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Homology
BLAST of mRNA_H-paniculata_contig11194.762.1 vs. uniprot
Match: A0A8B7P2C3_HYAAZ (E3 ubiquitin-protein ligase TRAIP-like n=2 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7P2C3_HYAAZ) HSP 1 Score: 57.4 bits (137), Expect = 1.830e-5 Identity = 29/77 (37.66%), Postives = 41/77 (53.25%), Query Frame = 3
Query: 438 CICCEELAGG---LSAAPCGHVMHTTCIGVWHAHSTNPTCPICKTKLPAQLLKLFFAVSETPCRVESNDSLACTTTN 659
C+ C+E+ +SA PCGH+ HTTC+ W S TCP C+ +LL+L+FA S+ D+L C N
Sbjct: 5 CVICDEVFMPNIEVSATPCGHIFHTTCVSQWFERSA--TCPQCRFSGKMELLRLYFAESKNENNQVDADTLQCNLDN 79
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Zinc finger, RING-type |
| Ec32 ortholog | Ec-06_009440.1 |
| Exons | 6 |
| Model size | 1724 |
| Cds size | 1020 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11194.762.1 >prot_H-paniculata_contig11194.762.1 ID=prot_H-paniculata_contig11194.762.1|Name=mRNA_H-paniculata_contig11194.762.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=340bp
MSDSQCCICCEELAGGLSAAPCGHVMHTTCIGVWHAHSTNPTCPICKTKL
PAQLLKLFFAVSETPCRVESNDSLACTTTNSLGTAMGGSGGAEIGAGDNF
SEGQSLTAADGRRLRSEVECIKRVLDESTLACQKYRDDVKTLTERLRETK
SKCAVKTVELEATVQATESELERVRIDLSKKHRECFRATRELAAMKTQLT
EYKSEKNANQYIAQFAARKSMLLTGLDQVSVEPILQSVVRGSIRAEDVIR
TQHESLVQNMAQQRNTLHSLRKLKREHEDMEERIEAELKESRLLCRGEKE
KVEDRRGTGTRALLALLYFVGLVPHKKGTRKRAVVGLRD* back to topmRNA from alignment at H-paniculata_contig11194:615..6994+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig11194.762.1 ID=mRNA_H-paniculata_contig11194.762.1|Name=mRNA_H-paniculata_contig11194.762.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6380bp|location=Sequence derived from alignment at H-paniculata_contig11194:615..6994+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGTACCAACACAATCGTGTCCCGACGGACATTGATCGCAACGTTTAGC
GTTCAACGTTGTTACCTGTTCATCCTGGTTGTGGACAACACCAGAGGTCT
AAGATTGTGCAGGCTATCCTGTGCTACACTTGGTGACCCATACACAGGGT
TTCCGTTTAGCCTAGTATGCGTTGTTAGCATATACTTAACGGCTTTCGCT
GTTTTCAAAATCAACTTGGGCGACTCACACGAGGCACAACACTGCACGCC
GGTAGCAAGGGCAGTAGTGCTTTGCTACCGCAGCGCTCAGCTCTTGTCTT
TCACATTCATTTTAACTTGTTTTCATATTCACGTGTCGACCTACTGCAAA
AACAGCGATACGGCTGCATAGCCGGATTCAAGCGATTTTGAAAGTGGTGG
