mRNA_H-paniculata_contig2785.7610.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2785.7610.1
Unique NamemRNA_H-paniculata_contig2785.7610.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2785.7610.1 vs. uniprot
Match: D8LMQ7_ECTSI (PF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMQ7_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 5.920e-15
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 MGAKKKGGXXXXXXXXXXXXXXXXXXXYDNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLER 183
            MGAKKKGGXXXXXXXXXXXXXXXXXXXYDNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLER
Sbjct:    1 MGAKKKGGXXXXXXXXXXXXXXXXXXXYDNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLER 61
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BLAST of mRNA_H-paniculata_contig2785.7610.1 vs. uniprot
Match: A0A835YLL1_9STRA (Growth-arrest-specific micro-tubule binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLL1_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.020e-11
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:   82 YDNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLER 183
            YDNMDLEML EVVPMLKQQLEKSMLDRNYVQLER
Sbjct:   27 YDNMDLEMLHEVVPMLKQQLEKSMLDRNYVQLER 60
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BLAST of mRNA_H-paniculata_contig2785.7610.1 vs. uniprot
Match: A0A7S3HKZ6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HKZ6_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.800e-10
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:   82 YDNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLERVS 189
            YD MDLEML+EVVPML+QQLEKSMLDRNYVQLER S
Sbjct:   22 YDTMDLEMLREVVPMLRQQLEKSMLDRNYVQLERDS 57
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BLAST of mRNA_H-paniculata_contig2785.7610.1 vs. uniprot
Match: A0A6V1SRB9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SRB9_HETAK)

HSP 1 Score: 61.6 bits (148), Expect = 1.610e-9
Identity = 29/37 (78.38%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:   82 YDNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLERVST 192
            Y+NM+L+ML+EVVPML+QQLEK+MLDRNYVQLER +T
Sbjct:   29 YNNMELDMLKEVVPMLRQQLEKAMLDRNYVQLERDTT 65
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BLAST of mRNA_H-paniculata_contig2785.7610.1 vs. uniprot
Match: F0XWV6_AURAN (GAS domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWV6_AURAN)

HSP 1 Score: 60.5 bits (145), Expect = 4.110e-9
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:   82 YDNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLER 183
            YD+MDLEMLQEVVPMLKQQL K  LDRNYVQLER
Sbjct:   27 YDSMDLEMLQEVVPMLKQQLAKCTLDRNYVQLER 60
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BLAST of mRNA_H-paniculata_contig2785.7610.1 vs. uniprot
Match: A0A662YBF0_9STRA (HPt domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YBF0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.030e-8
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    1 MGAKKKGGXXXXXXXXXXXXXXXXXXXYDNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLER 183
            MG KKKGG XXXXXXXXXXXXXX    YD MD+ ML+EV+ MLKQQL+K+ +DRNYVQ ER
Sbjct:    1 MGPKKKGGKXXXXXXXXXXXXXXEPSEYDTMDVAMLKEVIQMLKQQLDKAQVDRNYVQHER 61
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BLAST of mRNA_H-paniculata_contig2785.7610.1 vs. uniprot
Match: A0A2P4XJL0_9STRA (Sporangia Induced Dynein Regulatory Complex Protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XJL0_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 8.910e-8
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   82 YDNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLERVS 189
            YD MD+ ML+EV+ ML+QQLEK+ +DRNYVQ ERVS
Sbjct:   27 YDTMDVPMLKEVIQMLRQQLEKAQVDRNYVQHERVS 62
