mRNA_H-paniculata_contig27931.7631.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27931.7631.1
Unique NamemRNA_H-paniculata_contig27931.7631.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27931.7631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27931contigH-paniculata_contig27931:709..1326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size618
Cds size543
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.0562906-CDS-H-paniculata_contig27931:708..12511622929845.0562906-CDS-H-paniculata_contig27931:708..1251Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27931 709..1251 +
1691481036.4512606-CDS-H-paniculata_contig27931:708..12511691481036.4512606-CDS-H-paniculata_contig27931:708..1251Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27931 709..1251 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929845.0702717-UTR-H-paniculata_contig27931:1251..13261622929845.0702717-UTR-H-paniculata_contig27931:1251..1326Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27931 1252..1326 +
1691481036.461004-UTR-H-paniculata_contig27931:1251..13261691481036.461004-UTR-H-paniculata_contig27931:1251..1326Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27931 1252..1326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27931.7631.1prot_H-paniculata_contig27931.7631.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27931 709..1251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27931.7631.1

>prot_H-paniculata_contig27931.7631.1 ID=prot_H-paniculata_contig27931.7631.1|Name=mRNA_H-paniculata_contig27931.7631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=181bp
QNKQQNKKWCSLHKSPHHDNSECRNQQDSQRNTSSNGNQSSNSTFTQHGQ
HQQSSPPYQANIAIDPAATTVPPTHNTPTEFSASTPQLSTTTASSTSPPP
PGIGFSFITEESNTYAKPTPSTSIKFCMTADSGASIHLIDNQLFDNIESK
MVDFVQYNPPLPISAAGRHVLHGIGKVRSK*
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mRNA from alignment at H-paniculata_contig27931:709..1326+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27931.7631.1 ID=mRNA_H-paniculata_contig27931.7631.1|Name=mRNA_H-paniculata_contig27931.7631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=618bp|location=Sequence derived from alignment at H-paniculata_contig27931:709..1326+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAACAAGCAGCAAAACAAGAAATGGTGCAGCCTACACAAATCCCCCCA
TCACGACAACTCTGAGTGCCGCAACCAACAAGACAGCCAGCGAAACACCA
GCTCCAACGGCAATCAAAGCTCCAACAGCACTTTCACTCAGCATGGACAG
CATCAACAGAGCAGCCCTCCGTACCAAGCCAACATCGCCATCGACCCGGC
CGCCACTACAGTACCTCCTACACACAACACTCCGACTGAGTTCAGCGCTT
CGACTCCTCAACTTTCGACAACTACCGCATCATCCACGTCACCGCCACCG
CCCGGCATCGGCTTTTCGTTCATCACTGAAGAATCCAACACCTACGCGAA
GCCGACTCCCAGTACATCAATCAAGTTCTGCATGACAGCGGACAGCGGAG
CGTCTATCCATTTGATTGACAACCAGCTGTTCGACAATATCGAAAGCAAG
ATGGTAGACTTCGTCCAGTACAACCCTCCACTACCCATCTCTGCTGCAGG
ACGCCATGTTCTACATGGGATTGGGAAAGTACGCTCCAAGTAGTCGCGAA
GGATCAGCAAGGATGCAAGCGCGCTGTCCAACTCACTGTGGCCGTCGTTC
CTGGACTTGGGCGACACC
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Coding sequence (CDS) from alignment at H-paniculata_contig27931:709..1326+

>mRNA_H-paniculata_contig27931.7631.1 ID=mRNA_H-paniculata_contig27931.7631.1|Name=mRNA_H-paniculata_contig27931.7631.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at H-paniculata_contig27931:709..1326+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAACAAGCAGCAAAACAAGAAATGGTGCAGCCTACACAAATCCCCCCA
TCACGACAACTCTGAGTGCCGCAACCAACAAGACAGCCAGCGAAACACCA
GCTCCAACGGCAATCAAAGCTCCAACAGCACTTTCACTCAGCATGGACAG
CATCAACAGAGCAGCCCTCCGTACCAAGCCAACATCGCCATCGACCCGGC
CGCCACTACAGTACCTCCTACACACAACACTCCGACTGAGTTCAGCGCTT
CGACTCCTCAACTTTCGACAACTACCGCATCATCCACGTCACCGCCACCG
CCCGGCATCGGCTTTTCGTTCATCACTGAAGAATCCAACACCTACGCGAA
GCCGACTCCCAGTACATCAATCAAGTTCTGCATGACAGCGGACAGCGGAG
CGTCTATCCATTTGATTGACAACCAGCTGTTCGACAATATCGAAAGCAAG
ATGGTAGACTTCGTCCAGTACAACCCTCCACTACCCATCTCTGCTGCAGG
ACGCCATGTTCTACATGGGATTGGGAAAGTACGCTCCAAGTAGCAAAACA
AGCAGCAAAACAAGAAATGGTGCAGCCTACACAAATCCCCCCATCACGAC
AACTCTGAGTGCCGCAACCAACAAGACAGCCAGCGAAACACCAGCTCCAA
CGGCAATCAAAGCTCCAACAGCACTTTCACTCAGCATGGACAGCATCAAC
AGAGCAGCCCTCCGTACCAAGCCAACATCGCCATCGACCCGGCCGCCACT
ACAGTACCTCCTACACACAACACTCCGACTGAGTTCAGCGCTTCGACTCC
TCAACTTTCGACAACTACCGCATCATCCACGTCACCGCCACCGCCCGGCA
TCGGCTTTTCGTTCATCACTGAAGAATCCAACACCTACGCGAAGCCGACT
CCCAGTACATCAATCAAGTTCTGCATGACAGCGGACAGCGGAGCGTCTAT
CCATTTGATTGACAACCAGCTGTTCGACAATATCGAAAGCAAGATGGTAG
ACTTCGTCCAGTACAACCCTCCACTACCCATCTCTGCTGCAGGACGCCAT
GTTCTACATGGGATTGGGAAAGTACGCTCCAAGTAG
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