mRNA_H-paniculata_contig27855.7611.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27855.7611.1
Unique NamemRNA_H-paniculata_contig27855.7611.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27855.7611.1 vs. uniprot
Match: D7FRP7_ECTSI (General transcription factor IIH subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRP7_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 3.760e-41
Identity = 72/79 (91.14%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:    1 IKRGMIRYLYLAIDLSKSMSEGDLRPSRLAVTLRIVQDFISSYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL 237
            IKRGMIRYLYLAIDLSK+M++GD+RPSRLAVTLRIVQDF+++YFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL
Sbjct:   58 IKRGMIRYLYLAIDLSKTMADGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL 136
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BLAST of mRNA_H-paniculata_contig27855.7611.1 vs. uniprot
Match: A0A835ZF22_9STRA (General transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF22_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.820e-32
Identity = 56/79 (70.89%), Postives = 72/79 (91.14%), Query Frame = 1 
Query:    1 IKRGMIRYLYLAIDLSKSMSEGDLRPSRLAVTLRIVQDFISSYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL 237
            IKRGMIRY++L IDLSK MSE D+RP+RLAVT ++V +F+  +FDQNPLSQLGI++TR+GRAE++T+LSGNPKAH+EAL
Sbjct:   69 IKRGMIRYVFLCIDLSKGMSETDMRPNRLAVTTKVVAEFVRGFFDQNPLSQLGIIITRDGRAERVTDLSGNPKAHIEAL 147
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BLAST of mRNA_H-paniculata_contig27855.7611.1 vs. uniprot
Match: A0A507ESB1_9FUNG (Ssl1 domain-containing protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507ESB1_9FUNG)

HSP 1 Score: 106 bits (264), Expect = 5.980e-27
Identity = 47/79 (59.49%), Postives = 66/79 (83.54%), Query Frame = 1 
Query:    1 IKRGMIRYLYLAIDLSKSMSEGDLRPSRLAVTLRIVQDFISSYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL 237
            ++RG+IR+LYL IDLS++M+E DL+PSR+  T+R+ ++FI  YFDQNPLSQLGI++TR+  AE++TEL+GNP  H  AL
Sbjct:   82 VQRGIIRHLYLVIDLSRAMAELDLKPSRIECTMRLAEEFIGEYFDQNPLSQLGIIITRDALAEQLTELTGNPTDHTSAL 160
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BLAST of mRNA_H-paniculata_contig27855.7611.1 vs. uniprot
Match: UPI000A2A4DF7 (general transcription factor IIH subunit 2 isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A4DF7)

HSP 1 Score: 109 bits (273), Expect = 7.870e-27
Identity = 47/79 (59.49%), Postives = 68/79 (86.08%), Query Frame = 1 
Query:    1 IKRGMIRYLYLAIDLSKSMSEGDLRPSRLAVTLRIVQDFISSYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL 237
            ++ GM+R+L+L ID+SKSM E DL+P+R+A T +++++FI+ YFDQNP+SQLGIL+T+  RAEK+TELSGNPK H+ A+
Sbjct:   54 VRLGMMRHLFLVIDMSKSMEEADLKPTRIACTAKLLENFITEYFDQNPISQLGILITKNKRAEKLTELSGNPKLHINAI 132
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BLAST of mRNA_H-paniculata_contig27855.7611.1 vs. uniprot
Match: A0A433Q0F6_9FUNG (VWFA domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433Q0F6_9FUNG)

HSP 1 Score: 107 bits (267), Expect = 1.320e-26
Identity = 50/79 (63.29%), Postives = 66/79 (83.54%), Query Frame = 1 
Query:    1 IKRGMIRYLYLAIDLSKSMSEGDLRPSRLAVTLRIVQDFISSYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL 237
            I+RG+IR+L+L IDLS++M+E DLRPSRL +TL   + F+  YFDQNP+SQLGI++TR+G AEK+TELSGNP  H+ AL
Sbjct:   77 IQRGIIRHLFLVIDLSETMNEKDLRPSRLDLTLSYAEQFVLEYFDQNPISQLGIILTRDGVAEKLTELSGNPMEHVRAL 155
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BLAST of mRNA_H-paniculata_contig27855.7611.1 vs. uniprot
Match: A0A162ZY90_PHYB8 (General transcription and DNA repair factor IIH n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A162ZY90_PHYB8)

