prot_H-paniculata_contig27855.7611.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig27855.7611.1
Unique Nameprot_H-paniculata_contig27855.7611.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length75
Homology
BLAST of mRNA_H-paniculata_contig27855.7611.1 vs. uniprot
Match: D7FRP7_ECTSI (General transcription factor IIH subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRP7_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 2.800e-38
Identity = 68/75 (90.67%), Postives = 75/75 (100.00%), Query Frame = 0
Query:    1 MIRYLYLAIDLSKSMSEGDLRPSRLAVTLRIVQDFISSYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL 75
            MIRYLYLAIDLSK+M++GD+RPSRLAVTLRIVQDF+++YFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL
Sbjct:   62 MIRYLYLAIDLSKTMADGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL 136          
BLAST of mRNA_H-paniculata_contig27855.7611.1 vs. uniprot
Match: A0A835ZF22_9STRA (General transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF22_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.260e-29
Identity = 52/75 (69.33%), Postives = 68/75 (90.67%), Query Frame = 0
Query:    1 MIRYLYLAIDLSKSMSEGDLRPSRLAVTLRIVQDFISSYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL 75
            MIRY++L IDLSK MSE D+RP+RLAVT ++V +F+  +FDQNPLSQLGI++TR+GRAE++T+LSGNPKAH+EAL
Sbjct:   73 MIRYVFLCIDLSKGMSETDMRPNRLAVTTKVVAEFVRGFFDQNPLSQLGIIITRDGRAERVTDLSGNPKAHIEAL 147          
BLAST of mRNA_H-paniculata_contig27855.7611.1 vs. uniprot
Match: UPI000A2A4DF7 (general transcription factor IIH subunit 2 isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A4DF7)

HSP 1 Score: 106 bits (264), Expect = 1.330e-25
Identity = 46/75 (61.33%), Postives = 65/75 (86.67%), Query Frame = 0
Query:    1 MIRYLYLAIDLSKSMSEGDLRPSRLAVTLRIVQDFISSYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL 75
            M+R+L+L ID+SKSM E DL+P+R+A T +++++FI+ YFDQNP+SQLGIL+T+  RAEK+TELSGNPK H+ A+
Sbjct:   58 MMRHLFLVIDMSKSMEEADLKPTRIACTAKLLENFITEYFDQNPISQLGILITKNKRAEKLTELSGNPKLHINAI 132          
BLAST of mRNA_H-paniculata_contig27855.7611.1 vs. uniprot
Match: A0A6P8J4X2_ACTTE (general transcription factor IIH subunit 2-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8J4X2_ACTTE)

HSP 1 Score: 104 bits (260), Expect = 4.040e-25
Identity = 45/75 (60.00%), Postives = 66/75 (88.00%), Query Frame = 0
Query:    1 MIRYLYLAIDLSKSMSEGDLRPSRLAVTLRIVQDFISSYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL 75
            M+R++YL ID+SK+M E DL+P+RL  T++++++FI+ YFDQNP+SQ+GI++TR  RAEK+TELSGNPK H++AL
Sbjct:   56 MMRHMYLIIDMSKAMEEADLKPTRLNCTVKLLENFITEYFDQNPISQIGIILTRNKRAEKLTELSGNPKLHIKAL 130          
BLAST of mRNA_H-paniculata_contig27855.7611.1 vs. uniprot
Match: A0A7D9IS69_PARCT (General transcription factor IIH subunit 2-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IS69_PARCT)

HSP 1 Score: 99.8 bits (247), Expect = 6.150e-25
Identity = 45/75 (60.00%), Postives = 61/75 (81.33%), Query Frame = 0
Query:    1 MIRYLYLAIDLSKSMSEGDLRPSRLAVTLRIVQDFISSYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL 75
            M+R+LY+ +DLSK+M E DL+PSRL  TL+++++FI  YFDQNP+SQLGI+ T   RAEK++ELSGNP+ H  AL
Sbjct:   59 MMRHLYIILDLSKAMEEADLKPSRLFCTLKLLENFIVEYFDQNPISQLGIISTNNKRAEKLSELSGNPRIHASAL 133          
BLAST of mRNA_H-paniculata_contig27855.7611.1 vs. uniprot
Match: A0A507ESB1_9FUNG (Ssl1 domain-containing protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507ESB1_9FUNG)

HSP 1 Score: 100 bits (249), Expect = 9.110e-25
Identity = 45/75 (60.00%), Postives = 62/75 (82.67%), Query Frame = 0
Query:    1 MIRYLYLAIDLSKSMSEGDLRPSRLAVTLRIVQDFISSYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL 75
            +IR+LYL IDLS++M+E DL+PSR+  T+R+ ++FI  YFDQNPLSQLGI++TR+  AE++TEL+GNP  H  AL
Sbjct:   86 IIRHLYLVIDLSRAMAELDLKPSRIECTMRLAEEFIGEYFDQNPLSQLGIIITRDALAEQLTELTGNPTDHTSAL 160          
BLAST of mRNA_H-paniculata_contig27855.7611.1 vs. uniprot
Match: UPI00077AE96B (general transcription factor IIH subunit 2-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AE96B)

