mRNA_H-paniculata_contig2789.7618.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2789.7618.1
Unique NamemRNA_H-paniculata_contig2789.7618.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2789.7618.1 vs. uniprot
Match: A0A2N9HLT2_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HLT2_FAGSY)

HSP 1 Score: 136 bits (342), Expect = 7.610e-33
Identity = 79/247 (31.98%), Postives = 133/247 (53.85%), Query Frame = 1
Query:   28 EPKNHWEAQTSPEWEHWQRAEEVEMQGLIDNGVWTPVERPNNKLVVSTMMLYKRKLGEDGNLEKYKFRVVAHGNREIKGVHFHEASSPAPAAASTIMMLSLAVIQDWELRHVDFEEAYLQAHIDQEVFVDIPGP-KIVDNFLAD---LRSGHKLKDLGDAIYYLGCRITRDRKERKLKIDQHLYAKSMAERFGIT*TSVLPATMGNN-TMTKNDGSKTSEEAEEMRAFPYREAVGALIWAATMTRPD 753
            EP +  EA  SP+ + W  A + EM  +  N VW  V+ P  +  +    + K K   DG++++YK R+VA G  + +G+ + +  SP    AS  ++LS+   QD EL  +D + A+L   +D+E+++  P     +D+ +     L S  ++KD+G+A + LG +ITRDR ++ L + Q  Y K + ERF +  +  +   M    T++ +   K  EE  +M   PY  A+G+L++A   TRPD
Sbjct:   78 EPASFSEALHSPDRDEWMTAMQEEMSSMDKNNVWELVDLPPGRKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAAGNDMDSIVTTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKVPYASAIGSLMYAMLCTRPD 324          
BLAST of mRNA_H-paniculata_contig2789.7618.1 vs. uniprot
Match: A0A2N9F6S1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F6S1_FAGSY)

HSP 1 Score: 134 bits (337), Expect = 4.090e-32
Identity = 78/247 (31.58%), Postives = 133/247 (53.85%), Query Frame = 1
Query:   28 EPKNHWEAQTSPEWEHWQRAEEVEMQGLIDNGVWTPVERPNNKLVVSTMMLYKRKLGEDGNLEKYKFRVVAHGNREIKGVHFHEASSPAPAAASTIMMLSLAVIQDWELRHVDFEEAYLQAHIDQEVFVDIPGP-KIVDNFLAD---LRSGHKLKDLGDAIYYLGCRITRDRKERKLKIDQHLYAKSMAERFGIT*TSVLPATMGNN-TMTKNDGSKTSEEAEEMRAFPYREAVGALIWAATMTRPD 753
            EP +  EA  SP+ + W  A + EM  +  N VW  V+ P  +  +    + K K   DG++++YK R+VA G  + +G+ + +  SP    AS  ++LS+   QD EL  +D + A+L   +D+E+++  P     +D+ +     L S  ++KD+G+A + LG +ITRDR ++ L + Q  Y K + ERF +  +  +   M    T++ +   K  EE  +M   PY  A+G+L++A   TRP+
Sbjct:  661 EPASFSEALHSPDRDEWMTAMQEEMSSMDKNNVWELVDLPPGRKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAAGNDMDSIVTTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKVPYASAIGSLMYAMLCTRPN 907          
BLAST of mRNA_H-paniculata_contig2789.7618.1 vs. uniprot
Match: A0A2N9F7V6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F7V6_FAGSY)

HSP 1 Score: 128 bits (322), Expect = 4.190e-30
Identity = 79/275 (28.73%), Postives = 135/275 (49.09%), Query Frame = 1
Query:   28 EPKNHWEAQTSPEWEHWQRAEEVEMQGLIDNGVWTPVERPNNKLVVSTMMLYKRKLGEDGNLEKYKFRVVAHGNREIKGVHFHEASSPAPAAASTIMMLSLAVIQDWELRHVDFEEAYLQAHIDQEVFV----------DIPGPKIVDNFLADLRSGH----------------------KLKDLGDAIYYLGCRITRDRKERKLKIDQHLYAKSMAERFGIT*TSVLPATMGNN-TMTKNDGSKTSEEAEEMRAFPYREAVGALIWAATMTRPD 753
            EP +  EA  SP+ + W  A + EM  +  N VW  V+ P  +  +    + K K   DG++++YK R+VA G  + +G+ + +  SP    AS  ++LS+   QD EL  +D + A+L   +D+E+++          D+    +V N  + + + H                      ++KD+G+A + LG +ITRDR ++ L + Q  Y K + ERF +  +  +   M    T++ +   K  EE  +M   PY  A+G+L++A   TRPD
Sbjct:  683 EPASFSEALHSPDRDEWMTAMQEEMSSMDKNNVWELVDLPPGRKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAGFEALRDMSAKCVVSNVPSMVSNSHLGNAGNDMDSIVTTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKVPYASAIGSLMYAMLCTRPD 957          
BLAST of mRNA_H-paniculata_contig2789.7618.1 vs. uniprot
Match: A0A0J7KHD5_LASNI (Retrotransposon ty1-copia subclass n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KHD5_LASNI)

HSP 1 Score: 124 bits (312), Expect = 8.690e-29
Identity = 74/255 (29.02%), Postives = 128/255 (50.20%), Query Frame = 1
Query:   22 LVEPKNHWEAQTSPEWEHWQRAEEVEMQGLIDNGVWTPVERPNNKLVVSTMMLYKRKLGEDGNLEKYKFRVVAHGNREIKGVHFHEASSPAPAAASTIMMLSLAVIQDWELRHVDFEEAYLQAHIDQEVFVDIPG-----------PKIVDNFLADLRSGHKLKDLGDAIYYLGCRITRDRKERKLKIDQHLYAKSMAERFGIT*TSVLPATMGNNTMTKNDGSKTSEEAEEMRAFPYREAVGALIWAATMTRPD 753
            L EPK + EA   P+   WQ+A + E+  L+ NG W   + P  +  +S   ++K K G  G + +YK R+VA G  +   V + E  SP     S   +L++A  QD E+   D + A+L   +D+E+++ +P             K++D  + +         +G   Y++G  I RD   R +KI Q  Y   +AE+ G+     + +T   + +  +  S+ + +  +M   P+REAVG+L++AA ++RPD
Sbjct:  485 LDEPKTYGEAILRPDGATWQKAVDEELASLMKNGTWCEADLPPGRQAISAKWVFKLKRGPSGEIVRYKARLVARGYAQRPNVDYTETYSPVVRYESVRALLAIAAQQDMEIAQGDVKTAFLYGTLDEEIYMTVPDGAPNAGQVTAVDKVMDYLMTEFEV-----TIGSTEYFIGLEIKRDCIVRTIKISQRNYLLRVAEKIGLADAKGI-STPAESRVYLSTTSEDNNDKRDMEKVPFREAVGSLMFAACVSRPD 733          
BLAST of mRNA_H-paniculata_contig2789.7618.1 vs. uniprot
Match: A0A2N9J7K7_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J7K7_FAGSY)

HSP 1 Score: 124 bits (311), Expect = 1.160e-28
Identity = 75/247 (30.36%), Postives = 130/247 (52.63%), Query Frame = 1
Query:   28 EPKNHWEAQTSPEWEHWQRAEEVEMQGLIDNGVWTPVERPNNKLVVSTMMLYKRKLGEDGNLEKYKFRVVAHGNREIKGVHFHEASSPAPAAASTIMMLSLAVIQDWELRHVDFEEAYLQAHIDQEVFVDIP-GPKIVDNFLAD---LRSGHKLKDLGDAIYYLGCRITRDRKERKLKIDQHLYAKSMAERFGIT*TSVLPATMGNN-TMTKNDGSKTSEEAEEMRAFPYREAVGALIWAATMTRPD 753
            EP +  +A  SP+ + W  A + EM  +  N VW  V+ P  +  +    + K K   DG++++YK R+VA    + +G+ + +  SP    AS  ++LS+   QD EL  +D + A+L   +D+++++  P     +D+       L S  ++KD+G+A + LG +ITRDR ++ L + Q  Y K + ERF +  +  +   M    T++ +      EE  +M   PY  A+G+L++A   TRPD
