mRNA_H-paniculata_contig278.7600.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig278.7600.1
Unique NamemRNA_H-paniculata_contig278.7600.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig278.7600.1 vs. uniprot
Match: A0A6H5K1Q5_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Q5_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 9.440e-20
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 TVLAYGQTGSGKTWTVGNTYTGDGAAEDVGIIPRAAVDLFKKLDELRVDGVQASVRASFLE 183
            T+LAYGQTGSGKT TVGN YT +G+ ED GIIPRA  DLFK+++ELR +GV+ASV ASFLE
Sbjct:  107 TILAYGQTGSGKTHTVGNAYTVNGSPEDAGIIPRAVTDLFKRIEELRAEGVKASVHASFLE 167
[Close]
BLAST of mRNA_H-paniculata_contig278.7600.1 vs. uniprot
Match: D8LMX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMX1_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 9.500e-20
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 TVLAYGQTGSGKTWTVGNTYTGDGAAEDVGIIPRAAVDLFKKLDELRVDGVQASVRASFLE 183
            T+LAYGQTGSGKT TVGN YT +G+ ED GIIPRA  DLFK+++ELR +GV+ASV ASFLE
Sbjct:  107 TILAYGQTGSGKTHTVGNAYTVNGSPEDAGIIPRAVTDLFKRIEELRAEGVKASVHASFLE 167
[Close]
BLAST of mRNA_H-paniculata_contig278.7600.1 vs. uniprot
Match: A0A654HG74_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HG74_9CEST)

HSP 1 Score: 60.8 bits (146), Expect = 2.580e-9
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    1 TVLAYGQTGSGKTWTVGNTYTGDGAA--EDVGIIPRAAVDLFKKLDELRVDGVQASVRASFLE 183
            TVLAYGQTGSGKT+T+G  Y  +G       GIIPRA +DLFK+++ +  + V+A+V A F+E
Sbjct:  368 TVLAYGQTGSGKTYTMGTAYEFEGVELPPSAGIIPRAFMDLFKRIESM--EDVEANVEAQFVE 428
[Close]
BLAST of mRNA_H-paniculata_contig278.7600.1 vs. uniprot
Match: B0XG36_CULQU (Chromosome-associated kinesin KIF4A n=10 Tax=Culex pipiens complex TaxID=518105 RepID=B0XG36_CULQU)

HSP 1 Score: 60.8 bits (146), Expect = 2.590e-9
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    1 TVLAYGQTGSGKTWTVGNTYTGDGAAEDVGIIPRAAVDLFKKLDELRVDGVQASVRASFLE 183
            T+LAYGQTGSGKT+T+G  Y G      +G+IPRA +D+F++++E R +  +  V  SF+E
Sbjct:   84 TILAYGQTGSGKTFTMGTNYDGSEDLGGMGVIPRAIIDIFERIEETRGES-ETKVACSFME 143
[Close]
BLAST of mRNA_H-paniculata_contig278.7600.1 vs. uniprot
Match: A0A182FEV7_ANOAL (Kinesin motor domain-containing protein n=1 Tax=Anopheles albimanus TaxID=7167 RepID=A0A182FEV7_ANOAL)

HSP 1 Score: 60.8 bits (146), Expect = 2.590e-9
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 TVLAYGQTGSGKTWTVGNTYTGDGAAEDVGIIPRAAVDLFKKLDELRVDGVQASVRASFLE 183
            T+LAYGQTGSGKT+T+G  ++GD   E  G+IPRA VD+F+K++E   DG   S   SF+E
Sbjct:   86 TILAYGQTGSGKTYTMGTDFSGD-MVESAGVIPRAIVDIFRKVEE--TDG-SISTSCSFVE 142
[Close]
BLAST of mRNA_H-paniculata_contig278.7600.1 vs. uniprot
Match: W5J640_ANODA (Chromosome-associated kinesin KIF4A (Chromokinesin) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=W5J640_ANODA)

HSP 1 Score: 60.1 bits (144), Expect = 4.840e-9
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 TVLAYGQTGSGKTWTVGNTYTGDGAAEDVGIIPRAAVDLFKKLDELRVDGVQASVRASFLE 183
            T+LAYGQTGSGKT+T+G  ++GD   E+ G+IPRA +D+F+K++E   DG   S   SF+E
Sbjct:   93 TILAYGQTGSGKTYTMGTDFSGD-MVENAGVIPRAILDIFRKVEE--TDG-SISTSCSFVE 149
[Close]
BLAST of mRNA_H-paniculata_contig278.7600.1 vs. uniprot
Match: A0A084VCB8_ANOSI (Kinesin-like protein n=1 Tax=Anopheles sinensis TaxID=74873 RepID=A0A084VCB8_ANOSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.660e-8
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:    4 VLAYGQTGSGKTWTVGNTYTGDGAAEDVGIIPRAAVDLFK----KLDELRVDGVQASVRASFLE 183
            +LAYGQTGSGKT+T+G ++TG      VGI+PRA +D+F     K  +   DG +  V  SF+E
Sbjct:   88 ILAYGQTGSGKTYTIGTSFTGSRLTGQVGILPRALLDIFSIVNAKKGKAAADGTRYRVCCSFME 151
[Close]
BLAST of mRNA_H-paniculata_contig278.7600.1 vs. uniprot
Match: UPI001CFC0EE3 (kinesin-like protein KIF7 isoform X1 n=2 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFC0EE3)

HSP 1 Score: 57.4 bits (137), Expect = 4.330e-8
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    1 TVLAYGQTGSGKTWTVGNTYTGDGAAEDVGIIPRAAVDLFKKLDELRVDGVQASVRASFLE 183
            TV AYGQT SGKT+T+G T     + E+ GI+PRAA ++FK +DE   D +  ++R S+LE
Sbjct:   85 TVFAYGQTSSGKTYTIGETNISSFSDEEQGILPRAAAEIFKTIDEN--DLIDYTLRVSYLE 143
[Close]
BLAST of mRNA_H-paniculata_contig278.7600.1 vs. uniprot
Match: A0A6J2QGK9_COTGO (LOW QUALITY PROTEIN: kinesin-like protein KIF27 n=1 Tax=Cottoperca gobio TaxID=56716 RepID=A0A6J2QGK9_COTGO)

HSP 1 Score: 55.5 bits (132), Expect = 2.070e-7
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:    1 TVLAYGQTGSGKTWTVGNTYTGDGAAEDVGIIPRAAVDLFKKLDELRV--DGVQASVRASFLE 183
            TV  YGQTGSGKT+T+G    G    E+ GII R A D+F  L+E R   DGV+A+VR S++E
Sbjct:   79 TVFCYGQTGSGKTYTIG----GGNLDEEGGIIDRVAQDVFLLLEEKRKNGDGVEATVRVSYME 137
[Close]
BLAST of mRNA_H-paniculata_contig278.7600.1 vs. uniprot
Match: A0A3B3SXC3_9TELE (Kinesin family member 21A n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3SXC3_9TELE)

HSP 1 Score: 55.5 bits (132), Expect = 2.070e-7
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:    1 TVLAYGQTGSGKTWTVGNTYTGDGAAEDVGIIPRAAVDLFKKLDELRVDGVQAS-------VRASFLE 183
            T+ AYGQTGSGKT+T+G  +    A E++GIIPRA V LFK ++E R   ++         + A FLE
Sbjct:   84 TIFAYGQTGSGKTYTMGTGFDVSIADEELGIIPRAVVHLFKGIEERRQAAIEQGRPVPEFKISAQFLE 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig278.7600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1Q5_9PHAE9.440e-2072.13Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
D8LMX1_ECTSI9.500e-2072.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A654HG74_9CEST2.580e-952.38Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
B0XG36_CULQU2.590e-947.54Chromosome-associated kinesin KIF4A n=10 Tax=Culex... [more]
A0A182FEV7_ANOAL2.590e-954.10Kinesin motor domain-containing protein n=1 Tax=An... [more]
W5J640_ANODA4.840e-952.46Chromosome-associated kinesin KIF4A (Chromokinesin... [more]
A0A084VCB8_ANOSI1.660e-846.88Kinesin-like protein n=1 Tax=Anopheles sinensis Ta... [more]
UPI001CFC0EE34.330e-849.18kinesin-like protein KIF7 isoform X1 n=2 Tax=Proto... [more]
A0A6J2QGK9_COTGO2.070e-752.38LOW QUALITY PROTEIN: kinesin-like protein KIF27 n=... [more]
A0A3B3SXC3_9TELE2.070e-745.59Kinesin family member 21A n=1 Tax=Paramormyrops ki... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig278contigH-paniculata_contig278:9855..12542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue2.2e-16
Seed eggNOG ortholog2880.D8LMX1
KEGG koko:K10395
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0244@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons2
Model size185
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.8371263-CDS-H-paniculata_contig278:9854..99171622929840.8371263-CDS-H-paniculata_contig278:9854..9917Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig278 9855..9917 +
1691481034.5697913-CDS-H-paniculata_contig278:9854..99171691481034.5697913-CDS-H-paniculata_contig278:9854..9917Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig278 9855..9917 +
1622929840.854106-CDS-H-paniculata_contig278:12420..125401622929840.854106-CDS-H-paniculata_contig278:12420..12540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig278 12421..12540 +
1691481034.5831676-CDS-H-paniculata_contig278:12420..125401691481034.5831676-CDS-H-paniculata_contig278:12420..12540Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig278 12421..12540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig278.7600.1prot_H-paniculata_contig278.7600.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig278 9855..12540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig278.7600.1