HSP 1 Score: 103 bits (257), Expect = 1.330e-24
Identity = 44/75 (58.67%), Postives = 65/75 (86.67%), Query Frame = 0
Query:    1 MIRYLYLAIDLSKSMSEGDLRPSRLAVTLRIVQDFISSYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL 75
            M+R+L++ +D+S++M E DL+PSRLA ++++++DFIS YFDQNP+SQ+G++VTR  RAEKITELSGNP+ H+  L
Sbjct:   62 MMRHLFIVVDMSRAMEEADLKPSRLACSVKLLEDFISEYFDQNPISQVGLIVTRNKRAEKITELSGNPQLHIGCL 136          
BLAST of mRNA_H-paniculata_contig27855.7611.1 vs. uniprot
Match: A0A433Q0F6_9FUNG (VWFA domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433Q0F6_9FUNG)

HSP 1 Score: 101 bits (251), Expect = 2.580e-24
Identity = 47/75 (62.67%), Postives = 62/75 (82.67%), Query Frame = 0
Query:    1 MIRYLYLAIDLSKSMSEGDLRPSRLAVTLRIVQDFISSYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL 75
            +IR+L+L IDLS++M+E DLRPSRL +TL   + F+  YFDQNP+SQLGI++TR+G AEK+TELSGNP  H+ AL
Sbjct:   81 IIRHLFLVIDLSETMNEKDLRPSRLDLTLSYAEQFVLEYFDQNPISQLGIILTRDGVAEKLTELSGNPMEHVRAL 155          
BLAST of mRNA_H-paniculata_contig27855.7611.1 vs. uniprot
Match: A0A162ZY90_PHYB8 (General transcription and DNA repair factor IIH n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162ZY90_PHYB8)

HSP 1 Score: 102 bits (255), Expect = 3.190e-24
Identity = 48/75 (64.00%), Postives = 63/75 (84.00%), Query Frame = 0
Query:    1 MIRYLYLAIDLSKSMSEGDLRPSRLAVTLRIVQDFISSYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL 75
            +IR+L+L IDLS++M+E DLRPSR+ +TL   Q F+  YFDQNP+SQLGI+VTR+G AEK+TELSGNP  H++AL
Sbjct:   79 IIRHLFLIIDLSEAMNEKDLRPSRVELTLNYAQQFVIEYFDQNPISQLGIIVTRDGIAEKLTELSGNPTDHIKAL 153          
BLAST of mRNA_H-paniculata_contig27855.7611.1 vs. uniprot
Match: UPI001F044248 (general transcription factor IIH subunit 2-like isoform X1 n=2 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F044248)

HSP 1 Score: 102 bits (254), Expect = 3.750e-24
Identity = 46/75 (61.33%), Postives = 62/75 (82.67%), Query Frame = 0
Query:    1 MIRYLYLAIDLSKSMSEGDLRPSRLAVTLRIVQDFISSYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL 75
            M+R+LY+ +DLSK+M E DL+PSR+  T++++Q+FI  YFDQNP+SQLGI+VT   RAEK+TELSGNP+ H  AL
Sbjct:   59 MMRHLYVILDLSKAMEEADLKPSRIVCTIKLLQNFIVEYFDQNPISQLGIIVTFNKRAEKLTELSGNPRLHTSAL 133          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27855.7611.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRP7_ECTSI2.800e-3890.67General transcription factor IIH subunit n=2 Tax=E... [more]
A0A835ZF22_9STRA1.260e-2969.33General transcription factor IIH subunit n=1 Tax=T... [more]
UPI000A2A4DF71.330e-2561.33general transcription factor IIH subunit 2 isoform... [more]
A0A6P8J4X2_ACTTE4.040e-2560.00general transcription factor IIH subunit 2-like n=... [more]
A0A7D9IS69_PARCT6.150e-2560.00General transcription factor IIH subunit 2-like n=... [more]
A0A507ESB1_9FUNG9.110e-2560.00Ssl1 domain-containing protein n=1 Tax=Spizellomyc... [more]
UPI00077AE96B1.330e-2458.67general transcription factor IIH subunit 2-like n=... [more]
A0A433Q0F6_9FUNG2.580e-2462.67VWFA domain-containing protein n=1 Tax=Endogone sp... [more]
A0A162ZY90_PHYB83.190e-2464.00General transcription and DNA repair factor IIH n=... [more]
UPI001F0442483.750e-2461.33general transcription factor IIH subunit 2-like is... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007198Ssl1-likePFAMPF04056Ssl1coord: 9..75
e-value: 5.3E-25
score: 88.4
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410coord: 1..75
e-value: 1.9E-27
score: 98.0
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 4..55
NoneNo IPR availablePANTHERPTHR12695GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2coord: 1..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27855contigH-paniculata_contig27855:905..1618 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27855.7611.1mRNA_H-paniculata_contig27855.7611.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig27855 905..1630 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig27855.7611.1 ID=prot_H-paniculata_contig27855.7611.1|Name=mRNA_H-paniculata_contig27855.7611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
MIRYLYLAIDLSKSMSEGDLRPSRLAVTLRIVQDFISSYFDQNPLSQLGI
LVTREGRAEKITELSGNPKAHMEAL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007198Ssl1-like
IPR036465vWFA_dom_sf