prot_H-paniculata_contig2794.7633.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2794.7633.1
Unique Nameprot_H-paniculata_contig2794.7633.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length190
Homology
BLAST of mRNA_H-paniculata_contig2794.7633.1 vs. uniprot
Match: D8LD41_ECTSI (SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD41_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 9.340e-68
Identity = 114/154 (74.03%), Postives = 127/154 (82.47%), Query Frame = 0
Query:   45 QGRSLVA--GTRVLS-------STPEKQSYTEKQAQTGRPLSPHVTIYDFPAAALSSIANRVTGIALVGGLYGIAGASLMGCDAPVMMSTLGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPQTLQNADVAKASYALFGASGVLSLGLAIV 189
            +GR LVA  G+  LS       S  EK+SYT +QA+TGRP+SPHVTIYDFP AALSSIANRVTG+ALV GLYGI+GA+L+GCDA  +MS LGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMP+TLQ A VAK SYAL G SG +SLGLA V
Sbjct:   23 KGRPLVAAVGSHALSRSSSSSASDKEKESYTARQARTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGATLVGCDAAGLMSALGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPETLQTAGVAKTSYALLGVSGAVSLGLAAV 176          
BLAST of mRNA_H-paniculata_contig2794.7633.1 vs. uniprot
Match: A0A835YMP1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP1_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.170e-46
Identity = 78/145 (53.79%), Postives = 102/145 (70.34%), Query Frame = 0
Query:   45 QGRSLVAGTRVLSSTPEKQSYTEKQAQTGRPLSPHVTIYDFPAAALSSIANRVTGIALVGGLYGIAGASLMGCDAPVMMSTLGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPQTLQNADVAKASYALFGASGVLSLGLAIV 189
            Q  +    TR+LS       Y E+Q +TGRP+SPHVT Y FP  A+SSI NRVTG+ LVGGLYGI   +L+G D   +M+ LG + V P  K+ V+FPL+YHYLGA RHT+WD+ P+T+ NA VA++SY LFGA+G L+L  A+V
Sbjct:   16 QAGATAGSTRILS------DYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTLLTAVV 154          
BLAST of mRNA_H-paniculata_contig2794.7633.1 vs. uniprot
Match: A0A836CCH7_9STRA (Transmembrane subunit of succinate dehydrogenase/Fumarate reductase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCH7_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.080e-41
Identity = 71/127 (55.91%), Postives = 90/127 (70.87%), Query Frame = 0
Query:   61 EKQSYTEKQAQTGRPLSPHVTIYDFPAAALSSIANRVTGIALVGGLYGIAGASLMGCDAPVMMSTLGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPQTLQNADVAKASYALFGASGVLSLGLA 187
            E  SY E Q + GRP+SPHVT Y FP AA+SSI NR+TG+ALVGGLYGI   SL+G DA  +MS +  S +   VKL V+FPL+YHY  A RHT+WD+ P+T++N  V K+S  +F A+G LSL  A
Sbjct:   11 ESHSYDELQQRRGRPISPHVTNYRFPIAAISSITNRITGVALVGGLYGIGALSLVGVDAQHIMSVIHDSILAGPVKLVVTFPLIYHYFAAARHTIWDFYPETVENKSVEKSSLLIFAAAGSLSLAAA 137          
BLAST of mRNA_H-paniculata_contig2794.7633.1 vs. uniprot
Match: A0A7S1XVJ2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVJ2_9STRA)

