mRNA_H-paniculata_contig27797.7599.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27797.7599.1
Unique NamemRNA_H-paniculata_contig27797.7599.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig27797.7599.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 3.720e-10
Identity = 30/67 (44.78%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    4 ICRELGF-QLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLAD 201
            +  ELG+ QL  F++ +D R AL L +N  +SNRS+HI++R+ ALR W+ S+++ +DHV S+  L+D
Sbjct:  793 LMGELGWSQLLKFKLLTDTRSALSLFSNGTFSNRSRHISVRYEALRGWVSSSRIALDHVPSSHMLSD 859          
BLAST of mRNA_H-paniculata_contig27797.7599.1 vs. uniprot
Match: A0A8J6HAM5_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HAM5_TENMO)

HSP 1 Score: 53.1 bits (126), Expect = 2.270e-7
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   13 ELGFQ-LDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLAD 201
            ELG   L +  V  DN GAL LAAN  + N+SKHI I++  +RD ++   L + HV+SA+ +AD
Sbjct:   19 ELGLDNLSSVVVYEDNLGALKLAANPTFHNKSKHIDIKYHFIRDAVKEKILSLSHVSSAEMVAD 82          
BLAST of mRNA_H-paniculata_contig27797.7599.1 vs. uniprot
Match: A0A8J6HGY6_TENMO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6HGY6_TENMO)

HSP 1 Score: 54.3 bits (129), Expect = 6.580e-7
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   13 ELGFQ-LDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLAD 201
            ELG   L +  V  DN GAL LAAN  + NRSKHI I++  +RD ++   L + HV+SA+ +AD
Sbjct:  307 ELGLDHLSSVVVYEDNLGALKLAANPTFHNRSKHIDIKYHFIRDAVKEKILSLSHVSSAEMVAD 370          
BLAST of mRNA_H-paniculata_contig27797.7599.1 vs. uniprot
Match: A0A8J6L9W6_TENMO (Uncharacterized protein n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6L9W6_TENMO)

HSP 1 Score: 52.8 bits (125), Expect = 2.390e-6
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 1
Query:   13 ELGFQ-LDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLAD 201
            ELG   L +  V  DN GAL LAAN  + NRSKHI I++  +RD ++   L + HV+S + +AD
Sbjct: 1120 ELGLDHLSSVVVYEDNLGALKLAANPTFHNRSKHIDIKYHFIRDAVKEKILSLSHVSSTEMVAD 1183          
BLAST of mRNA_H-paniculata_contig27797.7599.1 vs. uniprot
Match: A0A060SIA2_PYCCI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SIA2_PYCCI)

HSP 1 Score: 52.4 bits (124), Expect = 3.260e-6
Identity = 25/67 (37.31%), Postives = 42/67 (62.69%), Query Frame = 1
Query:    1 NICRELGFQLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLAD 201
            N+  E+G+QL    +  DN+G+L + +N    +RSKHI IR+ A+R++I + Q+ +  V  +D  AD
Sbjct:  668 NLLSEIGYQLGPIPIAGDNQGSLFMGSNPVTESRSKHIDIRYHAIREYIENKQVELFFVDGSDNPAD 734          
BLAST of mRNA_H-paniculata_contig27797.7599.1 vs. uniprot
Match: A0A060SQN8_PYCCI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SQN8_PYCCI)

HSP 1 Score: 52.0 bits (123), Expect = 4.370e-6
Identity = 25/67 (37.31%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    1 NICRELGFQLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLAD 201
            N+  E+G+QL    +  DN+G L + +N    +RSKHI IR+ A+R++I + Q+ +  V  +D  AD
Sbjct:  438 NLLSEIGYQLGPIPIAGDNQGPLFMGSNPVTESRSKHIDIRYHAIREYIENKQIELFFVDGSDNPAD 504          
BLAST of mRNA_H-paniculata_contig27797.7599.1 vs. uniprot
Match: A0A060SLG8_PYCCI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SLG8_PYCCI)

HSP 1 Score: 52.0 bits (123), Expect = 4.420e-6
Identity = 24/67 (35.82%), Postives = 42/67 (62.69%), Query Frame = 1
Query:    1 NICRELGFQLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLAD 201
            N+  E+G+QL    +  DN+G+L + +N    +RSKHI IR+ A+R++I + Q+ +  +  +D  AD
Sbjct:  660 NLLSEIGYQLGPIPIAGDNQGSLFMGSNPVTESRSKHIDIRYHAIREYIENKQVELFFIDGSDNPAD 726          
BLAST of mRNA_H-paniculata_contig27797.7599.1 vs. uniprot
Match: UPI00100E58EB (DDE-type integrase/transposase/recombinase n=1 Tax=Enterobacter cloacae complex sp. GF14B TaxID=2511982 RepID=UPI00100E58EB)