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BLAST of mRNA_H-paniculata_contig2785.7610.1 vs. uniprot
Match: A0A7S2C9W3_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C9W3_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 6.130e-7
Identity = 25/33 (75.76%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:   85 DNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLER 183
            D MDL+ML+EVVPML+QQ+EK+ LDRNY+QLER
Sbjct:   24 DTMDLDMLREVVPMLRQQMEKANLDRNYLQLER 56
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BLAST of mRNA_H-paniculata_contig2785.7610.1 vs. uniprot
Match: A0A8J2SEB4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEB4_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 8.380e-7
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:   82 YDNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLER 183
            Y+ MDLEML+EVVP+LKQ L K  LDRNYVQLER
Sbjct:   21 YETMDLEMLREVVPLLKQTLAKKSLDRNYVQLER 54
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BLAST of mRNA_H-paniculata_contig2785.7610.1 vs. uniprot
Match: A0A5D6XML6_9STRA (GAS domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XML6_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.150e-6
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 1 
Query:    1 MGAKKKGGXXXXXXXXXXXXXXXXXXXYDNMDLEMLQEVVPMLKQQLEKSMLDRNYVQLER 183
            MG KKKG XXXXXXXXXXXXXXX    YD MD+ ML+EV+ ML+QQLEK+ +DRNYVQ ER
Sbjct:    1 MGPKKKGXXXXXXXXXXXXXXXXEPSEYDTMDVPMLREVIQMLRQQLEKAQVDRNYVQHER 61
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2785.7610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LMQ7_ECTSI5.920e-15100.00PF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMQ7_ECT... [more]
A0A835YLL1_9STRA2.020e-1197.06Growth-arrest-specific micro-tubule binding-domain... [more]
A0A7S3HKZ6_9STRA1.800e-1088.89Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6V1SRB9_HETAK1.610e-978.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0XWV6_AURAN4.110e-988.24GAS domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A662YBF0_9STRA1.030e-872.13HPt domain-containing protein (Fragment) n=1 Tax=N... [more]
A0A2P4XJL0_9STRA8.910e-869.44Sporangia Induced Dynein Regulatory Complex Protei... [more]
A0A7S2C9W3_9STRA6.130e-775.76Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A8J2SEB4_9STRA8.380e-776.47Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A5D6XML6_9STRA1.150e-672.13GAS domain-containing protein n=1 Tax=Pythium bras... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2785contigH-paniculata_contig2785:12912..13574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue2.7e-12
Seed eggNOG ortholog2880.D8LMQ7
Preferred nameGAS8
KEGG koko:K14474,ko:K19942
KEGG Pathwayko05143,map05143
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0003351,GO:0003355,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005815,GO:0005856,GO:0005874,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0008285,GO:0008589,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0012505,GO:0015630,GO:0015631,GO:0016043,GO:0017016,GO:0017137,GO:0019899,GO:0022607,GO:0023051,GO:0023056,GO:0030030,GO:0030031,GO:0030154,GO:0030317,GO:0031267,GO:0031514,GO:0032474,GO:0032475,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032880,GO:0033036,GO:0034613,GO:0034622,GO:0035082,GO:0035889,GO:0036064,GO:0036126,GO:0040011,GO:0042127,GO:0042471,GO:0042472,GO:0042692,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043393,GO:0043583,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045880,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048562,GO:0048568,GO:0048583,GO:0048584,GO:0048598,GO:0048646,GO:0048731,GO:0048839,GO:0048840,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0051020,GO:0051098,GO:0051179,GO:0051641,GO:0051674,GO:0055001,GO:0060271,GO:0060285,GO:0060294,GO:0060322,GO:0060341,GO:0061061,GO:0065003,GO:0065007,GO:0065009,GO:0070286,GO:0070727,GO:0070925,GO:0071840,GO:0090596,GO:0097014,GO:0097223,GO:0097722,GO:0097729,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1903564,GO:1903566,GO:1903827,GO:1903829,GO:1904526