HSP 1 Score: 145 bits (365), Expect = 9.890e-41
Identity = 82/174 (47.13%), Postives = 109/174 (62.64%), Query Frame = 0
Query:   28 TVKTLLTALARL-PCSLSQGRSLVAGTRV-----------LSSTPEKQSYTEKQAQTGRPLSPHVTIYDFPAAALSSIANRVTGIALVGGLYGIAGASLMGCDAPVMMSTLGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPQTLQNADVAKASYALFGASGVLSLGLAIV 189
            +V  L  ALAR+ P      RS + G RV           L++ P ++ Y+ +Q +TGRP+SPHVTIY FPA A+SSI+ RVTG  L  GL GI   +L+G D P +MS +GSS +GP  K AVS+ LVYH+ GA RH VWD  P+ L+N  V + S  + GA+GV+S GLA +
Sbjct:    6 SVFRLSPALARIQPTRQLALRSALLGRRVTAPSALVPLRDLATAPSEEKYSARQKKTGRPVSPHVTIYAFPAVAISSISVRVTGCILSVGLGGIGALALVGVDTPALMSAVGSSAIGPLAKFAVSYSLVYHFFGAARHYVWDQSPEMLENDQVYQTSLGIMGAAGVISAGLAFM 179          
BLAST of mRNA_H-paniculata_contig2794.7633.1 vs. uniprot
Match: A0A7S2D072_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D072_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.290e-38
Identity = 69/124 (55.65%), Postives = 89/124 (71.77%), Query Frame = 0
Query:   61 EKQSYTEKQAQTGRPLSPHVTIYDFPAAALSSIANRVTGIALVGGLYGIAGASLMGCDAPVMMSTLGSSG-VGPAVKLAVSFPLVYHYLGAVRHTVWDYMPQTLQNADVAKASYALFGASGVLS 183
            +KQ+Y+E+ A  G P+SPHVTIY FP  ALSSI  R+TG+ L  G  GIAG +L+G D P MMSTLG  G +G   K +V+FP+ YH+LG  RH VWD+MP+ +QN  V +AS+ALFG S VL+
Sbjct:   35 QKQTYSERMAAKGLPVSPHVTIYAFPVVALSSITVRITGVLLSVGCTGIAGGALVGADVPAMMSTLGDMGALGYLAKFSVAFPVSYHFLGGCRHAVWDHMPEYVQNGAVEQASWALFGGSAVLT 158          
BLAST of mRNA_H-paniculata_contig2794.7633.1 vs. uniprot
Match: A0A7S1YU13_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YU13_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.950e-38
Identity = 70/133 (52.63%), Postives = 92/133 (69.17%), Query Frame = 0
Query:   61 EKQSYTEKQAQTGRPLSPHVTIYDFPAAALSSIANRVTGIALVGGLYGIAGASLMGCD--APVMMSTLGSSG--VGPAVKLAVSFPLVYHYLGAVRHTVWDYMPQTLQNADVAKASYALFGASGVLSLGLAIV 189
            +KQ+Y+E+ A+TGRP+SPH+TIY FP  ALSSI NRVTG+AL  G  G+    L+G    A  ++  +GSSG  VG   K AV+FP VYHY+GA+RH  WD  P+ L+N DV KAS ALFG+S ++S G   +
Sbjct:    5 KKQNYSERMARTGRPVSPHLTIYSFPVGALSSITNRVTGVALTFGAAGVGAIELLGGSGAAAGLLQDIGSSGALVGCTAKFAVAFPCVYHYIGAIRHLAWDNRPELLENTDVEKASIALFGSSLLISAGFMFI 137          
BLAST of mRNA_H-paniculata_contig2794.7633.1 vs. uniprot
Match: A0A7S2HYL2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HYL2_9STRA)

HSP 1 Score: 135 bits (340), Expect = 7.360e-37
Identity = 76/173 (43.93%), Postives = 105/173 (60.69%), Query Frame = 0
Query:   23 PFTSCTVKTLLTALARL--PCSLSQGRSLVAGTRVLSSTPEKQSYTEKQAQTGRPLSPHVTIYDFPAAALSSIANRVTGIALVGGLYGIAGASLMGCDAPVM--MSTLGSSG--VGPAVKLAVSFPLVYHYLGAVRHTVWDYMPQTLQNADVAKASYALFGASGVLSLGLAIV 189
            P TS  ++ L+     L      S  RS+   ++  +   +KQ+Y E+ A+TGRP+SPH+TIY FP  A+SSI NRVTG AL  G  G+    L+G     M  M  + +SG  V  + K AV+FP ++HY GA+RH  WDYMP+ L N DV KAS+ALFG+S V+S+G   +
Sbjct:   15 PSTSALLRPLVQRQIALHNAAKCSSVRSMTILSKESAEEYKKQNYKERMAKTGRPVSPHLTIYHFPVGAMSSITNRVTGCALTFGAAGVGAIELVGGSGAAMGLMQDIAASGGLVAASAKFAVAFPCIFHYFGAIRHIAWDYMPEYLNNPDVEKASWALFGSSLVVSVGFMFI 187          
BLAST of mRNA_H-paniculata_contig2794.7633.1 vs. uniprot
Match: W7TK90_9STRA (Succinate dehydrogenase cytochrome b subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TK90_9STRA)

HSP 1 Score: 130 bits (328), Expect = 4.210e-35
Identity = 67/127 (52.76%), Postives = 88/127 (69.29%), Query Frame = 0
Query:   58 STPEKQSYTEKQAQTGRPLSPHVTIYDFPAAALSSIANRVTGIALVGGLYGIAGASLMGCDAPVMMSTLGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPQTLQNADVAKASYALFGASGVLSL 184
            ST  K++YTE+QA+TGRP+SPHVTIY FP  AL+SI+ RVTG  L  GL GI+  +L G D P++MS+LG+S VG   K+   FPL++HY   +RH  WD  P  L N  VA+ASY L G++  +SL
Sbjct:   41 STASKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFFWDNNPNFLNNKGVAEASYILLGSTVAISL 167          
BLAST of mRNA_H-paniculata_contig2794.7633.1 vs. uniprot
Match: A0A448Z9H1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9H1_9STRA)

HSP 1 Score: 130 bits (326), Expect = 6.330e-35
Identity = 71/134 (52.99%), Postives = 88/134 (65.67%), Query Frame = 0
Query:   61 EKQSYTEKQAQTGRPLSPHVTIYDFPAAALSSIANRVTGIALVGGLYGIAGASLMGCDAPVM--MSTLGSSG--VGPAVKLAVSFPLVYHYLGAVRHTVWDYMPQT-LQNADVAKASYALFGASGVLSLGLAIV 189
            +KQ+YTE+  +TGRP+SPHVTIY  P  A +SI  RVTGI L  G +G+    LMG     +  M ++GSSG  V    K AV+FPLVYHYLGAV H VWDY P   L N DV K+S AL G++G++SLG   V
Sbjct:   40 KKQNYTERMQKTGRPVSPHVTIYALPVPAFASITTRVTGIMLSFGAFGVGAIDLMGGPGASLSLMESIGSSGFLVASPAKFAVAFPLVYHYLGAVXHFVWDYFPDKYLNNEDVQKSSIALIGSAGLISLGFVFV 173          
BLAST of mRNA_H-paniculata_contig2794.7633.1 vs. uniprot
Match: A0A5D6YA41_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YA41_9STRA)

HSP 1 Score: 127 bits (318), Expect = 9.860e-34
Identity = 68/128 (53.12%), Postives = 83/128 (64.84%), Query Frame = 0
Query:   63 QSYTEKQAQTGRPLSPHVTIYDFPAAALSSIANRVTGIALVGGLYGIAGASLMGCDAPVMMSTLGSS--GVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPQTLQNADVAKASYALFGASGVLSLGLAI 188
            Q+Y+E+QA  GRP+SPHV IY FP  ALSSI NR TG+AL  G  G A  + +G D P ++     +  G  PA KL V+FPL YH L  VRH VWD  PQ + N D  K+SYA+ GAS VLSLG A+
Sbjct:   32 QTYSERQAALGRPVSPHVEIYAFPVTALSSITNRATGVALTIGFAGGAALAAVGADVPSLIYAAQDTIPGFAPASKLLVAFPLTYHMLNGVRHGVWDKAPQLINNIDGPKSSYAVIGASLVLSLGAAL 159          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2794.7633.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD41_ECTSI9.340e-6874.03SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ec... [more]
A0A835YMP1_9STRA1.170e-4653.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CCH7_9STRA2.080e-4155.91Transmembrane subunit of succinate dehydrogenase/F... [more]
A0A7S1XVJ2_9STRA9.890e-4147.13Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2D072_9STRA2.290e-3855.65Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1YU13_9STRA2.950e-3852.63Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2HYL2_9STRA7.360e-3743.93Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
W7TK90_9STRA4.210e-3552.76Succinate dehydrogenase cytochrome b subunit n=2 T... [more]
A0A448Z9H1_9STRA6.330e-3552.99Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A5D6YA41_9STRA9.860e-3453.13Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014314Succinate dehydrogenase, cytochrome b556 subunitPIRSFPIRSF000178SDH_cyt_b560coord: 23..189
e-value: 7.6E-25
score: 85.5
IPR014314Succinate dehydrogenase, cytochrome b556 subunitTIGRFAMTIGR02970TIGR02970coord: 74..187
e-value: 2.5E-15
score: 54.7
IPR034804Fumarate reductase/succinate dehydrogenase, transmembrane subunitGENE3D1.20.1300.10coord: 56..189
e-value: 6.5E-30
score: 106.1
IPR034804Fumarate reductase/succinate dehydrogenase, transmembrane subunitSUPERFAMILY81343Fumarate reductase respiratory complex transmembrane subunitscoord: 68..188
IPR000701Succinate dehydrogenase/fumarate reductase type B, transmembrane subunitPFAMPF01127Sdh_cytcoord: 73..183
e-value: 2.6E-14
score: 53.3
NoneNo IPR availablePANTHERPTHR10978SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNITcoord: 60..188
NoneNo IPR availablePANTHERPTHR10978:SF5SUCCINATE DEHYDROGENASE CYTOCHROME B560 SUBUNIT, MITOCHONDRIALcoord: 60..188
NoneNo IPR availableTMHMMTMhelixcoord: 171..188
NoneNo IPR availableTMHMMTMhelixcoord: 129..151
NoneNo IPR availableTMHMMTMhelixcoord: 92..114

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2794contigH-paniculata_contig2794:4433..6926 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2794.7633.1mRNA_H-paniculata_contig2794.7633.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2794 3693..7111 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2794.7633.1 ID=prot_H-paniculata_contig2794.7633.1|Name=mRNA_H-paniculata_contig2794.7633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
MLLPVTVHSYLPNNIFGCMPLRPFTSCTVKTLLTALARLPCSLSQGRSLV
AGTRVLSSTPEKQSYTEKQAQTGRPLSPHVTIYDFPAAALSSIANRVTGI
ALVGGLYGIAGASLMGCDAPVMMSTLGSSGVGPAVKLAVSFPLVYHYLGA
VRHTVWDYMPQTLQNADVAKASYALFGASGVLSLGLAIV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014314Succ_DH_cytb556
IPR034804SQR/QFR_C/D
IPR000701SuccDH_FuR_B_TM-su