mRNA_H-paniculata_contig2789.7618.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2789.7618.1 vs. uniprot
Match: A0A2N9HLT2_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HLT2_FAGSY) HSP 1 Score: 136 bits (342), Expect = 7.610e-33 Identity = 79/247 (31.98%), Postives = 133/247 (53.85%), Query Frame = 1
Query: 28 EPKNHWEAQTSPEWEHWQRAEEVEMQGLIDNGVWTPVERPNNKLVVSTMMLYKRKLGEDGNLEKYKFRVVAHGNREIKGVHFHEASSPAPAAASTIMMLSLAVIQDWELRHVDFEEAYLQAHIDQEVFVDIPGP-KIVDNFLAD---LRSGHKLKDLGDAIYYLGCRITRDRKERKLKIDQHLYAKSMAERFGIT*TSVLPATMGNN-TMTKNDGSKTSEEAEEMRAFPYREAVGALIWAATMTRPD 753
EP + EA SP+ + W A + EM + N VW V+ P + + + K K DG++++YK R+VA G + +G+ + + SP AS ++LS+ QD EL +D + A+L +D+E+++ P +D+ + L S ++KD+G+A + LG +ITRDR ++ L + Q Y K + ERF + + + M T++ + K EE +M PY A+G+L++A TRPD
Sbjct: 78 EPASFSEALHSPDRDEWMTAMQEEMSSMDKNNVWELVDLPPGRKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAAGNDMDSIVTTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKVPYASAIGSLMYAMLCTRPD 324
BLAST of mRNA_H-paniculata_contig2789.7618.1 vs. uniprot
Match: A0A2N9F6S1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F6S1_FAGSY) HSP 1 Score: 134 bits (337), Expect = 4.090e-32 Identity = 78/247 (31.58%), Postives = 133/247 (53.85%), Query Frame = 1
Query: 28 EPKNHWEAQTSPEWEHWQRAEEVEMQGLIDNGVWTPVERPNNKLVVSTMMLYKRKLGEDGNLEKYKFRVVAHGNREIKGVHFHEASSPAPAAASTIMMLSLAVIQDWELRHVDFEEAYLQAHIDQEVFVDIPGP-KIVDNFLAD---LRSGHKLKDLGDAIYYLGCRITRDRKERKLKIDQHLYAKSMAERFGIT*TSVLPATMGNN-TMTKNDGSKTSEEAEEMRAFPYREAVGALIWAATMTRPD 753
EP + EA SP+ + W A + EM + N VW V+ P + + + K K DG++++YK R+VA G + +G+ + + SP AS ++LS+ QD EL +D + A+L +D+E+++ P +D+ + L S ++KD+G+A + LG +ITRDR ++ L + Q Y K + ERF + + + M T++ + K EE +M PY A+G+L++A TRP+
Sbjct: 661 EPASFSEALHSPDRDEWMTAMQEEMSSMDKNNVWELVDLPPGRKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAAGNDMDSIVTTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKVPYASAIGSLMYAMLCTRPN 907
BLAST of mRNA_H-paniculata_contig2789.7618.1 vs. uniprot
Match: A0A2N9F7V6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F7V6_FAGSY) HSP 1 Score: 128 bits (322), Expect = 4.190e-30 Identity = 79/275 (28.73%), Postives = 135/275 (49.09%), Query Frame = 1
Query: 28 EPKNHWEAQTSPEWEHWQRAEEVEMQGLIDNGVWTPVERPNNKLVVSTMMLYKRKLGEDGNLEKYKFRVVAHGNREIKGVHFHEASSPAPAAASTIMMLSLAVIQDWELRHVDFEEAYLQAHIDQEVFV----------DIPGPKIVDNFLADLRSGH----------------------KLKDLGDAIYYLGCRITRDRKERKLKIDQHLYAKSMAERFGIT*TSVLPATMGNN-TMTKNDGSKTSEEAEEMRAFPYREAVGALIWAATMTRPD 753
EP + EA SP+ + W A + EM + N VW V+ P + + + K K DG++++YK R+VA G + +G+ + + SP AS ++LS+ QD EL +D + A+L +D+E+++ D+ +V N + + + H ++KD+G+A + LG +ITRDR ++ L + Q Y K + ERF + + + M T++ + K EE +M PY A+G+L++A TRPD
Sbjct: 683 EPASFSEALHSPDRDEWMTAMQEEMSSMDKNNVWELVDLPPGRKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAGFEALRDMSAKCVVSNVPSMVSNSHLGNAGNDMDSIVTTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKVPYASAIGSLMYAMLCTRPD 957
