prot_H-paniculata_contig11194.762.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig11194.762.1
Unique Nameprot_H-paniculata_contig11194.762.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length340
Homology
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BLAST of mRNA_H-paniculata_contig11194.762.1 vs. uniprot
Match: A0A8B7P2C3_HYAAZ (E3 ubiquitin-protein ligase TRAIP-like n=2 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7P2C3_HYAAZ)

HSP 1 Score: 57.0 bits (136), Expect = 1.070e-5
Identity = 29/77 (37.66%), Postives = 41/77 (53.25%), Query Frame = 0 
Query:    7 CICCEELAGG---LSAAPCGHVMHTTCIGVWHAHSTNPTCPICKTKLPAQLLKLFFAVSETPCRVESNDSLACTTTN 80
            C+ C+E+      +SA PCGH+ HTTC+  W   S   TCP C+     +LL+L+FA S+        D+L C   N
Sbjct:    5 CVICDEVFMPNIEVSATPCGHIFHTTCVSQWFERSA--TCPQCRFSGKMELLRLYFAESKNENNQVDADTLQCNLDN 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11194.762.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8B7P2C3_HYAAZ1.070e-537.66E3 ubiquitin-protein ligase TRAIP-like n=2 Tax=Hya... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 157..184
NoneNo IPR availableCOILSCoilCoilcoord: 132..152
NoneNo IPR availableCOILSCoilCoilcoord: 260..294
NoneNo IPR availablePANTHERPTHR46569FAMILY NOT NAMEDcoord: 2..303
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 2..53
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 6..46
e-value: 1.4E-4
score: 31.2
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 5..47
e-value: 1.6E-6
score: 28.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 6..47
score: 12.091
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..57
e-value: 4.8E-10
score: 40.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11194contigH-paniculata_contig11194:1034..6709 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11194.762.1mRNA_H-paniculata_contig11194.762.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig11194 615..6994 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig11194.762.1 ID=prot_H-paniculata_contig11194.762.1|Name=mRNA_H-paniculata_contig11194.762.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=340bp
MSDSQCCICCEELAGGLSAAPCGHVMHTTCIGVWHAHSTNPTCPICKTKL
PAQLLKLFFAVSETPCRVESNDSLACTTTNSLGTAMGGSGGAEIGAGDNF
SEGQSLTAADGRRLRSEVECIKRVLDESTLACQKYRDDVKTLTERLRETK
SKCAVKTVELEATVQATESELERVRIDLSKKHRECFRATRELAAMKTQLT
EYKSEKNANQYIAQFAARKSMLLTGLDQVSVEPILQSVVRGSIRAEDVIR
TQHESLVQNMAQQRNTLHSLRKLKREHEDMEERIEAELKESRLLCRGEKE
KVEDRRGTGTRALLALLYFVGLVPHKKGTRKRAVVGLRD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD