mRNA_H-paniculata_contig278.7602.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig278.7602.1
Unique NamemRNA_H-paniculata_contig278.7602.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig278.7602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig278contigH-paniculata_contig278:22565..24809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size590
Cds size588
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.6190672-CDS-H-paniculata_contig278:22564..227281622929840.6190672-CDS-H-paniculata_contig278:22564..22728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig278 22565..22728 +
1691481034.4798572-CDS-H-paniculata_contig278:22564..227281691481034.4798572-CDS-H-paniculata_contig278:22564..22728Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig278 22565..22728 +
1622929840.631787-CDS-H-paniculata_contig278:24384..248081622929840.631787-CDS-H-paniculata_contig278:24384..24808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig278 24385..24808 +
1691481034.493172-CDS-H-paniculata_contig278:24384..248081691481034.493172-CDS-H-paniculata_contig278:24384..24808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig278 24385..24808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig278.7602.1prot_H-paniculata_contig278.7602.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig278 22565..24808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig278.7602.1

>prot_H-paniculata_contig278.7602.1 ID=prot_H-paniculata_contig278.7602.1|Name=mRNA_H-paniculata_contig278.7602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=196bp
RTYLDSAEVDKVNKSPVAGSRPSGKSRWSRLRTPWEIKAALSILMGEAVK
ARVVRSNITASLVERDSELRKLSHEVATLRLKVAAPEQHICAPNPQSAAR
DSDESIAIARKEKEGTKMGRNGGYSNRIKTAGPKIVVDRKERQADRDSDQ
QPDTTLEDNQELESTDKDDGLEGARPHSRSVVWGEEEERDLVCSTG
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mRNA from alignment at H-paniculata_contig278:22565..24809+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig278.7602.1 ID=mRNA_H-paniculata_contig278.7602.1|Name=mRNA_H-paniculata_contig278.7602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2245bp|location=Sequence derived from alignment at H-paniculata_contig278:22565..24809+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAACGTATCTGGATTCGGCAGAGGTTGATAAAGTCAACAAGTCTCCGGT
GGCGGGGTCAAGACCCTCAGGAAAGTCGCGGTGGTCGCGTTTGCGCACCC
CCTGGGAGATCAAAGCCGCCCTATCGATACTTATGGGTGAGGCCGTCAAG
GCCAGGGTTGTCCGGTGAGAGCATAACTTGTGGTTGTCCCTTCTCTCTCT
TATGTGTTTTTAGTAGATGGTGAAATATCGAAAAGAAGCCATTTATTCAT
TGCTTTTCGATCTTTATGGTATGTTGTCCACTTTCGCCCCGTCACACACA
CTTTCGAGGGGGAGGGTAGGGAAGTTCGCCCGAGCATCAACCATTAGCAT
AGTATAATACTCTACCCCCATCCGACTGTCGACCACCACCTGGAGATGTG
CTATCCGAAATCACTGAGCCTCCTCCCCCCACCGCCAGCATGTGCACCTA
CTAGTCTAGTGCACCCACTCTGTACCCCCCCCATATGGTCGACCTGTGCC
CCTACTAATGTAGTGCACACATGCTGTATCCCTACTAGTGTAGTGCACAC
ATGCTGTATCCCTACTAGTGTGGTGCACATACGCTGTACCCCCCTGAACG
GCCTGCATGTGCATGTGGTCGTGACGCCTGCATAAAAGCGCCTCCTCTAT
GAATGGCCAGTATATGTGGTGATTGTAGAGTTACCACACGCGGCATCCCC
TGCCGACGTTCCCCCAGACATGATTGAACCTCAGGTACCTTCATCTTCGT
CGATGTGAACATAATTATTCGCATCGTGATGCCACTTGACCAACTCAGTT
