mRNA_H-paniculata_contig27872.7614.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27872.7614.1
Unique NamemRNA_H-paniculata_contig27872.7614.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27872.7614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27872contigH-paniculata_contig27872:19..1629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size223
Cds size174
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27872.7614.1prot_H-paniculata_contig27872.7614.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27872 19..1580 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929842.6253765-CDS-H-paniculata_contig27872:18..1541622929842.6253765-CDS-H-paniculata_contig27872:18..154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27872 19..154 +
1691481035.3843684-CDS-H-paniculata_contig27872:18..1541691481035.3843684-CDS-H-paniculata_contig27872:18..154Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27872 19..154 +
1622929842.6386654-CDS-H-paniculata_contig27872:1542..15801622929842.6386654-CDS-H-paniculata_contig27872:1542..1580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27872 1543..1580 +
1691481035.3939085-CDS-H-paniculata_contig27872:1542..15801691481035.3939085-CDS-H-paniculata_contig27872:1542..1580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27872 1543..1580 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929842.6503441-UTR-H-paniculata_contig27872:1580..16291622929842.6503441-UTR-H-paniculata_contig27872:1580..1629Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27872 1581..1629 +
1691481035.4094296-UTR-H-paniculata_contig27872:1580..16291691481035.4094296-UTR-H-paniculata_contig27872:1580..1629Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27872 1581..1629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27872.7614.1

>prot_H-paniculata_contig27872.7614.1 ID=prot_H-paniculata_contig27872.7614.1|Name=mRNA_H-paniculata_contig27872.7614.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
DAPERHRRCDGFYQRGRGGYRRPWEAVRPSCARMVTSTGVQVVFFDATLR
LECVHGC*
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mRNA from alignment at H-paniculata_contig27872:19..1629+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27872.7614.1 ID=mRNA_H-paniculata_contig27872.7614.1|Name=mRNA_H-paniculata_contig27872.7614.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1611bp|location=Sequence derived from alignment at H-paniculata_contig27872:19..1629+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGCACCCGAGCGACATCGGAGATGTGATGGCTTCTATCAGCGGGGCAG
AGGAGGCTACCGCAGACCATGGGAGGCAGTTCGCCCTTCATGTGCGAGGA
TGGTGACCTCTACCGGCGTGCAAGTCGTGTTTTTTGGTGAGCTGTCAGTG
CAATGCTGGATTGCACTACGGCAAAAGAATCATACGATTTTTAAAGTTTT
CTTTCTGTACCCAGATTTCAAAAGTTTCAATTTCCTGTGTTTTTCGAGTT
CGATCCTATGCTAGAAACGTTGAGGGACTTGGCCATGTGGCTGGGATAAT
CAATCGCGGGATAAGCTGTGAGTCACATACAAGGCGAATGTGTGTAAGGT
CAAAGGTACTTGAGATAGGTCTTTGAAGAGTTGATAATTGGGAGATGTCT
GTGGAGGCCAGCTGTAGGTCGACGATTGCAGCATGGGATGTTGTTTTTAC
TTCGTCAGCTGTCCACGCATTACTTTGATTGTCCACATACATTCGGGGTT
CTGACATCACCTGCAATTACATTGCCAGAATATTAATGAAGACGTACCGA
TAGGCTTACGAGTAAGCAAGTAATAACATTCCGATTTGACCCCAGCTGAC
ATGTACAACAGACGGCACTGTGCACTGTTTGTAGGTGTGTAATGTAGACA
ACTATGATCTTCTGGTGCAAACCTCCTCGTATTGGTACCCAGTTTGTGGT
TCAAGCGTGCATGTGCATGAGTTGTGTGACGGACAACTGTAGTACGTGTA
ATTATTTTGAGGAGCTCTGAAATCATCTCCGATATTTTTATGTTGGTCCT
AGTGCGGGAGCATGACGACACGATGTGGCAATACGGAAAATCATTTTGCA
ATTGGTCGTTGAGCAAGGTACGCATAACATAATGTTTCGATCACGAGCGA
GCCGATTGTTGACTGTTGACTGACTGTCGACTAGAACTGCCTTTACTCGA
ATCCGAGCACATTTCAAATACCACTCTGTTGAAATTCTTGTGTTGGTTGG
ATTGGGCTTGCTTTAGTCTTGGAAAGGTGGATTAGCTACCTGCCTATTTG
AGCTTGTGTCGCAAGGCCGGATAAAACAAGAATGAACTGTCGTCTTGTTG
TGAAATTTTGTTGGTGTTGGAGAGGGCGCTTTCTGACTTTCAACCATTAC
CATCATGATTTAGGCAACTGGTCAGTGAACAGGTGTAAAACTGGACACTT
GGAATTGTTAGAATGCTTGCTTAAGTAAGGTACGGTAGGTGTGTGATGGT
GAAAGGCTTTCTGTGAAAAGATTTTCACGAGTTGAGTGACCCTGAAGTAT
TTTTTGGTTTTTCAGTTTCGGTTATTATTCTTTGGAGTTACTTGTGCATG
AAGCCATGGATTCAGTATGATTCGCATAATTGTGGGATGAGCTAATTTAC
ATGCTTTACAGTGACGCATGTACTGACCCATTCTATAAATTCCCTTTACC
GTTTACACCCCCGTCGAGCCTTGGTGCGAGGCTTCTATTGTCCCCAATTA
TCTCCAACTGTTCGTTTACCCTAGATGCAACTCTGAGATTGGAATGTGTG
CATGGTTGTTGAACGCGCTGTGGATGGGGTGACGGTGACCGATGATGAGA
CTCGAGTCCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig27872:19..1629+

>mRNA_H-paniculata_contig27872.7614.1 ID=mRNA_H-paniculata_contig27872.7614.1|Name=mRNA_H-paniculata_contig27872.7614.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig27872:19..1629+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGCACCCGAGCGACATCGGAGATGTGATGGCTTCTATCAGCGGGGCAG
AGGAGGCTACCGCAGACCATGGGAGGCAGTTCGCCCTTCATGTGCGAGGA
TGGTGACCTCTACCGGCGTGCAAGTCGTGTTTTTTGGACGCACCCGAGCG
ACATCGGAGATGTGATGGCTTCTATCAGCGGGGCAGAGGAGGCTACCGCA
GACCATGGGAGGCAGTTCGCCCTTCATGTGCGAGGATGGTGACCTCTACC
GGCGTGCAAGTCGTGTTTTTTGATGCAACTCTGAGATTGGAATGTGTGCA
TGGTTGTTGAATGCAACTCTGAGATTGGAATGTGTGCATGGTTGTTGA
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