HSP 1 Score: 51.6 bits (122), Expect = 6.100e-6
Identity = 25/66 (37.88%), Postives = 41/66 (62.12%), Query Frame = 1
Query:    4 ICRELGFQLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLAD 201
               ELGF+ DN  + SD++ A+HLA NS + +R+KHI +R+  +R  +   QL +  V +++  AD
Sbjct: 1047 FLEELGFKQDNCVLYSDSQSAIHLAKNSAFHSRTKHIEVRYHFIRTLLEEGQLKLGKVHTSENPAD 1112          
BLAST of mRNA_H-paniculata_contig27797.7599.1 vs. uniprot
Match: A0A5N6LLG6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LLG6_9ASTR)

HSP 1 Score: 51.2 bits (121), Expect = 8.010e-6
Identity = 24/64 (37.50%), Postives = 37/64 (57.81%), Query Frame = 1
Query:    4 ICRELGFQLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQL 195
              +ELGF    + V  DN+ A+HLA NS +  R+KHI +R+  +RD +   +  +D V + D L
Sbjct:  289 FSQELGFMQQRYVVLCDNQSAIHLAKNSTFHKRTKHIDVRYHWIRDALEDKRFELDKVHTDDNL 352          
BLAST of mRNA_H-paniculata_contig27797.7599.1 vs. uniprot
Match: A0A699JW68_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699JW68_TANCI)

HSP 1 Score: 49.7 bits (117), Expect = 8.740e-6
Identity = 23/66 (34.85%), Postives = 38/66 (57.58%), Query Frame = 1
Query:    4 ICRELGFQLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLAD 201
              +ELGF+   + +  DN+ A+HLA NS +  R+KHI +R+  +RD I      ++ V + D  +D
Sbjct:   51 FLQELGFKQQRYAILCDNQSAIHLAKNSMFHKRTKHIDVRYHWIRDAIEDGMFELNKVHTDDNASD 116          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27797.7599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JV56_9PHAE3.720e-1044.78Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J6HAM5_TENMO2.270e-745.31Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A8J6HGY6_TENMO6.580e-746.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8J6L9W6_TENMO2.390e-645.31Uncharacterized protein n=1 Tax=Tenebrio molitor T... [more]
A0A060SIA2_PYCCI3.260e-637.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060SQN8_PYCCI4.370e-637.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060SLG8_PYCCI4.420e-635.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00100E58EB6.100e-637.88DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A5N6LLG6_9ASTR8.010e-637.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A699JW68_TANCI8.740e-634.85Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27797contigH-paniculata_contig27797:2630..2830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size202
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.5791712-CDS-H-paniculata_contig27797:2629..28301622929840.5791712-CDS-H-paniculata_contig27797:2629..2830Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27797 2630..2830 +
1691481034.4663644-CDS-H-paniculata_contig27797:2629..28301691481034.4663644-CDS-H-paniculata_contig27797:2629..2830Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27797 2630..2830 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27797.7599.1prot_H-paniculata_contig27797.7599.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27797 2630..2830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27797.7599.1

>prot_H-paniculata_contig27797.7599.1 ID=prot_H-paniculata_contig27797.7599.1|Name=mRNA_H-paniculata_contig27797.7599.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
NICRELGFQLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIR
SNQLVIDHVASADQLAD
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mRNA from alignment at H-paniculata_contig27797:2630..2830+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27797.7599.1 ID=mRNA_H-paniculata_contig27797.7599.1|Name=mRNA_H-paniculata_contig27797.7599.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig27797:2630..2830+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACATTTGCCGAGAGCTCGGTTTTCAGCTGGACAACTTTGAAGTGCGTTC GGACAACAGGGGCGCGCTCCACTTAGCAGCTAATAGCAATTACTCCAACC GCAGTAAACACATCGCCATCAGGTTCGCAGCACTAAGGGACTGGATCAGG AGCAATCAGCTTGTCATCGACCATGTAGCAAGCGCTGATCAGCTAGCTGA C
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Coding sequence (CDS) from alignment at H-paniculata_contig27797:2630..2830+

>mRNA_H-paniculata_contig27797.7599.1 ID=mRNA_H-paniculata_contig27797.7599.1|Name=mRNA_H-paniculata_contig27797.7599.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig27797:2630..2830+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACATTTGCCGAGAGCTCGGTTTTCAGCTGGACAACTTTGAAGTGCGTTC
GGACAACAGGGGCGCGCTCCACTTAGCAGCTAATAGCAATTACTCCAACC
GCAGTAAACACATCGCCATCAGGTTCGCAGCACTAAGGGACTGGATCAGG
AGCAATCAGCTTGTCATCGACCATGTAGCAAGCGCTGATCAGCTAGCTGA
CAACATTTGCCGAGAGCTCGGTTTTCAGCTGGACAACTTTGAAGTGCGTT
CGGACAACAGGGGCGCGCTCCACTTAGCAGCTAATAGCAATTACTCCAAC
CGCAGTAAACACATCGCCATCAGGTTCGCAGCACTAAGGGACTGGATCAG
GAGCAATCAGCTTGTCATCGACCATGTAGCAAGCGCTGATCAGCTAGCTG
AC
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