GCTACTCCACCCCCGGACATGAGTTGATCCCCAGGTACCTCCATTTGCGT
CGATGTGAACATAACTATGCACTACGCATGCCACTTGACCAACTCAGTCG
CTACAACGGTGCGCATGCCATTGCGGTCTTATCATGACGAACCTAGTATT
GTCGTAGTATGTGGAACACCAATTGGATAGAATCCCCCTAAATAGCCGCG
TGCTCACGGCCACTACACGCATGCACTTTCACTATTCCAGAACATGAATG
AACAACCCGCAGGGAATACCGACCGACCACTTCCGCACTGCTTACTCGGT
CGGACATTGTGTCGGAAATTTCTCCGCGCCATTTCCCCCGTCGAAGAGCA
CAGATGGGTGGTTGGAAGAACACTCCGAACGGGTAACTCTCACATACATG
AATCCAAACGGGCAAGGAAAAACACCGCCTCTGGAATAAGAAATATGAAG
AGGAAATAAAATAATGCAGTGAAAGAGAGAGAGGGAAAGAGATGTATACG
ATATTTAGTTTTTTGGTGTCTCTCTTTTGTGAGTGAGTACACGTTCTGCA
TGAGTGTATTTGATCTCTTTTGCCTCCATTTGTACTTGGGAAGTACGGTC
TGCGAGAGCCTCGTAACCGCAGGCGTGACGATGACGTGCCCACTAGTTGA
TGTATCATACCGTGTCCTTAAGGGTCGATTATGGAGGAGGGAAAAGGGCG
TGACCATCATGTCATGGTCGTCGTTGCCCCACTCCAGTTCTGTAGAGCCC
GTCAGTGCATCAATGGGGAAAGTGGTTATCAGGTGTCGTTGTTATGTGTT
GCCTTGCGACCATTTGCAGACCCGGCGTTGGCTGGTGGTAGGTAGGTGAC
GGGAATCGCACAATAAAGAAGATACCATTGTCATCGTGGCTCGAGTGTTT
TTGTTCATCTTGTGCAACGGTTCTAGGTCATTAGTGGAGTCCACTTTTAT
GTTACTTTCTTTTGACGGACCACCGTAATCTCTCTTCCCCCTTGGAATCT
ACTGCCTTTGCATGTTCAAGATCAAACATCACCGCCAGTTTGGTCGAAAG
GGATAGCGAGCTCCGCAAGCTTTCGCACGAAGTGGCGACTCTGCGCTTGA
AAGTGGCCGCCCCTGAGCAGCACATATGTGCGCCCAACCCACAATCCGCC
GCCAGGGACAGCGATGAGTCTATAGCGATTGCGAGGAAAGAAAAGGAAGG
GACGAAGATGGGTCGAAACGGTGGATACTCGAACCGCATCAAAACTGCGG
GACCGAAAATTGTCGTTGACAGGAAAGAACGGCAGGCCGATCGGGACTCC
GACCAGCAACCGGACACCACATTGGAAGATAATCAAGAGCTGGAAAGTAC
GGACAAGGATGATGGACTCGAGGGGGCGAGGCCGCATTCTCGGTCCGTGG
TGTGGGGTGAAGAGGAAGAGCGAGATCTTGTCTGTAGTACCGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig278:22565..24809+

>mRNA_H-paniculata_contig278.7602.1 ID=mRNA_H-paniculata_contig278.7602.1|Name=mRNA_H-paniculata_contig278.7602.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at H-paniculata_contig278:22565..24809+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAACGTATCTGGATTCGGCAGAGGTTGATAAAGTCAACAAGTCTCCGGT
GGCGGGGTCAAGACCCTCAGGAAAGTCGCGGTGGTCGCGTTTGCGCACCC
CCTGGGAGATCAAAGCCGCCCTATCGATACTTATGGGTGAGGCCGTCAAG
GCCAGGGTTGTCCGCGAACGTATCTGGATTCGGCAGAGGTTGATAAAGTC
AACAAGTCTCCGGTGGCGGGGTCAAGACCCTCAGGAAAGTCGCGGTGGTC
GCGTTTGCGCACCCCCTGGGAGATCAAAGCCGCCCTATCGATACTTATGG
GTGAGGCCGTCAAGGCCAGGGTTGTCCGATCAAACATCACCGCCAGTTTG
GTCGAAAGGGATAGCGAGCTCCGCAAGCTTTCGCACGAAGTGGCGACTCT
GCGCTTGAAAGTGGCCGCCCCTGAGCAGCACATATGTGCGCCCAACCCAC
AATCCGCCGCCAGGGACAGCGATGAGTCTATAGCGATTGCGAGGAAAGAA
AAGGAAGGGACGAAGATGGGTCGAAACGGTGGATACTCGAACCGCATCAA
AACTGCGGGACCGAAAATTGTCGTTGACAGGAAAGAACGGCAGGCCGATC
GGGACTCCGACCAGCAACCGGACACCACATTGGAAGATAATCAAGAGCTG
GAAAGTACGGACAAGGATGATGGACTCGAGGGGGCGAGGCCGCATTCTCG
GTCCGTGGTGTGGGGTGAAGAGGAAGAGCGAGATCTTGTCTGTAGTACCG
GTATCAAACATCACCGCCAGTTTGGTCGAAAGGGATAGCGAGCTCCGCAA
GCTTTCGCACGAAGTGGCGACTCTGCGCTTGAAAGTGGCCGCCCCTGAGC
AGCACATATGTGCGCCCAACCCACAATCCGCCGCCAGGGACAGCGATGAG
TCTATAGCGATTGCGAGGAAAGAAAAGGAAGGGACGAAGATGGGTCGAAA
CGGTGGATACTCGAACCGCATCAAAACTGCGGGACCGAAAATTGTCGTTG
ACAGGAAAGAACGGCAGGCCGATCGGGACTCCGACCAGCAACCGGACACC
ACATTGGAAGATAATCAAGAGCTGGAAAGTACGGACAAGGATGATGGACT
CGAGGGGGCGAGGCCGCATTCTCGGTCCGTGGTGTGGGGTGAAGAGGAAG
AGCGAGATCTTGTCTGTAGTACCGGT
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