TGTCGTACAAGAAGAGGCCATGTCAGATTCCCAATGCTGCATCTGCTGCG
AAGAGCTGGCAGGCGGCTTGAGTGCGGCGCCGTGTGGGCATGTTATGCAT
ACCACGTGGTGAGTACGGTTGACAGATGGCAGAGAATAGAATGTATAACG
CAGTAACATGACCGATCTATATTTTGTAATTGCAGTTGCTGATGGGCGTA
TATTATAGTACGGGCCCACTGACAAGAGTTACCCCCCCAAAAAATTTAGC
CTCAAGTTTCCCTAAACTGTAAGAAATCCGCTTCAAGAAATGGGGCTCAA
ATTGTGGCCTTATACAAATTCCTACATAAAAGTGAATACTGCTCGTAATT
CTTATCAAAACAAGCAGATTTTGAGCTTCACCCGAAATAAGAGTTTCTTA
TCATTGAGCCCGTACTGTATTGAGCTTCATATTGCTTAACCTTGAACCCT
TATGACACCCTCTTTGTACAGATCGAGTGCAGCAGGGTGGTGGAGGGCAC
CAAGTCTTGAGGTCTGTAAGCATCATGTACATGTGGGAATGATTTTTTCG
GTACTATTTCTACTGTGCTGAATAGTACACACAGTAAATATTTGCAACAC
CCTTGACTACCCCTGTCTGCGCGTGGAGTTGCTTTAGTGATACAATCGAA
CGTTTTCACTATTTCTACCTTTGACCTCAGTGTCATTCCTAGTAGCAGCG
AAAAAAGAAAAAATTATAATTTTGAGATTCTCAACCTCAGAAAGATCCAA
AATTTTCCCACAGAACTGTCAAAAAATGTTTTCGTCAATATTCTACATAT
ATGGAGAATCTCATATTTTTGAGAAACTTTTGACTCTTAGACCATGTCTT
ATGGCGTTGAAAATGAGAAGTGGTTTTTGTCATTTTTGGGCAACCACACC
TCCATTCCATCATTTCCAGCACCAGGCCAAAGAGGCCATCTTATGAGAAT
GAGGACTGGTATTTGGATTTTATGTAGAAGAGTTGGCATGCATGCAGTTC
AAATTCAAAAATCACGACACACAACACGCGTTACCGAATCCCTGGCGAGA
CCATCTCTCGGCACGAGCCGTTCGCACCACAACTACCATGATTGGGAGCG
CTGTCACTGCAACACCTGCGTAATAACATGTCTCTCAGTTCCAACACCTC
GCCCCCTTCGCTTTGAGGCTTGATCGTGTTCGTGTTTTCTCTGCTTTCTC
AATCCGGCAATATATTATCTTACATTTTATCTCGCTGTCAGCGGCTACGG
AAATGGGTACTCTCGCAGCAATATAGCAATACGGTACGCGTTCCAGGGCT
CACTTCGATGAACGATACATTATGAGAATACATGCGACATGGTATTTTGG
TGAGCAGCAATCTCTGAAAGGGGGGATACTGATGACCTTCCGCCCGCATT
CTTGAGGCTTCAACGTTTTCGGGCGGCTCGTTTTTTTGGGGGGTTTTAAA
ACCCGGAAGGCTAAGGCAAAAACCGCTATCCGATGCTTCCATACCTAAGT
ATTTCTACATTTCCTTTAACATAACAGAGTTATTTATTCCTCTGCGGGGT
AGGCGCCACCCCGGCTCGGCTGAACCAGGTAGGTAGTGTGGGGGTTGCAC
CCACTAAAAGCCTTTGACTAGACTTCCAGTCATGCTCAGTTCACGAACTA
CCCTACCCGTTCGGGCGTAGGTCCGTGGGGCGGCTCGTTGTTTGATCCAA
GAGATTCCTGCCGCCTTTTTTGTTACAGTGCAGTGTAGTACTGTGTTGGT
GAGATGAATTTTCAAATTAGGATGCCGAGGGCAGCCTGACCTTTCAAGTT
AACGATATAGGCAATGAAGAAGTGGAACGCAGCCTAGGCAGAACACGACG
TAGCGACATCTTTCTCTTGCCTCTTGACAAAACTTACGGTTCCATCTTGT
TGTCCCACCCTGTACGTCGTCCCCTCGTCGGTGGCCATCTCAATGCAGCA
TTGGAGTATGGCACGCACACTCGACAAATCCCACTTGTCCCATCTGCAAA
ACCAAGCTCCCAGCGCAACTGCTCAAGTTGTTTTTCGCAGTCAGCGAAAC
ACCGTGTCGAGTCGAAAGCAATGATAGCTTAGCTTGCACGACTACTAACT
CGCTCGGAACCGCCATGGGGGGTTCAGGCGGCGCTGAGATCGGGGCGGGG
GACAATTTTTCCGAAGGACAATCTCTCACCGCCGCGGACGGTCGCAGGCT
TCGTTCCGAAGTGGAGTGCATTAAGCGGGTGAGCAATGAATCCATCAGCG
TTGTATCAACAGGGGTCGACCGTTTGTTTGATTCATGTCTTGCAACGATG
TACTGTAACTGTAAACGGAAAAAACAAAATAATTATGTGCTGCCGCCGTC
GCATCGCTATCATGAACAATATATTTTCTGTGAGTGCCCTTTTTTTGTAA
CCTCACGGGTGGCGACAGGCGGTCACCGTAAGTCTGTGCAATGTTCACAT
GTTTGAACATCCCGCGGCAAGGACTTGCTGGCTCTGTGCAGGCGGTGCAC
ATGAGCGTGCTACATGTTGGCGAACTTGGTAGAGACGCTTGAAACCAATA
TCCGTGTTGACGGCTACGTAGATGATCGTTATGCGCTATAGCTTATGCGG
CTTTCGCTACGCGTAGGATGTACACATCTGTAAATGGTGCTTATCACCTG
CTGCTAATGCACCGATTTGGGGCAAAAAATATCTCTTCCCTATTTACTGC
AATGTACACCAGACTCAATTGTGTCCTTTCCCGTTCGTTGTATATTGTCG
TGATCCTTGTACGATTCCTGTGCTCAACCTTGGTATACTGAAAGCCCTAG
CGATAAATATCACTTGTGGCACAGAGCTTGCCCTATCTCTCCCGATCCTC
ATAGTGTGCAGCATGGTATCAGCATTTCAGCAGCACGAACCCGCTGCTCC
CGTGGTATGTGTTGTCTGCCGAGCAGGTACTAGACGAGAGCACGCTGGCT
TGTCAGAAGTACCGGGACGACGTGAAGACTCTCACCGAACGGCTGCGGGA
AACGAAGAGCAAGTGCGCAGTCAAGACGGTCGAGTTGGAGGCTACAGTAC
AAGCGACAGAGAGCGAGCTGGAGCGGGTCAGGATTGACCTGGTGAGAGGG
GGGTACACTCTACACTCTTATGCTACATCGTGCGCACAGGGGGGCGTACT
TCCGATCAATTTGGTTTGTGTGTGGTTTTAGGGTCACAGCATATATGCGC
TTGACGTGGGGTTAACTTAACAAAACTGTACATATGGGAGAAAAGAGCGC
CGAGTTTTGCCGTTACCCCAAGATGGAACGTTGCGTGGATAGTCCCGAGA
GTTGGTGGGGGCGATCGACCATGAGTTGCTCTGCTGTATCAGCTACATTC
TCTCGAGGACGCGTGGTCAATGGCCTAACAGCTGACGCATTCGAAACAAA
GTACTGTCGGTTCAATAGCCGTCTCTTACAAATGGCTTCCATATGCAAGC
TAAATGGGAGTTTTCCCAGGCATGGTGTCTTGATAACCGCTGCCTAAACT
TCACTGTCAATGAAGTCGCTAGAGTGACATCTTGAACGCACTCCATTAGC
AGACGCCTTTCTAGGCTACGAGTGACTCGGCCCGGCATGTGTTAGCTACC
CTACACCTTTTCATGTGGAACATTGAACACCGTGTATAGTGCCGTTCTCG
TGTTGTTGTTTTTTTACCACCTGTACCTCGTTGTTGCTCTATGAACTACT
ATTTCTCGTGTACTATAATAGGCACAGACGTTGTTGTACTATCATACAGA
ATATTACTTCTTGCTGAGGTCAATTCCATGTCGTGTTAATTTCCACATAC
TTGCTCGTTCGCTTGCAGAGCAAAAAACATAGGGAATGCTTCCGGGCTAC
AAGAGAGTTGGCGGCGATGAAAACACAGCTCACGGAGTACAAGAGCGAAA
AGAACGCAAACCAGTATATCGCTCAATTCGCAGCGCGGAAGTCGATGCTG
CTCACCGGGCTAGACCAGGTATTTCTATTTTTTTCAACGTTGACTTTTTT
TTTCGCGTTTGGAAAAAGAGGGTTTCTTCGATTGTTTGTCCTCTACGGAC
ACCCGTAAGGAATGTACCTCTTTTTGTAGGGTAGTTGGTCATTCTCCAAA
CGTGTTTTTTTGTTTCAATCGTAGCTTGCGCACGCCTGCTGTCGGGATGC
GAGCATGGAATGGTGTGCATGATACTGCTATACTCTAGACAACCAAGGGT
AAGACACCCCAGTGCGCAAGGGGGCACGCTGTATTTAATCAGGAACTCAA
AGAATAGTTGATTTTTACCCTCCCTCCACCTCATCCGGCGCACACACACA
GCCACATCTAGAGGACACAAGGCATTACATATATATATATATATAAACAT
TATTTTTTATCAACTCCCAGGAGAAAAGTTGCACACATCCAACGGGTCAT
GACCCATACATTCTGTACACTACGCATCAGTGGGAGGCAATCATGTGCGG
ATCAATTGACACAAAGTATGCGCTGATGCTGTATAGCGTACGCATCAGCA
ATGGACAAACATGTACGAATCACTAGGAATGATTCGTCGAATGAAGCGCA
TCGGATGGATCATGAGCGGTGGTGTGGAAATTTGCAACTAAAAACCACAG
TAGCGTTGATGAGTTCGTGTTCGCCGAAAGTGCCCCTGAGTTGAATTGCC
ACGGCTGCGATTTTTGTTTACAATGGAATCAAGTAGTTTTTTTTGTTGTT
TTTTAAGTAGGATTACCGGTTTTATTCTCTCTCTCGGACTGACTCGGCTG
TCGGTGTGTGTTGTGCCCCCCCCCCCGCGCGCGCGCGCGCTTTCTTGCAG
GTGTCTGTTGAGCCAATATTACAGAGCGTAGTGAGGGGCAGCATTCGAGC
GGAAGATGTGATCAGAACCCAGCACGAGAGCCTCGTACAGAACATGGCGC
AGCAGCGGAATACCCTGCACAGCCTGGTGAGCGTTAACTTGGGTTACGAC
CCTGAAGGCCAAGCATGCAAGAGAGCTCCTTGAAAACAGACTTGTCCAAA
ATATTTTTTGCCCGAGTTTCTTTCTTGTTAGGGTATAAGGCGTTTTCGCG
AGCAGAGCTCGTGTGAGAGCTTCGTCGCTGCCATGTCTTCTTCTATCTGT
CTCTCTGTCTCATATACGTCGACGTTGGTGTGCTCCAAGTGCCAATGCGA
CATCTCGCTTGGATTCGATTTGAGGGGAAATTACATGCTCGTTTCAGCAC
TTGGGTGCTCTGTGCTAAAAACCATGACGTACGAAAAACGACCCGCCTCC
AACTTGCAGTAAGGTTGGGCCAGGAGTGCCAATGTTCCCGCAAGTTGCTT
GATGGCTCTTCTTCAAAATTACGACCGAACCCACGTCATGCCTTCCTTCC
GTCTCCGTTAGTCAGTGCCTCGCGTGCCGTGCGTTACGACGTGTCACGCC
TGCCCTTTACAAGTACTGCCGTGTAATCCGAGTGACTGCCAAATGCCATG
TTCTATTTGTACAACCGCCCGGTGCCTCTTTGCAGAGAAAACTCAAGAGA
GAACACGAGGATATGGAGGAGCGGATCGAGGCAGAATTGAAGGAGTCCCG
GTTGCTGTGCCGAGGCGAGAAGGAAAAGGTAGAGGACCGCCGAGGAACGG
GGACGCGTGCATTACTTGCATTGCTTTATTTTGTTGGACTTGTACCTCAC
AAAAAAGGGACCCGAAAAAGGGCTGTTGTGGGCCTGCGGGATTGAAGAGC
AATACAACCTTGTTTTCATGGTCTGACGCCCTTGAAAACCTCATCCTCGT
CATGAAATAATCAGGGGTGTTCTCGGTATTGCGCAGATCTTTGTTGTTGG
AATTTGTGAAACCGCTCTCGAAAGGATCATTATGAAGAAAAAAATGGGTC
TAGAAGCACCGCAACAGAGTGACTCTCCATGGGAATAACATCTAGGTGTT
GGTTTTTCCAACGTCCAAGTGAATACCCTGCTATCGCCACGGGAAAAAGT
TCACGGTGTGTAGAAATCGGTTTACCGCGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig11194:615..6994+ >mRNA_H-paniculata_contig11194.762.1 ID=mRNA_H-paniculata_contig11194.762.1|Name=mRNA_H-paniculata_contig11194.762.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2040bp|location=Sequence derived from alignment at H-paniculata_contig11194:615..6994+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGATTCCCAATGCTGCATCTGCTGCGAAGAGCTGGCAGGCGGCTT
GAGTGCGGCGCCGTGTGGGCATGTTATGCATACCACGTGATGTCAGATTC
CCAATGCTGCATCTGCTGCGAAGAGCTGGCAGGCGGCTTGAGTGCGGCGC
CGTGTGGGCATGTTATGCATACCACGTGCATTGGAGTATGGCACGCACAC
TCGACAAATCCCACTTGTCCCATCTGCAAAACCAAGCTCCCAGCGCAACT
GCTCAAGTTGTTTTTCGCAGTCAGCGAAACACCGTGTCGAGTCGAAAGCA
ATGATAGCTTAGCTTGCACGACTACTAACTCGCTCGGAACCGCCATGGGG
GGTTCAGGCGGCGCTGAGATCGGGGCGGGGGACAATTTTTCCGAAGGACA
ATCTCTCACCGCCGCGGACGGTCGCAGGCTTCGTTCCGAAGTGGAGTGCA
TTAAGCGGCATTGGAGTATGGCACGCACACTCGACAAATCCCACTTGTCC
CATCTGCAAAACCAAGCTCCCAGCGCAACTGCTCAAGTTGTTTTTCGCAG
TCAGCGAAACACCGTGTCGAGTCGAAAGCAATGATAGCTTAGCTTGCACG
ACTACTAACTCGCTCGGAACCGCCATGGGGGGTTCAGGCGGCGCTGAGAT
CGGGGCGGGGGACAATTTTTCCGAAGGACAATCTCTCACCGCCGCGGACG
GTCGCAGGCTTCGTTCCGAAGTGGAGTGCATTAAGCGGGTACTAGACGAG
AGCACGCTGGCTTGTCAGAAGTACCGGGACGACGTGAAGACTCTCACCGA
ACGGCTGCGGGAAACGAAGAGCAAGTGCGCAGTCAAGACGGTCGAGTTGG
AGGCTACAGTACAAGCGACAGAGAGCGAGCTGGAGCGGGTCAGGATTGAC
CTGGTACTAGACGAGAGCACGCTGGCTTGTCAGAAGTACCGGGACGACGT
GAAGACTCTCACCGAACGGCTGCGGGAAACGAAGAGCAAGTGCGCAGTCA
AGACGGTCGAGTTGGAGGCTACAGTACAAGCGACAGAGAGCGAGCTGGAG
CGGGTCAGGATTGACCTGAGCAAAAAACATAGGGAATGCTTCCGGGCTAC
AAGAGAGTTGGCGGCGATGAAAACACAGCTCACGGAGTACAAGAGCGAAA
AGAACGCAAACCAGTATATCGCTCAATTCGCAGCGCGGAAGTCGATGCTG
CTCACCGGGCTAGACCAGAGCAAAAAACATAGGGAATGCTTCCGGGCTAC
AAGAGAGTTGGCGGCGATGAAAACACAGCTCACGGAGTACAAGAGCGAAA
AGAACGCAAACCAGTATATCGCTCAATTCGCAGCGCGGAAGTCGATGCTG
CTCACCGGGCTAGACCAGGTGTCTGTTGAGCCAATATTACAGAGCGTAGT
GAGGGGCAGCATTCGAGCGGAAGATGTGATCAGAACCCAGCACGAGAGCC
TCGTACAGAACATGGCGCAGCAGCGGAATACCCTGCACAGCCTGGTGTCT
GTTGAGCCAATATTACAGAGCGTAGTGAGGGGCAGCATTCGAGCGGAAGA
TGTGATCAGAACCCAGCACGAGAGCCTCGTACAGAACATGGCGCAGCAGC
GGAATACCCTGCACAGCCTGAGAAAACTCAAGAGAGAACACGAGGATATG
GAGGAGCGGATCGAGGCAGAATTGAAGGAGTCCCGGTTGCTGTGCCGAGG
CGAGAAGGAAAAGGTAGAGGACCGCCGAGGAACGGGGACGCGTGCATTAC
TTGCATTGCTTTATTTTGTTGGACTTGTACCTCACAAAAAAGGGACCCGA
AAAAGGGCTGTTGTGGGCCTGCGGGATTGAAGAAAACTCAAGAGAGAACA
CGAGGATATGGAGGAGCGGATCGAGGCAGAATTGAAGGAGTCCCGGTTGC
TGTGCCGAGGCGAGAAGGAAAAGGTAGAGGACCGCCGAGGAACGGGGACG
CGTGCATTACTTGCATTGCTTTATTTTGTTGGACTTGTACCTCACAAAAA
AGGGACCCGAAAAAGGGCTGTTGTGGGCCTGCGGGATTGA back to top
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