BLAST of mRNA_H-paniculata_contig2789.7618.1 vs. uniprot
Match: A0A0J7KHD5_LASNI (Retrotransposon ty1-copia subclass n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KHD5_LASNI) HSP 1 Score: 124 bits (312), Expect = 8.690e-29 Identity = 74/255 (29.02%), Postives = 128/255 (50.20%), Query Frame = 1
Query: 22 LVEPKNHWEAQTSPEWEHWQRAEEVEMQGLIDNGVWTPVERPNNKLVVSTMMLYKRKLGEDGNLEKYKFRVVAHGNREIKGVHFHEASSPAPAAASTIMMLSLAVIQDWELRHVDFEEAYLQAHIDQEVFVDIPG-----------PKIVDNFLADLRSGHKLKDLGDAIYYLGCRITRDRKERKLKIDQHLYAKSMAERFGIT*TSVLPATMGNNTMTKNDGSKTSEEAEEMRAFPYREAVGALIWAATMTRPD 753
L EPK + EA P+ WQ+A + E+ L+ NG W + P + +S ++K K G G + +YK R+VA G + V + E SP S +L++A QD E+ D + A+L +D+E+++ +P K++D + + +G Y++G I RD R +KI Q Y +AE+ G+ + +T + + + S+ + + +M P+REAVG+L++AA ++RPD
Sbjct: 485 LDEPKTYGEAILRPDGATWQKAVDEELASLMKNGTWCEADLPPGRQAISAKWVFKLKRGPSGEIVRYKARLVARGYAQRPNVDYTETYSPVVRYESVRALLAIAAQQDMEIAQGDVKTAFLYGTLDEEIYMTVPDGAPNAGQVTAVDKVMDYLMTEFEV-----TIGSTEYFIGLEIKRDCIVRTIKISQRNYLLRVAEKIGLADAKGI-STPAESRVYLSTTSEDNNDKRDMEKVPFREAVGSLMFAACVSRPD 733
BLAST of mRNA_H-paniculata_contig2789.7618.1 vs. uniprot
Match: A0A2N9J7K7_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J7K7_FAGSY) HSP 1 Score: 124 bits (311), Expect = 1.160e-28 Identity = 75/247 (30.36%), Postives = 130/247 (52.63%), Query Frame = 1
Query: 28 EPKNHWEAQTSPEWEHWQRAEEVEMQGLIDNGVWTPVERPNNKLVVSTMMLYKRKLGEDGNLEKYKFRVVAHGNREIKGVHFHEASSPAPAAASTIMMLSLAVIQDWELRHVDFEEAYLQAHIDQEVFVDIP-GPKIVDNFLAD---LRSGHKLKDLGDAIYYLGCRITRDRKERKLKIDQHLYAKSMAERFGIT*TSVLPATMGNN-TMTKNDGSKTSEEAEEMRAFPYREAVGALIWAATMTRPD 753
EP + +A SP+ + W A + EM + N VW V+ P + + + K K DG++++YK R+VA + +G+ + + SP AS ++LS+ QD EL +D + A+L +D+++++ P +D+ L S ++KD+G+A + LG +ITRDR ++ L + Q Y K + ERF + + + M T++ + EE +M PY A+G+L++A TRPD
Sbjct: 492 EPASFNQAFHSPDRDEWMTAIQEEMSSMNKNNVWELVDLPPRRKTIGNKWVLKVKRKADGSIDRYKARLVAKCYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKIAFLNRELDEKIYMAQPTAGNDMDSIATTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPNNDEEKNQMYKVPYASAIGSLMYAMLCTRPD 738
BLAST of mRNA_H-paniculata_contig2789.7618.1 vs. uniprot
Match: A0A060SPD4_PYCCI (Integrase catalytic domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SPD4_PYCCI) HSP 1 Score: 117 bits (294), Expect = 2.270e-26 Identity = 79/319 (24.76%), Postives = 138/319 (43.26%), Query Frame = 1
Query: 25 VEPKNHWEAQTSPEWEHWQRAEEVEMQGLIDNGVWTPVERPNNKLVVSTMMLYKRKLGEDGNLEKYKFRVVAHGNREIKGVHFHEASSPAPAAASTIMMLSLAVIQDWELRHVDFEEAYLQAHIDQEVFVDIP---------------------------------------------------------------------------GPKIVDNFLADLRSGHKLKDLGDAIYYLGCRITRDRKERKLKIDQHLYAKSMAERFGIT*TSVLPATMG-NNTMTKNDGSKTSEEAEEMRAFPYREAVGALIWAATMTRPD 753