EggNOG free text desc.positive regulation of protein localization to cilium
EggNOG OGs2BXFH@1,2QQDA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons2
Model size195
Cds size195
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929842.0962274-CDS-H-paniculata_contig2785:12911..129901622929842.0962274-CDS-H-paniculata_contig2785:12911..12990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2785 12912..12990 +
1691481035.151579-CDS-H-paniculata_contig2785:12911..129901691481035.151579-CDS-H-paniculata_contig2785:12911..12990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2785 12912..12990 +
1622929842.1072383-CDS-H-paniculata_contig2785:13458..135741622929842.1072383-CDS-H-paniculata_contig2785:13458..13574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2785 13459..13574 +
1691481035.160961-CDS-H-paniculata_contig2785:13458..135741691481035.160961-CDS-H-paniculata_contig2785:13458..13574Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2785 13459..13574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2785.7610.1prot_H-paniculata_contig2785.7610.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2785 12912..13574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2785.7610.1

>prot_H-paniculata_contig2785.7610.1 ID=prot_H-paniculata_contig2785.7610.1|Name=mRNA_H-paniculata_contig2785.7610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
MGAKKKGGKKGKGKKGKKEEVKQEETEYDNMDLEMLQEVVPMLKQQLEKS
MLDRNYVQLERVST*
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mRNA from alignment at H-paniculata_contig2785:12912..13574+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2785.7610.1 ID=mRNA_H-paniculata_contig2785.7610.1|Name=mRNA_H-paniculata_contig2785.7610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=663bp|location=Sequence derived from alignment at H-paniculata_contig2785:12912..13574+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGCCAAAAAAAAAGGCGGCAAGAAGGGAAAGGGCAAAAAAGGGAA
GAAGGAAGAAGTTAAACAAGAAGAGACGGGTAAGTTCGTCGTTTTGTTAA
TTCTTCTGTTTCCAAGGTGCTTGAACGACGACGTATTAGTCTCGCCCCAA
TATGCTTGCACTCTACTGTAGAAAAGATGAACCGTCGCTGATACGACTCC
AGGGTTCAAGGATTTGAGGCTTGGTGCCGTTTTTCTGCAGATTTCTTAGG
CATAATTTGACCCCGTTGAGGTATCCCTGCTTTGGAGATCCTGAGTCAGA
GCTAGAGCTACTGTATACCGGGAACTTGGTTGTTTTCCTCTCCGGCCGAG
CTACAGGCATGCCCGTTTCTCATGTAGATATTCGATACATCTCCACCCAC
AGAAAATCGATGTGAGAGCGTACTAGACATATTCGGTGGTTTTCAAGTGT
TCCGAAACTTATGTATCATAGAATACTCAATTTCTAACGAGACAGGTTTT
GGCTTTTACCAGCATATATGTGTGTTGTGGTCGTTCCTTCCCTGCAGAAT
ACGACAACATGGATCTTGAGATGCTGCAAGAGGTTGTACCGATGCTAAAG
CAGCAGCTCGAGAAATCCATGCTCGACCGTAACTACGTCCAGCTCGAGAG
GGTAAGCACTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2785:12912..13574+

>mRNA_H-paniculata_contig2785.7610.1 ID=mRNA_H-paniculata_contig2785.7610.1|Name=mRNA_H-paniculata_contig2785.7610.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig2785:12912..13574+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGCCAAAAAAAAAGGCGGCAAGAAGGGAAAGGGCAAAAAAGGGAA
GAAGGAAGAAGTTAAACAAGAAGAGACGGATGGGGGCCAAAAAAAAAGGC
GGCAAGAAGGGAAAGGGCAAAAAAGGGAAGAAGGAAGAAGTTAAACAAGA
AGAGACGGAATACGACAACATGGATCTTGAGATGCTGCAAGAGGTTGTAC
CGATGCTAAAGCAGCAGCTCGAGAAATCCATGCTCGACCGTAACTACGTC
CAGCTCGAGAGGGTAAGCACTTAGAATACGACAACATGGATCTTGAGATG
CTGCAAGAGGTTGTACCGATGCTAAAGCAGCAGCTCGAGAAATCCATGCT
CGACCGTAACTACGTCCAGCTCGAGAGGGTAAGCACTTAG
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