mRNA_H-paniculata_contig2794.7633.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2794.7633.1
Unique NamemRNA_H-paniculata_contig2794.7633.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2794.7633.1 vs. uniprot
Match: D8LD41_ECTSI (SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD41_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 9.610e-64
Identity = 114/154 (74.03%), Postives = 127/154 (82.47%), Query Frame = 3 
Query:  318 QGRSLVA--GTRVLS-------STPEKQSYTEKQAQTGRPLSPHVTIYDFPAAALSSIANRVTGIALVGGLYGIAGASLMGCDAPVMMSTLGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPQTLQNADVAKASYALFGASGVLSLGLAIV 752
            +GR LVA  G+  LS       S  EK+SYT +QA+TGRP+SPHVTIYDFP AALSSIANRVTG+ALV GLYGI+GA+L+GCDA  +MS LGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMP+TLQ A VAK SYAL G SG +SLGLA V
Sbjct:   23 KGRPLVAAVGSHALSRSSSSSASDKEKESYTARQARTGRPVSPHVTIYDFPPAALSSIANRVTGVALVAGLYGISGATLVGCDAAGLMSALGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPETLQTAGVAKTSYALLGVSGAVSLGLAAV 176
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BLAST of mRNA_H-paniculata_contig2794.7633.1 vs. uniprot
Match: A0A835YMP1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP1_9STRA)

HSP 1 Score: 159 bits (403), Expect = 2.940e-43
Identity = 78/145 (53.79%), Postives = 102/145 (70.34%), Query Frame = 3 
Query:  318 QGRSLVAGTRVLSSTPEKQSYTEKQAQTGRPLSPHVTIYDFPAAALSSIANRVTGIALVGGLYGIAGASLMGCDAPVMMSTLGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPQTLQNADVAKASYALFGASGVLSLGLAIV 752
            Q  +    TR+LS       Y E+Q +TGRP+SPHVT Y FP  A+SSI NRVTG+ LVGGLYGI   +L+G D   +M+ LG + V P  K+ V+FPL+YHYLGA RHT+WD+ P+T+ NA VA++SY LFGA+G L+L  A+V
Sbjct:   16 QAGATAGSTRILS------DYIERQNKTGRPVSPHVTAYRFPVVAISSITNRVTGVGLVGGLYGIGALALVGVDVQGLMAMLGETAVAPLAKMVVTFPLIYHYLGAARHTIWDFKPETVNNASVAQSSYILFGAAGGLTLLTAVV 154
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BLAST of mRNA_H-paniculata_contig2794.7633.1 vs. uniprot
Match: A0A836CCH7_9STRA (Transmembrane subunit of succinate dehydrogenase/Fumarate reductase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCH7_9STRA)

HSP 1 Score: 145 bits (367), Expect = 3.120e-38
Identity = 71/127 (55.91%), Postives = 90/127 (70.87%), Query Frame = 3 
Query:  366 EKQSYTEKQAQTGRPLSPHVTIYDFPAAALSSIANRVTGIALVGGLYGIAGASLMGCDAPVMMSTLGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPQTLQNADVAKASYALFGASGVLSLGLA 746
            E  SY E Q + GRP+SPHVT Y FP AA+SSI NR+TG+ALVGGLYGI   SL+G DA  +MS +  S +   VKL V+FPL+YHY  A RHT+WD+ P+T++N  V K+S  +F A+G LSL  A
Sbjct:   11 ESHSYDELQQRRGRPISPHVTNYRFPIAAISSITNRITGVALVGGLYGIGALSLVGVDAQHIMSVIHDSILAGPVKLVVTFPLIYHYFAAARHTIWDFYPETVENKSVEKSSLLIFAAAGSLSLAAA 137
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BLAST of mRNA_H-paniculata_contig2794.7633.1 vs. uniprot