VEP ++ EA+ P+W WQ A + E+ L+ NG W V RP++ VV + + + K G ++KYK R+VA G ++ GV +++ +P +S ++L++A W DF AYL + +D++V+++ P +++D+ + + + +K+ DLG + LG +I+ D + L + QH Y +++ RF T + M + ++K ++ E MR PYREA+GAL++AA TRPD
Sbjct: 797 VEP-SYAEAKKRPDWPKWQEAIKAELDSLVANGTWRIVPRPSSGNVVDSKWVLRVKKNAAGEIDKYKARLVARGFTQVYGVDYYDTFAPVAKLSSIRLLLAIAARNGWAADSFDFNSAYLNSKLDEDVYLEQPPDHAFADRKAFVLKLEKALYGLKQGGRKWYETLCAALGRLGFTRVEADWGVFYKHEGEHLIVLAVHVDDCLLTGSSRRLLDDTKSKIGTVYKITDLGPVSWLLGIKISCDLEAGTLSLSQHAYIEALLARFNFTDLKPVSMPMDPHQLLSKTQCPESPAEVARMRRVPYREAIGALMYAALGTRPD 1114
BLAST of mRNA_H-paniculata_contig2789.7618.1 vs. uniprot
Match: A0A438GQ37_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GQ37_VITVI) HSP 1 Score: 115 bits (288), Expect = 1.310e-25 Identity = 82/269 (30.48%), Postives = 132/269 (49.07%), Query Frame = 1
Query: 4 EMRSDLLVE-PKNHWEAQTSPEWEHWQRAEEVEMQGLIDNGVWTPVERPNNKLVVSTMMLYKRKLGEDGNLEKYKFRVVAHGNREIKGVHFHEASSPAPAAASTIMMLSLAVIQDWELRHVDFEEAYLQAHIDQEVFV------------DIPGPKIVDNFLADLR---SGH-KLKDLGDAIYYLGCRITRDRKERKLKIDQHLYAKSMAERFGIT*TSV--LPATMGNNTMTKNDGSKTSEEAEEMRAFPYREAVGALIWAATMTRPD 753
E+ S ++ + P N +A S + W A E + + DN VW V P + ++K K +GN+E+YK R++A G + +G+ F E SP S ++++L D EL +D + A+L ID+ +++ DI + L D + S H ++KDLGDA + LG +I RDR L + Q Y + +R+G+ + P G+ + N K S E++EM+ PY AVG+L++A TRPD
Sbjct: 388 EVESGMMEDDPINFQQAMKSSNSQKWIEAMNEEYKSMQDNKVWELVPLPVGTKPIGCKWIFKTKRDSNGNVERYKARLIAKGFTQKEGIDFKETFSPVSTKDSFRIIMALVAHYDLELHQMDVKTAFLNGDIDETIYMWSKYIFLVLYVDDILLATNDISILHDTKRFLSKHFEMKDLGDASFVLGIQIHRDRSRGILGLSQRTYIDKVLQRYGMQNSKPGDTPVAKGDK-FSLNQCPKNSLESQEMQKIPYASAVGSLMYAQVCTRPD 655
BLAST of mRNA_H-paniculata_contig2789.7618.1 vs. uniprot
Match: A0A8J5YQU7_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YQU7_9ROSI) HSP 1 Score: 112 bits (279), Expect = 2.080e-24 Identity = 86/293 (29.35%), Postives = 135/293 (46.08%), Query Frame = 1
Query: 16 DLLV----EPKNHWEAQTSPEWEHWQRAEEVEMQGLIDNGVWTPVERPNNKLVVSTMMLYKRKLGEDGNLEKYKFRVVAHGNREIKGVHFHEASSPAPAAASTIMMLSLAVIQDWELRHVDFEEAYLQAHIDQEVFVDIP----GPK------------------------------IVDNFLADLRS-------GHKLKDLGDAIYYLGCRITRDRKERKLKIDQHLYAKSMAERFGIT*TS--VLPATMGNNTMTKNDGSKTSEEAEEMRAFPYREAVGALIWAATMTRPD 753
D+L+ EP+ + E TSP+ E W A EM + +N VWT V+ P + ++K+K DGN++ YK R+VA G R+I GV + +A SPA S ++L + + D + A+L ++++V++ P PK I+ N + L+S +KDLG+A Y L +I RDR R L + Q Y + ERF + + LP G + ++K TS+E E M PY A+G++++A TR D
Sbjct: 538 DILLIDQDEPRTYQEVVTSPDSEKWLEAMRSEMDSMYENQVWTLVDPPEGVKPIGCKWVFKKKTDMDGNVQTYKGRLVAKGFRQIHGVDYDKAFSPAAMFKSIRILLVITM---------DVKTAFLNGKLEEDVYMTQPEGFVDPKDAGKIYEPCVYTKISGNTITFLVLYVDDILIMGNDIPTLQSIKTWLGSCFSMKDLGEATYILEVKIYRDRSRRLLGLSQGTYIDKVLERFNMEESKRGFLPMRHGIS-LSKEMCPSTSQERERMSKIPYASAIGSIMYAMLCTRSD 820
BLAST of mRNA_H-paniculata_contig2789.7618.1 vs. uniprot
Match: A0A2N9EUE0_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EUE0_FAGSY) HSP 1 Score: 107 bits (266), Expect = 1.180e-22 Identity = 75/274 (27.37%), Postives = 127/274 (46.35%), Query Frame = 1
