mRNA_H-paniculata_contig2780.7605.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2780.7605.1
Unique NamemRNA_H-paniculata_contig2780.7605.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2780.7605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2780contigH-paniculata_contig2780:5335..6195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size571
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2780.7605.1prot_H-paniculata_contig2780.7605.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2780 5360..6081 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929841.0539832-UTR-H-paniculata_contig2780:5334..53591622929841.0539832-UTR-H-paniculata_contig2780:5334..5359Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2780 5335..5359 -
1691481034.644645-UTR-H-paniculata_contig2780:5334..53591691481034.644645-UTR-H-paniculata_contig2780:5334..5359Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2780 5335..5359 -
1622929841.1975327-UTR-H-paniculata_contig2780:6081..61951622929841.1975327-UTR-H-paniculata_contig2780:6081..6195Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2780 6082..6195 -
1691481034.667306-UTR-H-paniculata_contig2780:6081..61951691481034.667306-UTR-H-paniculata_contig2780:6081..6195Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2780 6082..6195 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929841.0725775-CDS-H-paniculata_contig2780:5359..54311622929841.0725775-CDS-H-paniculata_contig2780:5359..5431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2780 5360..5431 -
1691481034.652706-CDS-H-paniculata_contig2780:5359..54311691481034.652706-CDS-H-paniculata_contig2780:5359..5431Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2780 5360..5431 -
1622929841.0869558-CDS-H-paniculata_contig2780:5721..60811622929841.0869558-CDS-H-paniculata_contig2780:5721..6081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2780 5722..6081 -
1691481034.6599066-CDS-H-paniculata_contig2780:5721..60811691481034.6599066-CDS-H-paniculata_contig2780:5721..6081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2780 5722..6081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2780.7605.1

>prot_H-paniculata_contig2780.7605.1 ID=prot_H-paniculata_contig2780.7605.1|Name=mRNA_H-paniculata_contig2780.7605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
MVFALNPRYRSLGYIGKLSDTTSVVDDVKLNVWAQLKALVEEVIMAERAA
ASAVRGPGEDDGDRAQKCLKFTTTWGKDLDIMVAGMFDDPVGGSDEDNEE
RVITPEEEAADVINTWRQAKILLQYHGINSGEELGTFWRTYGR*
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mRNA from alignment at H-paniculata_contig2780:5335..6195-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2780.7605.1 ID=mRNA_H-paniculata_contig2780.7605.1|Name=mRNA_H-paniculata_contig2780.7605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=861bp|location=Sequence derived from alignment at H-paniculata_contig2780:5335..6195- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTGTCTGACACTGGAAAGGAAGCGCGTGCCAAAGTTTCTGAGGCTGT
TTTCAAGCGATTTGGGCATAAACGCTGGTGGCGAGGGTACAAGAACGAGA
GCCACCTCTTCGATATGGTGTTCGCCCTCAACCCTCGTTACCGCTCCCTC
GGCTACATCGGCAAGTTGTCGGATACAACGAGTGTCGTAGATGACGTGAA
GCTTAACGTGTGGGCCCAGCTGAAGGCACTAGTTGAGGAGGTGATAATGG
CAGAGCGAGCGGCGGCTTCCGCCGTAAGAGGACCTGGGGAAGATGATGGC
GACCGTGCTCAGAAATGCTTGAAGTTCACAACAACGTGGGGTAAGGACCT
GGATATAATGGTGGCCGGCATGTTCGATGACCCAGTCGGTGGAAGCGACG
AGGATAATGAAGAGAGGGTAATTACACCTGAAGAGGAGGCTGCAGATGTG
ATCAACACTTGGCGACAAGCAAAGGTGAATACTTATTCTTGTTTGGCCAC
GGCTGAAGCTCGTGTTTCGTGTCCATTTTCATTGGAAGCTTGGGGCAAAA
CTACAATATCGCAGCCTTTATGGCTCACTCAATGTGGTACTGTTGAATTA
AGGACTAGCTTCAGTCGCCACGACTTGTGCAATTTCTCCGCTCCCCGATT
AAGGCGACGGTGTACGTTCTCCGGTCTTGATATTCATCCTCATAATGTGT
TCACACAACATCGTGGCGCTCAGCTCATCAACGCATATCTCTTTTCACCT
TTTGTTTTGTACAGATTCTACTTCAGTATCATGGAATCAACAGCGGCGAG
GAACTGGGAACTTTCTGGCGTACGTACGGAAGGTAGAAATTCAGACTCCC
GAGTAAGGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2780:5335..6195-

>mRNA_H-paniculata_contig2780.7605.1 ID=mRNA_H-paniculata_contig2780.7605.1|Name=mRNA_H-paniculata_contig2780.7605.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig2780:5335..6195- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTTCGCCCTCAACCCTCGTTACCGCTCCCTCGGCTACATCGGCAA
GTTGTCGGATACAACGAGTGTCGTAGATGACGTGAAGCTTAACGTGTGGG
CCCAGCTGAAGGCACTAGTTGAGGAGGTGATAATGGCAGAGCGAGCGGCG
GCTTCCGCCGTAAGAGGACCTGGGGAAGATGATGGCGACCGTGCTCAGAA
ATGCTTGAAGTTCACAACAACGTGGGGTAAGGACCTGGATATAATGGTGG
CCGGCATGTTCGATGACCCAGTCGGTGGAAGCGACGAGGATAATGAAGAG
AGGGTAATTACACCTGAAGAGGAGGCTGCAGATGTGATCAACACTTGGCG
ACAAGCAAAGATGGTGTTCGCCCTCAACCCTCGTTACCGCTCCCTCGGCT
ACATCGGCAAGTTGTCGGATACAACGAGTGTCGTAGATGACGTGAAGCTT
AACGTGTGGGCCCAGCTGAAGGCACTAGTTGAGGAGGTGATAATGGCAGA
GCGAGCGGCGGCTTCCGCCGTAAGAGGACCTGGGGAAGATGATGGCGACC
GTGCTCAGAAATGCTTGAAGTTCACAACAACGTGGGGTAAGGACCTGGAT
ATAATGGTGGCCGGCATGTTCGATGACCCAGTCGGTGGAAGCGACGAGGA
TAATGAAGAGAGGGTAATTACACCTGAAGAGGAGGCTGCAGATGTGATCA
ACACTTGGCGACAAGCAAAGATTCTACTTCAGTATCATGGAATCAACAGC
GGCGAGGAACTGGGAACTTTCTGGCGTACGTACGGAAGGTAGATTCTACT
TCAGTATCATGGAATCAACAGCGGCGAGGAACTGGGAACTTTCTGGCGTA
CGTACGGAAGGTAG
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