>prot_H-paniculata_contig278.7600.1 ID=prot_H-paniculata_contig278.7600.1|Name=mRNA_H-paniculata_contig278.7600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
TVLAYGQTGSGKTWTVGNTYTGDGAAEDVGIIPRAAVDLFKKLDELRVDG
VQASVRASFLE
back to top

mRNA from alignment at H-paniculata_contig278:9855..12542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig278.7600.1 ID=mRNA_H-paniculata_contig278.7600.1|Name=mRNA_H-paniculata_contig278.7600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2688bp|location=Sequence derived from alignment at H-paniculata_contig278:9855..12542+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGTTCTGGCGTACGGTCAGACTGGGTCAGGCAAAACGTGGACAGTCGG
CAATACTTACACGGTATGTGAAATATGTGTCTTCACGTGTTTGTGTATAT
ACACCGTCTGTTATGGTATTACTTTGTAAATGCTACAGAAACTGTCTAAA
CGTGTGTCTTGCGTTCATGCTGTCCTGTTCATTGTGGTTGTTCTGCGACC
GGATTTTTATCGTATCTTTTTTCCTTTCTAATTCCAAAGAAAGAACTTTA
TGATTTTTTCATGGCATCTGTCTTGTGTGGACAGTGGTCGTATCAGCACT
GTTATAAACGTGTATTGTCTGTCGTTTTTGTTGTGTGCAAGTGACATAAC
CTCAGTATTAAAGGTCGAACGCCTTGTTCAGCTTCAGGAGAAAATAGCTT
TTTTTTCAAATATCACAGGGTGACGAGCCAGTGAGAAATCTCGTTCGACG
TGTATCGAGAGTACGTCAGTCGCTGTGTAATGTAAAAAAAGTGGAAGACT
TATGTAGTTGAAGATTAAATCAGTTGTTATCGTGCGATGGTTGATGGCTT
CTAATGAAGTGTGCGTTTTCCCTCCGTAGGAGCCCTGGTAATTTCAGCTC
TTATATATGGTTGTTTCGGGACCTCACATGTCTGGTGTCATGTGTGAAGA
GCAGGTGCACCAAACGAGTACCCCAGTTGATCCGGTAGAGGTTGCCTTGA
GGTCGTCGGCAATAATTTGTGTGGTCTTTGACGGCCGACTCTAAATGATA
TGCACTCGAACCTTTCTGGGTAAAGTAGGATGTTGTTTTGTCTTTACTTG
TGTTCCTGATGTGCTGGTCGATAGCGCATGGGCCACCTCCAAGGTAAAGA
TAGAAGTGCCCATACTGAGCATATTATATTTCAAGTTGGTACTTCGAGCC
ATGGTTTTATAAAGGTCAGCTGACATTCAACGGTGATCCATACAAAGAGG
AAAAGTCAAATATCCTATAGGAGCAGGGTGATACAATACCGGGTCCCCAT
CTGGCAACGCGCAGGCTTGACCCCCGGGCGGGTTCGCTCCACGTATGCGT
TATCGGTACACACAAAAGGTAAAGTCATTCCTCGAGTCCAGTGTGACAAT
TGGGCGTGGCTCGCAGGACGGGGTGTGAATCACAATATCCTTACAACGTT
CCGTCCCCTCGCGATTCCATAAGCACGAATGGGTTTGCTCGCAAACGACT
CCAACGGTATCATTCTGAGCGATCCGAAGATCACAAAATCAATACTTATT
GACTTCCCTCTTGTGCTGGGTAGGAGGTTGATCCATAGGGGGTTCTGTCG
TTGCTTCGGACGCATGCAACACTGTACAACGGAATGACACCTCTCCAATG
TGGAGGCTTGCCTCCCCTTGCGCGTTGCATTTTAGATCCAACATTGCCTT
GGCACATTTACGCCGATGCTACAATAAAAAATTGAAGTCTATGTTCCATA
TAGTAAAGTAAATGATGTGGAACCTGTAGTCTTGATTCACAGAATAAATA
ACCGCAGGCAACAAACCGATTTCTTCAAATCGAATTTATCAAGAGGTAAA
ACCATGCAGAGCGCGATTGTGGTGCAAGTCTAGTCGTCGGCCACTCGTCG
GACGAACAAAACACTCGAAGTATTGGCAACAATAGTTCAAAATGTATTCC
CGTGAAGATTCAGCAGGATCACGTTCATGTTATGTGTCCTGGACCATCCA
TGACTTCCCCAATCTTAGTTAAATGGATATTCATGGGGTCAACACTTTAT
TTCGTATGGCAGCACTCTGGAAGTTTTGGATGAACACTTTTGAATATTCG
TCGCGACTGTGCGAAGATATTTATATATTTTACAAAATCTCCTTCATTTT
TCTATTTTTTGCAATTACAAAAGAACAATGATCGCGCCTGTAATTTTCTA
GGGGAGAAACGAAGAAGTTTTCGGGGGTCTAACTAGGACCGAAAAGTTCA
ATTTTTTTTTCGGGAAATTGAACACGAACGCGTCATGAAGTTCTCTTGGC
CCGCCCGCATTATCATTGTTTTCATTTCTTTTGGTGATCCGAGAAAATTA
TGTTGGAAAAGCGAAGAAATAAAAGTGGCACAACTTGACTTCATTTTCGG
GACTCAAAAAAAAATAAAAACGATGACAAGTTATGCCATGTAACGATTAT
TAGTCTTCATTTAAGTCCATCTACAATGCAGACAACGAAGTTCAGTCAAA
TCGACCAAGTTCTCAGGATTCGGCGTTGACTTGATTTTGATGAAGGAAGT
TCTGTCCGGAATCTTTGCGCATACGGTAAAGCTTCTGGATTATGAAAATC
TCAACACCTAAAAGAAAAATAATTTGAGCACACTGGGATTTGTTCGTAAT
TTTCATGATGTCGGAACGAAATATATATATTTATATATATGTATGTATAC
ATATTGCTAGAGCTAGCCCTGTGTGTCTTCAGCATTCTTCACGTTTCAAT
TGATATACATTTTCAGGATCAAAAGCCGGTTGCCCCGTATGGTTGACTGT
AGGTCATGCTTTTTTTAGCGGTCGATCGGTTGTTATGGAGAATGACTTTT
CTTTTTCTCTCGTAAGGGCGATGGCGCGGCTGAGGACGTCGGGATCATCC
CTCGAGCAGCGGTGGATTTATTCAAGAAGTTGGACGAACTTCGAGTCGAT
GGTGTCCAGGCATCCGTACGCGCGTCCTTCTTAGAGGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig278:9855..12542+

>mRNA_H-paniculata_contig278.7600.1 ID=mRNA_H-paniculata_contig278.7600.1|Name=mRNA_H-paniculata_contig278.7600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig278:9855..12542+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGGTTCTGGCGTACGGTCAGACTGGGTCAGGCAAAACGTGGACAGTCGG
CAATACTTACACGACGGTTCTGGCGTACGGTCAGACTGGGTCAGGCAAAA
CGTGGACAGTCGGCAATACTTACACGGGCGATGGCGCGGCTGAGGACGTC
GGGATCATCCCTCGAGCAGCGGTGGATTTATTCAAGAAGTTGGACGAACT
TCGAGTCGATGGTGTCCAGGCATCCGTACGCGCGTCCTTCTTAGAGGGCG
ATGGCGCGGCTGAGGACGTCGGGATCATCCCTCGAGCAGCGGTGGATTTA
TTCAAGAAGTTGGACGAACTTCGAGTCGATGGTGTCCAGGCATCCGTACG
CGCGTCCTTCTTAGAG
back to top