Query: 28 EPKNHWEAQTSPEWEHWQRAEEVEMQGLIDNGVWTPVERPNNKLVVSTMMLYKRKLGEDGNLEKYKFRVVAHGNREIKGVHFHEASSPAPAAASTIMMLSLAVIQDWELRHVDFEEAYLQAHIDQEVFVDIPG-------------------PK--------IVDNFLAD-------------LRSGHKLKDLGDAIYYLGCRITRDRKERKLKIDQHLYAKSMAERFGIT*TSVLPATMGNN-TMTKNDGSKTSEEAEEMRAFPYREAVGALI 726
EP + EA SP+ + W A + EM + N VW V+ P + + + K K DG++++YK R+VA G + +G+ + + SP AS ++LS+ QD EL +D + A+L +D+E+++ P PK VD+ L L S ++KD+G+A + LG +ITRDR ++ L + Q Y K + ERF + + + M T++ + K EE +M + A+ A++
Sbjct: 795 EPASFSEALHSPDRDEWMTAMQEEMSSMDKNNVWELVDLPPGRKTIGNKWVLKVKRKADGSIDRYKARLVAKGYTQREGIDYEDTFSPVVRFASIRLILSIVAKQDLELFQMDVKTAFLNGELDEEIYMAQPAGFEAKGHERKKTIACILNDPKRSILILSLYVDDILLAGNDMDSIVTTKKWLSSTFEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKLAWLVAIRAIL 1068
BLAST of mRNA_H-paniculata_contig2789.7618.1 vs. uniprot
Match: A0A2N9F1W8_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F1W8_FAGSY) HSP 1 Score: 105 bits (263), Expect = 2.890e-22 Identity = 77/250 (30.80%), Postives = 120/250 (48.00%), Query Frame = 1
Query: 70 EHWQRAEEVEMQGLIDNGVWTPVERPNNKLVVSTMMLYKRKLGEDGNLEKYKFRVVAHGNREIKGVHFHEASSPAPAAASTIMMLSLAVIQDWELRHVD--FEEAYLQAHIDQEVFVDIPGPKI------VDNFLAD-------------LRSGHKLKDLGDAIYYLGCRITRDRKERKLKIDQHLYAKSMAERFGIT*TSVLPATMGNNTMTKNDGSKTSE-EAEEMRAFPYREAVGALIWAATMTRPD 753
E W +A E+ + N VW E P + V + ++K DG+L+KYK R+VA G + G+ F + SP AS +++ +A D EL +D + Y +D V+V K+ VD+ L L S ++KD+G A Y LG RI+RDR + + +DQ Y K + +RF + + + + T++ E EEM+A PY +AVG+L++A T TR D
Sbjct: 682 EQWLKAMHEELDSISKNEVWDLTELPTGRKPVGCKWVLRKKYKADGSLDKYKARLVAKGFTQQPGMDFVDTYSPVAKFASVRIIMVVASRLDLELHQLDAILDIGYEMNPLDHCVYVWRDKEKLALLSIYVDDILLASNSPDMMKETKFCLGSKFEMKDMGPANYVLGIRISRDRDSKLIYLDQENYLKKVLKRFKMKDCRPVSTPVSKGMILNKSMCPTNKIELEEMKAVPYAQAVGSLMYAMTSTRLD 931 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2789.7618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2789.7618.1 >prot_H-paniculata_contig2789.7618.1 ID=prot_H-paniculata_contig2789.7618.1|Name=mRNA_H-paniculata_contig2789.7618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp MRSDLLVEPKNHWEAQTSPEWEHWQRAEEVEMQGLIDNGVWTPVERPNNKback to top mRNA from alignment at H-paniculata_contig2789:17489..18463+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2789.7618.1 ID=mRNA_H-paniculata_contig2789.7618.1|Name=mRNA_H-paniculata_contig2789.7618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=975bp|location=Sequence derived from alignment at H-paniculata_contig2789:17489..18463+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2789:17489..18463+ >mRNA_H-paniculata_contig2789.7618.1 ID=mRNA_H-paniculata_contig2789.7618.1|Name=mRNA_H-paniculata_contig2789.7618.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at H-paniculata_contig2789:17489..18463+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |