PHAE3.360e-949.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9U4_9PHAE3.370e-949.06Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JHY5_9PHAE3.390e-949.06Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JTT9_9PHAE5.800e-947.17Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27945contigH-paniculata_contig27945:689..868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.4938357-CDS-H-paniculata_contig27945:688..8681622929845.4938357-CDS-H-paniculata_contig27945:688..868Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27945 689..868 -
1691481036.667584-CDS-H-paniculata_contig27945:688..8681691481036.667584-CDS-H-paniculata_contig27945:688..868Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27945 689..868 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27945.7636.1prot_H-paniculata_contig27945.7636.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27945 689..868 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27945.7636.1

>prot_H-paniculata_contig27945.7636.1 ID=prot_H-paniculata_contig27945.7636.1|Name=mRNA_H-paniculata_contig27945.7636.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
WGGRENVDVRYHFIRELIARKVLRVEYKTGEDQPADILTKSLERGSFERH
RRFLINLPE*
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mRNA from alignment at H-paniculata_contig27945:689..868-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27945.7636.1 ID=mRNA_H-paniculata_contig27945.7636.1|Name=mRNA_H-paniculata_contig27945.7636.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at H-paniculata_contig27945:689..868- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGGAGGGAGGGAGAACGTAGACGTAAGATATCACTTCATTCGAGAGTT
GATTGCGAGGAAAGTTTTAAGGGTAGAGTACAAGACGGGTGAGGACCAAC
CGGCTGACATTCTGACTAAATCGCTCGAGCGCGGGTCCTTTGAACGACAT
CGTCGTTTCTTGATAAATTTGCCTGAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig27945:689..868-

>mRNA_H-paniculata_contig27945.7636.1 ID=mRNA_H-paniculata_contig27945.7636.1|Name=mRNA_H-paniculata_contig27945.7636.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig27945:689..868- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGGAGGGAGGGAGAACGTAGACGTAAGATATCACTTCATTCGAGAGTT
GATTGCGAGGAAAGTTTTAAGGGTAGAGTACAAGACGGGTGAGGACCAAC
CGGCTGACATTCTGACTAAATCGCTCGAGCGCGGGTCCTTTGAACGACAT
CGTCGTTTCTTGATAAATTTGCCTGAATGATGGGGAGGGAGGGAGAACGT
AGACGTAAGATATCACTTCATTCGAGAGTTGATTGCGAGGAAAGTTTTAA
GGGTAGAGTACAAGACGGGTGAGGACCAACCGGCTGACATTCTGACTAAA
TCGCTCGAGCGCGGGTCCTTTGAACGACATCGTCGTTTCTTGATAAATTT
GCCTGAATGA
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