HSP 1 Score: 108 bits (271), Expect = 1.930e-26
Identity = 51/79 (64.56%), Postives = 67/79 (84.81%), Query Frame = 1 
Query:    1 IKRGMIRYLYLAIDLSKSMSEGDLRPSRLAVTLRIVQDFISSYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL 237
            I+RG+IR+L+L IDLS++M+E DLRPSR+ +TL   Q F+  YFDQNP+SQLGI+VTR+G AEK+TELSGNP  H++AL
Sbjct:   75 IQRGIIRHLFLIIDLSEAMNEKDLRPSRVELTLNYAQQFVIEYFDQNPISQLGIIVTRDGIAEKLTELSGNPTDHIKAL 153
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BLAST of mRNA_H-paniculata_contig27855.7611.1 vs. uniprot
Match: A0A7D9IS69_PARCT (General transcription factor IIH subunit 2-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IS69_PARCT)

HSP 1 Score: 103 bits (257), Expect = 2.220e-26
Identity = 47/79 (59.49%), Postives = 64/79 (81.01%), Query Frame = 1 
Query:    1 IKRGMIRYLYLAIDLSKSMSEGDLRPSRLAVTLRIVQDFISSYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL 237
            I+ GM+R+LY+ +DLSK+M E DL+PSRL  TL+++++FI  YFDQNP+SQLGI+ T   RAEK++ELSGNP+ H  AL
Sbjct:   55 IRLGMMRHLYIILDLSKAMEEADLKPSRLFCTLKLLENFIVEYFDQNPISQLGIISTNNKRAEKLSELSGNPRIHASAL 133
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BLAST of mRNA_H-paniculata_contig27855.7611.1 vs. uniprot
Match: A0A6P8J4X2_ACTTE (general transcription factor IIH subunit 2-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8J4X2_ACTTE)

HSP 1 Score: 108 bits (269), Expect = 2.370e-26
Identity = 46/79 (58.23%), Postives = 69/79 (87.34%), Query Frame = 1 
Query:    1 IKRGMIRYLYLAIDLSKSMSEGDLRPSRLAVTLRIVQDFISSYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL 237
            ++ GM+R++YL ID+SK+M E DL+P+RL  T++++++FI+ YFDQNP+SQ+GI++TR  RAEK+TELSGNPK H++AL
Sbjct:   52 VRLGMMRHMYLIIDMSKAMEEADLKPTRLNCTVKLLENFITEYFDQNPISQIGIILTRNKRAEKLTELSGNPKLHIKAL 130
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BLAST of mRNA_H-paniculata_contig27855.7611.1 vs. uniprot
Match: A0A0B7N1V3_9FUNG (General transcription and DNA repair factor IIH n=3 Tax=Mucoraceae TaxID=34489 RepID=A0A0B7N1V3_9FUNG)

HSP 1 Score: 108 bits (270), Expect = 2.660e-26
Identity = 50/79 (63.29%), Postives = 67/79 (84.81%), Query Frame = 1 
Query:    1 IKRGMIRYLYLAIDLSKSMSEGDLRPSRLAVTLRIVQDFISSYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL 237
            I+RG+IR+L+L IDLS++M+E DLRPSR+ +TL   Q F+  YFDQNP+SQLGI++TR+G AEK+TELSGNP  H++AL
Sbjct:   75 IQRGIIRHLFLVIDLSEAMNEKDLRPSRVELTLTYAQQFVIEYFDQNPISQLGIIITRDGIAEKLTELSGNPTDHIKAL 153
[Close]
BLAST of mRNA_H-paniculata_contig27855.7611.1 vs. uniprot
Match: A0A4P9XPD2_9FUNG (General transcription and DNA repair factor IIH n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XPD2_9FUNG)

HSP 1 Score: 108 bits (270), Expect = 2.720e-26
Identity = 50/79 (63.29%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:    1 IKRGMIRYLYLAIDLSKSMSEGDLRPSRLAVTLRIVQDFISSYFDQNPLSQLGILVTREGRAEKITELSGNPKAHMEAL 237
            I+RG+IR+L+L +DLS +M E DLRPSRL +TL + + FI  YFDQNP+SQLGI++TR+G AEK+TELSGNP  H+ AL
Sbjct:   75 IQRGIIRFLFLVLDLSNAMLEKDLRPSRLDLTLTLAESFIGEYFDQNPISQLGIIITRDGVAEKLTELSGNPMEHIRAL 153
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27855.7611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRP7_ECTSI3.760e-4191.14General transcription factor IIH subunit n=2 Tax=E... [more]
A0A835ZF22_9STRA1.820e-3270.89General transcription factor IIH subunit n=1 Tax=T... [more]
A0A507ESB1_9FUNG5.980e-2759.49Ssl1 domain-containing protein n=1 Tax=Spizellomyc... [more]
UPI000A2A4DF77.870e-2759.49general transcription factor IIH subunit 2 isoform... [more]
A0A433Q0F6_9FUNG1.320e-2663.29VWFA domain-containing protein n=1 Tax=Endogone sp... [more]
A0A162ZY90_PHYB81.930e-2664.56General transcription and DNA repair factor IIH n=... [more]
A0A7D9IS69_PARCT2.220e-2659.49General transcription factor IIH subunit 2-like n=... [more]
A0A6P8J4X2_ACTTE2.370e-2658.23general transcription factor IIH subunit 2-like n=... [more]
A0A0B7N1V3_9FUNG2.660e-2663.29General transcription and DNA repair factor IIH n=... [more]
A0A4P9XPD2_9FUNG2.720e-2663.29General transcription and DNA repair factor IIH n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27855contigH-paniculata_contig27855:905..1630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue3.9e-31
Seed eggNOG ortholog2880.D7FRP7
Preferred nameGTF2H2
KEGG rclassRC00002,RC00078
KEGG koko:K00889,ko:K01177,ko:K03142,ko:K14766
KEGG ReactionR02112,R03469,R11262
KEGG Pathwayko00500,ko00562,ko01100,ko03022,ko03420,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05203,ko05231,map00500,map00562,map01100,map03022,map03420,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05203,map05231
KEGG ModuleM00130,M00290
Hectar predicted targeting categoryother localisation
GOsGO:0000109,GO:0000112,GO:0000428,GO:0000438,GO:0000439,GO:0000988,GO:0000990,GO:0000991,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0002029,GO:0002031,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006412,GO:0006464,GO:0006468,GO:0006518,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006898,GO:0006950,GO:0006974,GO:0008135,GO:0008150,GO:0008152,GO:0008277,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009452,GO:0009628,GO:0009889,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010646,GO:0010648,GO:0016043,GO:0016070,GO:0016071,GO:0016192,GO:0016310,GO:0016567,GO:0016591,GO:0016604,GO:0016607,GO:0016740,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019787,GO:0022401,GO:0022607,GO:0023051,GO:0023057,GO:0023058,GO:0030880,GO:0031323,GO:0031326,GO:0031334,GO:0031623,GO:0031974,GO:0031981,GO:0032446,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0033683,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0036260,GO:0043043,GO:0043112,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045744,GO:0046483,GO:0047485,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051716,GO:0055029,GO:0060255,GO:0061630,GO:0061659,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070647,GO:0070816,GO:0070911,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0097659,GO:0098657,GO:0140096,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1990234,GO:1990391,GO:2000112,GO:2001141
EggNOG free text desc.nucleotide-excision repair
EggNOG OGsCOG5151@1,KOG2807@2759
EC2.7.1.68,3.2.1.2
COG Functional cat.KL
CAZyGH14
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03021,ko03400,ko04131
Exons2
Model size237
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27855.7611.1prot_H-paniculata_contig27855.7611.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27855 905..1618 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929842.1526232-CDS-H-paniculata_contig27855:904..9681622929842.1526232-CDS-H-paniculata_contig27855:904..968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27855 905..968 -
1691481035.1714518-CDS-H-paniculata_contig27855:904..9681691481035.1714518-CDS-H-paniculata_contig27855:904..968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27855 905..968 -
1622929842.1674175-CDS-H-paniculata_contig27855:1457..16181622929842.1674175-CDS-H-paniculata_contig27855:1457..1618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27855 1458..1618 -
1691481035.1819346-CDS-H-paniculata_contig27855:1457..16181691481035.1819346-CDS-H-paniculata_contig27855:1457..1618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27855 1458..1618 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929842.1830947-UTR-H-paniculata_contig27855:1618..16301622929842.1830947-UTR-H-paniculata_contig27855:1618..1630Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27855 1619..1630 -
1691481035.189573-UTR-H-paniculata_contig27855:1618..16301691481035.189573-UTR-H-paniculata_contig27855:1618..1630Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27855 1619..1630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27855.7611.1

>prot_H-paniculata_contig27855.7611.1 ID=prot_H-paniculata_contig27855.7611.1|Name=mRNA_H-paniculata_contig27855.7611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
MIRYLYLAIDLSKSMSEGDLRPSRLAVTLRIVQDFISSYFDQNPLSQLGI
LVTREGRAEKITELSGNPKAHMEAL
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mRNA from alignment at H-paniculata_contig27855:905..1630-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27855.7611.1 ID=mRNA_H-paniculata_contig27855.7611.1|Name=mRNA_H-paniculata_contig27855.7611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=726bp|location=Sequence derived from alignment at H-paniculata_contig27855:905..1630- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAAAAGGGGCATGATCCGTTACCTGTACCTAGCGATAGACCTGTCGAA
GTCCATGTCGGAGGGAGATCTCAGGCCCAGCCGACTGGCGGTGACCTTAA
GGATCGTGCAGGATTTCATTTCCAGCTACTTCGACCAGAATCCACTGAGC
CAGCTGGGGATACTGGTCACACGGTGAGCCTTTTCGGCACGGCGTGGCTT
GCCAAGGGGTCCCCCCTCACTCCACCTCTCTTAGCTAGGCCTCTCTTCCT
TGACCCCTTGAGCACCGGAGAGGGGCTGTTTTCAGAACACCCAAAAAAGG
CCCATATTAACAACAGAATGTCGAGCGCTGCAGCACTCGTTATGGGCAAA
ACCATGCCCGGTCCCTGTCTGTCTATGCTGTGCGTACTGTACTCTCTGCA
CAGGATTGTCTGCCTGAACAAACTTGGCTCACTATTCCAGTAGTCATCGT
TCCTGTAAATTGGGGCATGCTGTAACGTTTTTACTAAATAGCTTTTTCGA
GATGCATGCAGCCAAGGCGAAAATTCTTTTCAACATATTACTCACTTGAG
GAAGATACGCCTAGTCTGTTCGCGCTTTTTATTTTTTTAATTTTTTATAT
GCCTCTTAGTGCTCTCCAATCGTTTCGTTTTGCATGTTGTTCTATATGTG
TTCTTGTTTTAGGGAAGGACGGGCCGAAAAGATCACAGAACTCTCTGGGA
ACCCCAAGGCACATATGGAGGCCCTA
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Coding sequence (CDS) from alignment at H-paniculata_contig27855:905..1630-

>mRNA_H-paniculata_contig27855.7611.1 ID=mRNA_H-paniculata_contig27855.7611.1|Name=mRNA_H-paniculata_contig27855.7611.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig27855:905..1630- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCCGTTACCTGTACCTAGCGATAGACCTGTCGAAGTCCATGTCGGA
GGGAGATCTCAGGCCCAGCCGACTGGCGGTGACCTTAAGGATCGTGCAGG
ATTTCATTTCCAGCTACTTCGACCAGAATCCACTGAGCCAGCTGGGGATA
CTGGTCACACGATGATCCGTTACCTGTACCTAGCGATAGACCTGTCGAAG
TCCATGTCGGAGGGAGATCTCAGGCCCAGCCGACTGGCGGTGACCTTAAG
GATCGTGCAGGATTTCATTTCCAGCTACTTCGACCAGAATCCACTGAGCC
AGCTGGGGATACTGGTCACACGGGAAGGACGGGCCGAAAAGATCACAGAA
CTCTCTGGGAACCCCAAGGCACATATGGAGGCCCTAGGAAGGACGGGCCG
AAAAGATCACAGAACTCTCTGGGAACCCCAAGGCACATATGGAGGCCCTA
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