Sbjct:  492 EPASFNQAFHSPDRDEWMTAIQEEMSSMNKNNVWELVDLPPRRKTIGNKWVLKVKRKADGSIDRYKARLVAKCYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKIAFLNRELDEKIYMAQPTAGNDMDSIATTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPNNDEEKNQMYKVPYASAIGSLMYAMLCTRPD 738          
BLAST of mRNA_H-paniculata_contig2789.7618.1 vs. uniprot
Match: A0A060SPD4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPD4_PYCCI)

HSP 1 Score: 117 bits (294), Expect = 2.270e-26
Identity = 79/319 (24.76%), Postives = 138/319 (43.26%), Query Frame = 1
Query:   25 VEPKNHWEAQTSPEWEHWQRAEEVEMQGLIDNGVWTPVERPNNKLVVSTMMLYKRKLGEDGNLEKYKFRVVAHGNREIKGVHFHEASSPAPAAASTIMMLSLAVIQDWELRHVDFEEAYLQAHIDQEVFVDIP---------------------------------------------------------------------------GPKIVDNFLADLRSGHKLKDLGDAIYYLGCRITRDRKERKLKIDQHLYAKSMAERFGIT*TSVLPATMG-NNTMTKNDGSKTSEEAEEMRAFPYREAVGALIWAATMTRPD 753
            VEP ++ EA+  P+W  WQ A + E+  L+ NG W  V RP++  VV +  + + K    G ++KYK R+VA G  ++ GV +++  +P    +S  ++L++A    W     DF  AYL + +D++V+++ P                                                                             +++D+  + + + +K+ DLG   + LG +I+ D +   L + QH Y +++  RF  T    +   M  +  ++K    ++  E   MR  PYREA+GAL++AA  TRPD
Sbjct:  797 VEP-SYAEAKKRPDWPKWQEAIKAELDSLVANGTWRIVPRPSSGNVVDSKWVLRVKKNAAGEIDKYKARLVARGFTQVYGVDYYDTFAPVAKLSSIRLLLAIAARNGWAADSFDFNSAYLNSKLDEDVYLEQPPDHAFADRKAFVLKLEKALYGLKQGGRKWYETLCAALGRLGFTRVEADWGVFYKHEGEHLIVLAVHVDDCLLTGSSRRLLDDTKSKIGTVYKITDLGPVSWLLGIKISCDLEAGTLSLSQHAYIEALLARFNFTDLKPVSMPMDPHQLLSKTQCPESPAEVARMRRVPYREAIGALMYAALGTRPD 1114          
BLAST of mRNA_H-paniculata_contig2789.7618.1 vs. uniprot
Match: A0A438GQ37_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GQ37_VITVI)

HSP 1 Score: 115 bits (288), Expect = 1.310e-25
Identity = 82/269 (30.48%), Postives = 132/269 (49.07%), Query Frame = 1
Query:    4 EMRSDLLVE-PKNHWEAQTSPEWEHWQRAEEVEMQGLIDNGVWTPVERPNNKLVVSTMMLYKRKLGEDGNLEKYKFRVVAHGNREIKGVHFHEASSPAPAAASTIMMLSLAVIQDWELRHVDFEEAYLQAHIDQEVFV------------DIPGPKIVDNFLADLR---SGH-KLKDLGDAIYYLGCRITRDRKERKLKIDQHLYAKSMAERFGIT*TSV--LPATMGNNTMTKNDGSKTSEEAEEMRAFPYREAVGALIWAATMTRPD 753
            E+ S ++ + P N  +A  S   + W  A   E + + DN VW  V  P     +    ++K K   +GN+E+YK R++A G  + +G+ F E  SP     S  ++++L    D EL  +D + A+L   ID+ +++            DI       + L D +   S H ++KDLGDA + LG +I RDR    L + Q  Y   + +R+G+  +     P   G+   + N   K S E++EM+  PY  AVG+L++A   TRPD