Match: A0A7S1XVJ2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVJ2_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.470e-37
Identity = 82/174 (47.13%), Postives = 109/174 (62.64%), Query Frame = 3 
Query:  267 TVKTLLTALARL-PCSLSQGRSLVAGTRV-----------LSSTPEKQSYTEKQAQTGRPLSPHVTIYDFPAAALSSIANRVTGIALVGGLYGIAGASLMGCDAPVMMSTLGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPQTLQNADVAKASYALFGASGVLSLGLAIV 752
            +V  L  ALAR+ P      RS + G RV           L++ P ++ Y+ +Q +TGRP+SPHVTIY FPA A+SSI+ RVTG  L  GL GI   +L+G D P +MS +GSS +GP  K AVS+ LVYH+ GA RH VWD  P+ L+N  V + S  + GA+GV+S GLA +
Sbjct:    6 SVFRLSPALARIQPTRQLALRSALLGRRVTAPSALVPLRDLATAPSEEKYSARQKKTGRPVSPHVTIYAFPAVAISSISVRVTGCILSVGLGGIGALALVGVDTPALMSAVGSSAIGPLAKFAVSYSLVYHFFGAARHYVWDQSPEMLENDQVYQTSLGIMGAAGVISAGLAFM 179
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BLAST of mRNA_H-paniculata_contig2794.7633.1 vs. uniprot
Match: A0A7S1YU13_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YU13_9STRA)

HSP 1 Score: 137 bits (346), Expect = 3.130e-35
Identity = 70/133 (52.63%), Postives = 92/133 (69.17%), Query Frame = 3 
Query:  366 EKQSYTEKQAQTGRPLSPHVTIYDFPAAALSSIANRVTGIALVGGLYGIAGASLMGCD--APVMMSTLGSSG--VGPAVKLAVSFPLVYHYLGAVRHTVWDYMPQTLQNADVAKASYALFGASGVLSLGLAIV 752
            +KQ+Y+E+ A+TGRP+SPH+TIY FP  ALSSI NRVTG+AL  G  G+    L+G    A  ++  +GSSG  VG   K AV+FP VYHY+GA+RH  WD  P+ L+N DV KAS ALFG+S ++S G   +
Sbjct:    5 KKQNYSERMARTGRPVSPHLTIYSFPVGALSSITNRVTGVALTFGAAGVGAIELLGGSGAAAGLLQDIGSSGALVGCTAKFAVAFPCVYHYIGAIRHLAWDNRPELLENTDVEKASIALFGSSLLISAGFMFI 137
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BLAST of mRNA_H-paniculata_contig2794.7633.1 vs. uniprot
Match: A0A7S2D072_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D072_9STRA)

HSP 1 Score: 139 bits (349), Expect = 3.630e-35
Identity = 69/124 (55.65%), Postives = 89/124 (71.77%), Query Frame = 3 
Query:  366 EKQSYTEKQAQTGRPLSPHVTIYDFPAAALSSIANRVTGIALVGGLYGIAGASLMGCDAPVMMSTLGSSG-VGPAVKLAVSFPLVYHYLGAVRHTVWDYMPQTLQNADVAKASYALFGASGVLS 734
            +KQ+Y+E+ A  G P+SPHVTIY FP  ALSSI  R+TG+ L  G  GIAG +L+G D P MMSTLG  G +G   K +V+FP+ YH+LG  RH VWD+MP+ +QN  V +AS+ALFG S VL+
Sbjct:   35 QKQTYSERMAAKGLPVSPHVTIYAFPVVALSSITVRITGVLLSVGCTGIAGGALVGADVPAMMSTLGDMGALGYLAKFSVAFPVSYHFLGGCRHAVWDHMPEYVQNGAVEQASWALFGGSAVLT 158
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BLAST of mRNA_H-paniculata_contig2794.7633.1 vs. uniprot
Match: A0A7S2HYL2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HYL2_9STRA)

HSP 1 Score: 135 bits (341), Expect = 7.200e-34
Identity = 76/173 (43.93%), Postives = 105/173 (60.69%), Query Frame = 3 
Query:  252 PFTSCTVKTLLTALARL--PCSLSQGRSLVAGTRVLSSTPEKQSYTEKQAQTGRPLSPHVTIYDFPAAALSSIANRVTGIALVGGLYGIAGASLMGCDAPVM--MSTLGSSG--VGPAVKLAVSFPLVYHYLGAVRHTVWDYMPQTLQNADVAKASYALFGASGVLSLGLAIV 752
            P TS  ++ L+     L      S  RS+   ++  +   +KQ+Y E+ A+TGRP+SPH+TIY FP  A+SSI NRVTG AL  G  G+    L+G     M  M  + +SG  V  + K AV+FP ++HY GA+RH  WDYMP+ L N DV KAS+ALFG+S V+S+G   +
Sbjct:   15 PSTSALLRPLVQRQIALHNAAKCSSVRSMTILSKESAEEYKKQNYKERMAKTGRPVSPHLTIYHFPVGAMSSITNRVTGCALTFGAAGVGAIELVGGSGAAMGLMQDIAASGGLVAASAKFAVAFPCIFHYFGAIRHIAWDYMPEYLNNPDVEKASWALFGSSLVVSVGFMFI 187
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BLAST of mRNA_H-paniculata_contig2794.7633.1 vs. uniprot
Match: W7TK90_9STRA (Succinate dehydrogenase cytochrome b subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TK90_9STRA)

HSP 1 Score: 130 bits (328), Expect = 4.590e-32
Identity = 67/127 (52.76%), Postives = 88/127 (69.29%), Query Frame = 3 
Query:  357 STPEKQSYTEKQAQTGRPLSPHVTIYDFPAAALSSIANRVTGIALVGGLYGIAGASLMGCDAPVMMSTLGSSGVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPQTLQNADVAKASYALFGASGVLSL 737
            ST  K++YTE+QA+TGRP+SPHVTIY FP  AL+SI+ RVTG  L  GL GI+  +L G D P++MS+LG+S VG   K+   FPL++HY   +RH  WD  P  L N  VA+ASY L G++  +SL
Sbjct:   41 STASKETYTERQARTGRPVSPHVTIYKFPITALTSISTRVTGGVLTVGLTGISLLALGGADVPMLMSSLGNSMVGVPAKVLFGFPLIFHYGSGLRHFFWDNNPNFLNNKGVAEASYILLGSTVAISL 167
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BLAST of mRNA_H-paniculata_contig2794.7633.1 vs. uniprot
Match: A0A448Z9H1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9H1_9STRA)

HSP 1 Score: 130 bits (327), Expect = 4.780e-32
Identity = 71/134 (52.99%), Postives = 88/134 (65.67%), Query Frame = 3 
Query:  366 EKQSYTEKQAQTGRPLSPHVTIYDFPAAALSSIANRVTGIALVGGLYGIAGASLMGCDAPVM--MSTLGSSG--VGPAVKLAVSFPLVYHYLGAVRHTVWDYMPQT-LQNADVAKASYALFGASGVLSLGLAIV 752
            +KQ+YTE+  +TGRP+SPHVTIY  P  A +SI  RVTGI L  G +G+    LMG     +  M ++GSSG  V    K AV+FPLVYHYLGAV H VWDY P   L N DV K+S AL G++G++SLG   V
Sbjct:   40 KKQNYTERMQKTGRPVSPHVTIYALPVPAFASITTRVTGIMLSFGAFGVGAIDLMGGPGASLSLMESIGSSGFLVASPAKFAVAFPLVYHYLGAVXHFVWDYFPDKYLNNEDVQKSSIALIGSAGLISLGFVFV 173
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BLAST of mRNA_H-paniculata_contig2794.7633.1 vs. uniprot
Match: A0A5D6YA41_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YA41_9STRA)

HSP 1 Score: 127 bits (319), Expect = 6.380e-31
Identity = 68/128 (53.12%), Postives = 83/128 (64.84%), Query Frame = 3 
Query:  372 QSYTEKQAQTGRPLSPHVTIYDFPAAALSSIANRVTGIALVGGLYGIAGASLMGCDAPVMMSTLGSS--GVGPAVKLAVSFPLVYHYLGAVRHTVWDYMPQTLQNADVAKASYALFGASGVLSLGLAI 749
            Q+Y+E+QA  GRP+SPHV IY FP  ALSSI NR TG+AL  G  G A  + +G D P ++     +  G  PA KL V+FPL YH L  VRH VWD  PQ + N D  K+SYA+ GAS VLSLG A+
Sbjct:   32 QTYSERQAALGRPVSPHVEIYAFPVTALSSITNRATGVALTIGFAGGAALAAVGADVPSLIYAAQDTIPGFAPASKLLVAFPLTYHMLNGVRHGVWDKAPQLINNIDGPKSSYAVIGASLVLSLGAAL 159