Sbjct:  388 EVESGMMEDDPINFQQAMKSSNSQKWIEAMNEEYKSMQDNKVWELVPLPVGTKPIGCKWIFKTKRDSNGNVERYKARLIAKGFTQKEGIDFKETFSPVSTKDSFRIIMALVAHYDLELHQMDVKTAFLNGDIDETIYMWSKYIFLVLYVDDILLATNDISILHDTKRFLSKHFEMKDLGDASFVLGIQIHRDRSRGILGLSQRTYIDKVLQRYGMQNSKPGDTPVAKGDK-FSLNQCPKNSLESQEMQKIPYASAVGSLMYAQVCTRPD 655          
BLAST of mRNA_H-paniculata_contig2789.7618.1 vs. uniprot
Match: A0A8J5YQU7_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YQU7_9ROSI)

HSP 1 Score: 112 bits (279), Expect = 2.080e-24
Identity = 86/293 (29.35%), Postives = 135/293 (46.08%), Query Frame = 1
Query:   16 DLLV----EPKNHWEAQTSPEWEHWQRAEEVEMQGLIDNGVWTPVERPNNKLVVSTMMLYKRKLGEDGNLEKYKFRVVAHGNREIKGVHFHEASSPAPAAASTIMMLSLAVIQDWELRHVDFEEAYLQAHIDQEVFVDIP----GPK------------------------------IVDNFLADLRS-------GHKLKDLGDAIYYLGCRITRDRKERKLKIDQHLYAKSMAERFGIT*TS--VLPATMGNNTMTKNDGSKTSEEAEEMRAFPYREAVGALIWAATMTRPD 753
            D+L+    EP+ + E  TSP+ E W  A   EM  + +N VWT V+ P     +    ++K+K   DGN++ YK R+VA G R+I GV + +A SPA    S  ++L + +         D + A+L   ++++V++  P     PK                              I+ N +  L+S          +KDLG+A Y L  +I RDR  R L + Q  Y   + ERF +  +    LP   G + ++K     TS+E E M   PY  A+G++++A   TR D
Sbjct:  538 DILLIDQDEPRTYQEVVTSPDSEKWLEAMRSEMDSMYENQVWTLVDPPEGVKPIGCKWVFKKKTDMDGNVQTYKGRLVAKGFRQIHGVDYDKAFSPAAMFKSIRILLVITM---------DVKTAFLNGKLEEDVYMTQPEGFVDPKDAGKIYEPCVYTKISGNTITFLVLYVDDILIMGNDIPTLQSIKTWLGSCFSMKDLGEATYILEVKIYRDRSRRLLGLSQGTYIDKVLERFNMEESKRGFLPMRHGIS-LSKEMCPSTSQERERMSKIPYASAIGSIMYAMLCTRSD 820          
BLAST of mRNA_H-paniculata_contig2789.7618.1 vs. uniprot
Match: A0A2N9EUE0_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EUE0_FAGSY)

HSP 1 Score: 107 bits (266), Expect = 1.180e-22
Identity = 75/274 (27.37%), Postives = 127/274 (46.35%), Query Frame = 1
Query:   28 EPKNHWEAQTSPEWEHWQRAEEVEMQGLIDNGVWTPVERPNNKLVVSTMMLYKRKLGEDGNLEKYKFRVVAHGNREIKGVHFHEASSPAPAAASTIMMLSLAVIQDWELRHVDFEEAYLQAHIDQEVFVDIPG-------------------PK--------IVDNFLAD-------------LRSGHKLKDLGDAIYYLGCRITRDRKERKLKIDQHLYAKSMAERFGIT*TSVLPATMGNN-TMTKNDGSKTSEEAEEMRAFPYREAVGALI 726
            EP +  EA  SP+ + W  A + EM  +  N VW  V+ P  +  +    + K K   DG++++YK R+VA G  + +G+ + +  SP    AS  ++LS+   QD EL  +D + A+L   +D+E+++  P                    PK         VD+ L               L S  ++KD+G+A + LG +ITRDR ++ L + Q  Y K + ERF +  +  +   M    T++ +   K  EE  +M    +  A+ A++
Sbjct:  795 EPASFSEALHSPDRDEWMTAMQEEMSSMDKNNVWELVDLPPGRKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAGFEAKGHERKKTIACILNDPKRSILILSLYVDDILLAGNDMDSIVTTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKLAWLVAIRAIL 1068          
BLAST of mRNA_H-paniculata_contig2789.7618.1 vs. uniprot
Match: A0A2N9F1W8_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F1W8_FAGSY)

HSP 1 Score: 105 bits (263), Expect = 2.890e-22
Identity = 77/250 (30.80%), Postives = 120/250 (48.00%), Query Frame = 1
Query:   70 EHWQRAEEVEMQGLIDNGVWTPVERPNNKLVVSTMMLYKRKLGEDGNLEKYKFRVVAHGNREIKGVHFHEASSPAPAAASTIMMLSLAVIQDWELRHVD--FEEAYLQAHIDQEVFVDIPGPKI------VDNFLAD-------------LRSGHKLKDLGDAIYYLGCRITRDRKERKLKIDQHLYAKSMAERFGIT*TSVLPATMGNNTMTKNDGSKTSE-EAEEMRAFPYREAVGALIWAATMTRPD 753
            E W +A   E+  +  N VW   E P  +  V    + ++K   DG+L+KYK R+VA G  +  G+ F +  SP    AS  +++ +A   D EL  +D   +  Y    +D  V+V     K+      VD+ L               L S  ++KD+G A Y LG RI+RDR  + + +DQ  Y K + +RF +     +   +    +       T++ E EEM+A PY +AVG+L++A T TR D
Sbjct:  682 EQWLKAMHEELDSISKNEVWDLTELPTGRKPVGCKWVLRKKYKADGSLDKYKARLVAKGFTQQPGMDFVDTYSPVAKFASVRIIMVVASRLDLELHQLDAILDIGYEMNPLDHCVYVWRDKEKLALLSIYVDDILLASNSPDMMKETKFCLGSKFEMKDMGPANYVLGIRISRDRDSKLIYLDQENYLKKVLKRFKMKDCRPVSTPVSKGMILNKSMCPTNKIELEEMKAVPYAQAVGSLMYAMTSTRLD 931          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2789.7618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9HLT2_FAGSY7.610e-3331.98Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9F6S1_FAGSY4.090e-3231.58Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9F7V6_FAGSY4.190e-3028.73Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A0J7KHD5_LASNI8.690e-2929.02Retrotransposon ty1-copia subclass n=1 Tax=Lasius ... [more]
A0A2N9J7K7_FAGSY1.160e-2830.36Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A060SPD4_PYCCI2.270e-2624.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A438GQ37_VITVI1.310e-2530.48Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J5YQU7_9ROSI2.080e-2429.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9EUE0_FAGSY1.180e-2227.37Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9F1W8_FAGSY2.890e-2230.80CCHC-type domain-containing protein n=1 Tax=Fagus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2789contigH-paniculata_contig2789:17489..18463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score98.6
Seed ortholog evalue3.5e-18
Seed eggNOG ortholog71139.XP_010066627.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3GBWZ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size753
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2789.7618.1prot_H-paniculata_contig2789.7618.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2789 17495..18313 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929842.8958855-UTR-H-paniculata_contig2789:17488..174941622929842.8958855-UTR-H-paniculata_contig2789:17488..17494Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2789 17489..17494 +
1691481035.5066772-UTR-H-paniculata_contig2789:17488..174941691481035.5066772-UTR-H-paniculata_contig2789:17488..17494Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2789 17489..17494 +
1622929842.941667-UTR-H-paniculata_contig2789:18313..184631622929842.941667-UTR-H-paniculata_contig2789:18313..18463Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2789 18314..18463 +
1691481035.5392218-UTR-H-paniculata_contig2789:18313..184631691481035.5392218-UTR-H-paniculata_contig2789:18313..18463Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2789 18314..18463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929842.9077258-CDS-H-paniculata_contig2789:17494..179111622929842.9077258-CDS-H-paniculata_contig2789:17494..17911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2789 17495..17911 +
1691481035.5191529-CDS-H-paniculata_contig2789:17494..179111691481035.5191529-CDS-H-paniculata_contig2789:17494..17911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2789 17495..17911 +
1622929842.9211154-CDS-H-paniculata_contig2789:18133..183131622929842.9211154-CDS-H-paniculata_contig2789:18133..18313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2789 18134..18313 +
1691481035.529433-CDS-H-paniculata_contig2789:18133..183131691481035.529433-CDS-H-paniculata_contig2789:18133..18313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2789 18134..18313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2789.7618.1

>prot_H-paniculata_contig2789.7618.1 ID=prot_H-paniculata_contig2789.7618.1|Name=mRNA_H-paniculata_contig2789.7618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp
MRSDLLVEPKNHWEAQTSPEWEHWQRAEEVEMQGLIDNGVWTPVERPNNK
LVVSTMMLYKRKLGEDGNLEKYKFRVVAHGNREIKGVHFHEASSPAPAAA
STIMMLSLAVIQDWELRHVDFEEAYLQAHIDQEVFVDIPGPKIVDNFLAD
LRSGHKLKDLGDAIYYLGCRITRDRKERKLKIDQHLYAKSMAERFGIT*
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mRNA from alignment at H-paniculata_contig2789:17489..18463+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2789.7618.1 ID=mRNA_H-paniculata_contig2789.7618.1|Name=mRNA_H-paniculata_contig2789.7618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=975bp|location=Sequence derived from alignment at H-paniculata_contig2789:17489..18463+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAAATGAGGAGCGACCTCCTCGTGGAGCCCAAGAATCACTGGGAGGC GCAGACGTCGCCGGAGTGGGAGCACTGGCAAAGAGCGGAGGAAGTCGAGA TGCAAGGCCTCATCGACAACGGCGTTTGGACGCCGGTGGAGCGCCCGAAT AACAAGCTGGTCGTGAGCACGATGATGCTCTACAAAAGGAAACTCGGCGA GGATGGTAACTTGGAGAAATACAAGTTCCGCGTGGTCGCCCACGGGAACC GGGAGATCAAGGGCGTCCACTTCCATGAAGCTTCGTCCCCTGCACCCGCA GCAGCCAGCACAATAATGATGTTGTCGCTTGCGGTAATCCAGGACTGGGA GCTTCGGCACGTCGACTTTGAAGAAGCGTATCTACAGGCACACATCGACC AGGAGGTTTTCGTCGATATTCCCGTAGAATACCGGGAGTTCCCAGGAGCG CTGGGGCGCCTCGACAAGGCAATCTACGGATTGATGCAAGCCGGCAGATG CTCGAGTATGAAGGCTACCACGGACCTCACGGCGAAAGGGTTCGAGCAAT CGCACGCCGTCTCGTACGTGTTCCGCAAGATCGTGTACGGGGAGGTGGTC ACAGTGAACATCATATACGTGGACGACCTTCTGATCAGCCCCAAGGGACC CAAAATCGTGGACAATTTCCTGGCCGACCTGCGATCGGGTCACAAGCTTA AAGACTTGGGAGATGCAATATACTATTTAGGATGCCGCATCACCCGCGAT AGGAAAGAGAGGAAGCTCAAGATCGATCAGCACCTCTACGCGAAGTCCAT GGCCGAGCGTTTCGGGATAACCTAGACCAGCGTGCTCCCGGCCACGATGG GAAACAACACTATGACCAAAAACGACGGGTCGAAGACCTCAGAAGAAGCC GAAGAGATGCGGGCGTTCCCATACAGGGAGGCAGTGGGGGCGCTCATCTG GGCGGCGACAATGACGCGACCCGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2789:17489..18463+

>mRNA_H-paniculata_contig2789.7618.1 ID=mRNA_H-paniculata_contig2789.7618.1|Name=mRNA_H-paniculata_contig2789.7618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at H-paniculata_contig2789:17489..18463+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGAGCGACCTCCTCGTGGAGCCCAAGAATCACTGGGAGGCGCAGAC
GTCGCCGGAGTGGGAGCACTGGCAAAGAGCGGAGGAAGTCGAGATGCAAG
GCCTCATCGACAACGGCGTTTGGACGCCGGTGGAGCGCCCGAATAACAAG
CTGGTCGTGAGCACGATGATGCTCTACAAAAGGAAACTCGGCGAGGATGG
TAACTTGGAGAAATACAAGTTCCGCGTGGTCGCCCACGGGAACCGGGAGA
TCAAGGGCGTCCACTTCCATGAAGCTTCGTCCCCTGCACCCGCAGCAGCC
AGCACAATAATGATGTTGTCGCTTGCGGTAATCCAGGACTGGGAGCTTCG
GCACGTCGACTTTGAAGAAGCGTATCTACAGGCACACATCGACCAGGAGG
TTTTCGTCGATATTCCCATGAGGAGCGACCTCCTCGTGGAGCCCAAGAAT
CACTGGGAGGCGCAGACGTCGCCGGAGTGGGAGCACTGGCAAAGAGCGGA
GGAAGTCGAGATGCAAGGCCTCATCGACAACGGCGTTTGGACGCCGGTGG
AGCGCCCGAATAACAAGCTGGTCGTGAGCACGATGATGCTCTACAAAAGG
AAACTCGGCGAGGATGGTAACTTGGAGAAATACAAGTTCCGCGTGGTCGC
CCACGGGAACCGGGAGATCAAGGGCGTCCACTTCCATGAAGCTTCGTCCC
CTGCACCCGCAGCAGCCAGCACAATAATGATGTTGTCGCTTGCGGTAATC
CAGGACTGGGAGCTTCGGCACGTCGACTTTGAAGAAGCGTATCTACAGGC
ACACATCGACCAGGAGGTTTTCGTCGATATTCCCGGACCCAAAATCGTGG
ACAATTTCCTGGCCGACCTGCGATCGGGTCACAAGCTTAAAGACTTGGGA
GATGCAATATACTATTTAGGATGCCGCATCACCCGCGATAGGAAAGAGAG
GAAGCTCAAGATCGATCAGCACCTCTACGCGAAGTCCATGGCCGAGCGTT
TCGGGATAACCTAGGGACCCAAAATCGTGGACAATTTCCTGGCCGACCTG
CGATCGGGTCACAAGCTTAAAGACTTGGGAGATGCAATATACTATTTAGG
ATGCCGCATCACCCGCGATAGGAAAGAGAGGAAGCTCAAGATCGATCAGC
ACCTCTACGCGAAGTCCATGGCCGAGCGTTTCGGGATAACCTAG
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