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2794.7633.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD41_ECTSI9.610e-6474.03SDH3, succinate dehydrogenase subunit 3 n=2 Tax=Ec... [more]
A0A835YMP1_9STRA2.940e-4353.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CCH7_9STRA3.120e-3855.91Transmembrane subunit of succinate dehydrogenase/F... [more]
A0A7S1XVJ2_9STRA1.470e-3747.13Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1YU13_9STRA3.130e-3552.63Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2D072_9STRA3.630e-3555.65Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2HYL2_9STRA7.200e-3443.93Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
W7TK90_9STRA4.590e-3252.76Succinate dehydrogenase cytochrome b subunit n=2 T... [more]
A0A448Z9H1_9STRA4.780e-3252.99Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A5D6YA41_9STRA6.380e-3153.13Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2794contigH-paniculata_contig2794:3693..7111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.9
Seed ortholog evalue8.4e-54
Seed eggNOG ortholog2880.D8LD41
Preferred nameSDHC
KEGG rclassRC00045
KEGG koko:K00236
KEGG ReactionR02164
KEGG Pathwayko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00009,M00011,M00148
Hectar predicted targeting categoryother localisation
GOsGO:0000104,GO:0002376,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005749,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006105,GO:0006119,GO:0006121,GO:0006139,GO:0006163,GO:0006605,GO:0006626,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006979,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008177,GO:0008340,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0010259,GO:0015031,GO:0015833,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016310,GO:0016491,GO:0016627,GO:0016635,GO:0016999,GO:0017038,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0020037,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042721,GO:0042742,GO:0042773,GO:0042775,GO:0042886,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045087,GO:0045184,GO:0045257,GO:0045273,GO:0045281,GO:0045283,GO:0045333,GO:0046034,GO:0046483,GO:0046906,GO:0046907,GO:0048037,GO:0048518,GO:0048519,GO:0048583,GO:0048584,GO:0048585,GO:0048856,GO:0050789,GO:0050829,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0055085,GO:0055086,GO:0055114,GO:0061024,GO:0065002,GO:0065007,GO:0070469,GO:0070585,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072350,GO:0072521,GO:0072594,GO:0072655,GO:0072657,GO:0080134,GO:0090150,GO:0090151,GO:0097159,GO:0098542,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1902882,GO:1902883,GO:1902884,GO:1990204,GO:1990542
EggNOG free text desc.succinate dehydrogenase activity
EggNOG OGsCOG2009@1,KOG0449@2759
Ec32 ortholog descriptionSDH3, succinate dehydrogenase subunit 3
Ec32 orthologEc-11_000360.1
COG Functional cat.C
BiGG ReactioniMM904.YMR118C,iND750.YMR118C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons3
Model size1495
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2794.7633.1prot_H-paniculata_contig2794.7633.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2794 4433..6926 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.1951444-UTR-H-paniculata_contig2794:3692..44321622929845.1951444-UTR-H-paniculata_contig2794:3692..4432Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2794 3693..4432 -
1691481036.513209-UTR-H-paniculata_contig2794:3692..44321691481036.513209-UTR-H-paniculata_contig2794:3692..4432Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2794 3693..4432 -
1622929845.2461236-UTR-H-paniculata_contig2794:6926..71111622929845.2461236-UTR-H-paniculata_contig2794:6926..7111Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2794 6927..7111 -
1691481036.561871-UTR-H-paniculata_contig2794:6926..71111691481036.561871-UTR-H-paniculata_contig2794:6926..7111Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2794 6927..7111 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.206476-CDS-H-paniculata_contig2794:4432..45401622929845.206476-CDS-H-paniculata_contig2794:4432..4540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2794 4433..4540 -
1691481036.526426-CDS-H-paniculata_contig2794:4432..45401691481036.526426-CDS-H-paniculata_contig2794:4432..4540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2794 4433..4540 -
1622929845.219055-CDS-H-paniculata_contig2794:5149..52981622929845.219055-CDS-H-paniculata_contig2794:5149..5298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2794 5150..5298 -
1691481036.5358245-CDS-H-paniculata_contig2794:5149..52981691481036.5358245-CDS-H-paniculata_contig2794:5149..5298Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2794 5150..5298 -
1622929845.230877-CDS-H-paniculata_contig2794:6613..69261622929845.230877-CDS-H-paniculata_contig2794:6613..6926Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2794 6614..6926 -
1691481036.545331-CDS-H-paniculata_contig2794:6613..69261691481036.545331-CDS-H-paniculata_contig2794:6613..6926Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2794 6614..6926 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2794.7633.1

>prot_H-paniculata_contig2794.7633.1 ID=prot_H-paniculata_contig2794.7633.1|Name=mRNA_H-paniculata_contig2794.7633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
MLLPVTVHSYLPNNIFGCMPLRPFTSCTVKTLLTALARLPCSLSQGRSLV
AGTRVLSSTPEKQSYTEKQAQTGRPLSPHVTIYDFPAAALSSIANRVTGI
ALVGGLYGIAGASLMGCDAPVMMSTLGSSGVGPAVKLAVSFPLVYHYLGA
VRHTVWDYMPQTLQNADVAKASYALFGASGVLSLGLAIV*
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mRNA from alignment at H-paniculata_contig2794:3693..7111-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2794.7633.1 ID=mRNA_H-paniculata_contig2794.7633.1|Name=mRNA_H-paniculata_contig2794.7633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3419bp|location=Sequence derived from alignment at H-paniculata_contig2794:3693..7111- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCATGGTAATGTCTACTGAATATTGTGCGTTTGTGCCTGATTTGCTG
GACGGTAGTTGATTGTTTTCTGGAATCTAGTACACGTTGCAAGAAAAAAC
GGGTAAAAACGCGTACATTCACGTTCTCTTTCGTGGGTAGTAATCCGGCC
GTCCCATCACAATCCGCTATCTCATCACCACGTGCATGTTATTACCCGTT
ACTGTTCACAGCTACCTTCCCAACAATATTTTTGGATGTATGCCACTACG
ACCTTTCACTTCATGTACCGTGAAAACCTTGCTGACTGCCTTGGCTCGTT
TACCGTGCTCCTTGTCCCAGGGCCGTTCCCTGGTCGCCGGCACCCGTGTC
CTGAGTTCGACACCGGAGAAGCAGTCCTACACAGAGAAGCAAGCCCAAAC
TGGGCGACCTTTGTCGCCGCACGTTACGATCTACGACTTCCCGGCGGCCG
CGTTATCGTCTATCGCCAATCGCGTCACTGGGATCGCTCTCGTAGGCGGT
GGGTGCAATAAATTATGTTCAGATGGATCGATATCGTTCTGTTTTGGTGC
CCGTTTTTGCTGCAATATACCCGACGAGCCGCAGTGCCACGCGATCGTGA
CAGTTGAGCGTCTTGTGCCCGCCCGTGTACTTAGTGTGCACAAAAATATA
CTCCGGAGTGCAGCACTATCGCAAACGTTTCCCTATTGCTATCCCGGCGC
CGAACCTAAATATGGTGTGTGACCCGTCGGAGAGCAGGGAAATCGAAGAC
CCGATGACGTGCACATTGGCCAATACCGAGCTGCGTATGCAAAAGCCCCC
CGGCGAGATCTAGGGGGGGGGTTAGCATTAGTAGGTTTTCCGATGATCTC
CTAATGATAAAAAAAATAAGCTTTTTCTACAAAAACTGGTTCAGCTGACG
GTGCCCAGCTGTAACTAGACCTCTATTTCGTAGGTATGGTCCACGGTAGG
CATGTGTTTGATGAGGCTGAGCAGGAAGGTTTCGCGTTGCTGGTATTGAC
TGTTTCCTCTGTGAGCCTGCGCTCTCTGCCCCTCGTTCAACGAATATCTC
ATAGTTATTATCATGCTGGAGGTAAACGCTGGTGTACAGGCATGACTGTA
TGAGGTAGGAGTTAGCGTCTCCGAGTGAAAGTGTGGATACGGACGGTGCA
CTTGGGGGAGAAGGAAGCGGGGCACCGTTGGTCGTTTTGCCTCGAATGAG
GGCATAAGCATGAGTGCTTGAACTAGGTGTAGGTAATATCCTGTGGCTTT
CTCTTGATGTATGCAATCGATATTTTCGGCTAATCATTTTACGGAACCGG
TACGGCCGTTTGTTTCATGCTTGAAAAACATGCCGCCAATGAAGACACCA
CGCGCGGGATGACTGTATGGAATGCCTTGCGATTATGTCCGCTCTTATCT
CCACCTATTCGTAGTACAACAAAAAAGAAAAATGTTCTCGTCAGTATTAA
GCCTTTCTGAAAGCTGTTGCCCCTCTTACAACACCAAGTCCTTTAGTTGA
CATGCAGGTTCACTCATAGAAGGGTCTATCTATCTGTCTCGAGGATTCGC
GATTGAATCGCTGTCTAGATTCATCCCAGGGGAAGCTGCTAGCAACACAA
CATCGAAATCATGACCTCAGATCTTCTCCGCAAAGGTCACAAACACTGTG
AAGAATCGAGGCATTTTTCGTGAAGAAATTCCATCAGAATGGTTCTCTCA
TGTCTCTCAAATGTTCCCCTAGTTTGATCAGTGTATGATATAGCTCAAAC
GTCCTTTCCCCCCCTCCCTCTCTCCTTTTACTACCCTTCGCCTCCCCTCC
ACCCCCTACGAAGGCCTCTATGGCATTGCTGGAGCATCCCTCATGGGCTG
TGATGCCCCGGTGATGATGAGTACTCTCGGTTCTTCGGGCGTGGGACCGG
CGGTGAAATTGGCGGTTTCTTTCCCGCTCGTGTACCACTATTTAGGGGCG
GTGCGACACACGGTGAGTCGTCGCTTGGTGCTGTGTTTTCGCAGCAAGCT
GCTTGATAACCTGTTCGGTTCGCCAGTAATCCGCACCGTTTCCAATGCTA
GGTGTCAAGCTGCAGTATCGATATGACACGATCGGGGTCCGAAGCGGAAA
GAAAAATCACCCGCGAAGGCACCAAGAGTGCGAATTTATTCGAAGGAAGT
GCAATCACAAGCCGGTGGTGCGCGATGGAAATGGTGTCAGCGGTCTAGAT
TTTTTTTCGCTAATGCTATCGAGATACCATGTCGCCAGCGTTGTCCCGAC
TCGAGGATCATCCCTCTTCCCCTTTTACTTCATCTACTAGATGTACTCCG
CCTCAGGTCGTCGTGATACATGATGCTCGTACCCTTGGCTGTTAACCTTC
AAAAGACATTCCTCATAGGTGCAAATCGAACTGACCCATTACTGGTCGCC
CCCCCAATGTAGCCAGAGTTGATCGGATTTTGTGTATATGCTGTGCCCAC
GACTTCTCCCTACGGTTCATCGTTCTCCCTCACCTCGTTTCCCCCGTATC
TTCTCACTCCACGCCACATTTCATGTCTTGGACGTTTTCGGTTTTCGTCT
TGCGTCGTGTTCCACCCAAAGGTATGGGACTACATGCCACAAACCCTCCA
AAACGCAGACGTGGCGAAAGCCAGCTATGCCCTCTTCGGAGCGTCGGGGG
TGCTGAGTCTGGGACTGGCGATAGTTTGAAGCTCTCGCTTCACGCGTTAG
TTTTGTGTTCTGCGCTGATGGAATAGCACCAGCCGTGTACGTTTGAAAAG
GAAAACCACGGGAGGGGGAGCAGTTGGGGTCTGGTTTGCAAATATTTTGT
ATTACTATTTCTGAACAGGTACATGACCCTGTGGGCGTGTGTAGTACACC
ATCACGTCTTGAACGCTGTGTGAACATTCAAGCTTACTGAGAGGACATCC
TTAGGATTTGGGGATCTTGTGTACCCAGTCAACATGAAAAACGAAACGAT
CGTGAGTGTCGCACTGCCCCGTTTTTCCTTGAAAAGTGCCGAATGGTAAC
TTTCCACAATGATTTGTCAACATTTGGGCATTTCGCCGTTGGCACGGATG
GAGGGGGAAAATACATACCGGCACAGGAGCAGCCCAAATGAATACCCTTG
ATTGCTTACTCGTTTGTTGAGATGAATAGTGTTTTTGCAATATCATGTTA
CGAACCTGCCGTGCAGTAAAGAGCCCATTTTTCTTGTCTTCTATCCCTCT
TCTCATGTTATCGGAGTTGCACACGCGCTGTATTGACACAGGCAACTGGT
TAATTTTGTAAACGGCTAGATGGCTAGATTGAACTTTTGGATCGCTCTGT
ACGATCCTTGTGCGCCAATTGAACATTTTCAGCCAATATCCGAGCTATCA
CGGAGCAAATCGGACTCTTCTTCACCTGGATGTGCGAAAATTCAAAATAA
TTATACAAAAATGGCCACA
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Coding sequence (CDS) from alignment at H-paniculata_contig2794:3693..7111-

>mRNA_H-paniculata_contig2794.7633.1 ID=mRNA_H-paniculata_contig2794.7633.1|Name=mRNA_H-paniculata_contig2794.7633.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at H-paniculata_contig2794:3693..7111- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTATTACCCGTTACTGTTCACAGCTACCTTCCCAACAATATTTTTGG
ATGTATGCCACTACGACCTTTCACTTCATGTACCGTGAAAACCTTGCTGA
CTGCCTTGGCTCGTTTACCGTGCTCCTTGTCCCAGGGCCGTTCCCTGGTC
GCCGGCACCCGTGTCCTGAGTTCGACACCGGAGAAGCAGTCCTACACAGA
GAAGCAAGCCCAAACTGGGCGACCTTTGTCGCCGCACGTTACGATCTACG
ACTTCCCGGCGGCCGCGTTATCGTCTATCGCCAATCGCGTCACTGGGATC
GCTCTCGTAGGCGATGTTATTACCCGTTACTGTTCACAGCTACCTTCCCA
ACAATATTTTTGGATGTATGCCACTACGACCTTTCACTTCATGTACCGTG
AAAACCTTGCTGACTGCCTTGGCTCGTTTACCGTGCTCCTTGTCCCAGGG
CCGTTCCCTGGTCGCCGGCACCCGTGTCCTGAGTTCGACACCGGAGAAGC
AGTCCTACACAGAGAAGCAAGCCCAAACTGGGCGACCTTTGTCGCCGCAC
GTTACGATCTACGACTTCCCGGCGGCCGCGTTATCGTCTATCGCCAATCG
CGTCACTGGGATCGCTCTCGTAGGCGGCCTCTATGGCATTGCTGGAGCAT
CCCTCATGGGCTGTGATGCCCCGGTGATGATGAGTACTCTCGGTTCTTCG
GGCGTGGGACCGGCGGTGAAATTGGCGGTTTCTTTCCCGCTCGTGTACCA
CTATTTAGGGGCGGTGCGACACACGGCCTCTATGGCATTGCTGGAGCATC
CCTCATGGGCTGTGATGCCCCGGTGATGATGAGTACTCTCGGTTCTTCGG
GCGTGGGACCGGCGGTGAAATTGGCGGTTTCTTTCCCGCTCGTGTACCAC
TATTTAGGGGCGGTGCGACACACGGTATGGGACTACATGCCACAAACCCT
CCAAAACGCAGACGTGGCGAAAGCCAGCTATGCCCTCTTCGGAGCGTCGG
GGGTGCTGAGTCTGGGACTGGCGATAGTTTGAGTATGGGACTACATGCCA
CAAACCCTCCAAAACGCAGACGTGGCGAAAGCCAGCTATGCCCTCTTCGG
AGCGTCGGGGGTGCTGAGTCTGGGACTGGCGATAGTTTGA
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