prot_H-paniculata_contig27783.7598.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig27783.7598.1
Unique Nameprot_H-paniculata_contig27783.7598.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length187
Homology
BLAST of mRNA_H-paniculata_contig27783.7598.1 vs. uniprot
Match: A0A6H5KMG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG0_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.010e-29
Identity = 76/190 (40.00%), Postives = 112/190 (58.95%), Query Frame = 0
Query:    3 VRNQLMNKFNITDLGEVSLILGMEVLRNRQEGNLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGE-DSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMRQPALTGFCDSSYTT-----RSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGF 186
            V+ +L  +F +TDLGE SL+LGME+ R+R+   L +SQ  Y  S+LERFGMS + PT TPG  ++ +   + + TLLD   T++YQ ++GSL+++    R+DI   +     F     L  F DS++       +ST+  +  LAN  + F S LQ +TA ST EAEL+A A   K+  +  N+  ELGF
Sbjct:  521 VKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNNIQPEDTLLDEKETRKYQGIMGSLMYIALVLRYDI---MCATGGFK----LATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGF 703          
BLAST of mRNA_H-paniculata_contig27783.7598.1 vs. uniprot
Match: A0A6H5KDK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK0_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.230e-29
Identity = 76/219 (34.70%), Postives = 113/219 (51.60%), Query Frame = 0
Query:    4 RNQLMNKFNITDLGEVSLILGMEVLRNRQEGNLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMRQPA------------------------------LTGFCDSSYTT-----RSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFQ 187
            + +L ++F +TD+GEV  ILG++V R+ ++G L +SQ  YV ++LERFGM  ANP +                +L     K YQ+M GS++ L QCTRFD+ ++  Q ++    PA                              L  F DSS+       RSTTG +FFLA GL+ + ++ Q +TA ST EAE+ AL+  A++  Y+ N   EL F+
Sbjct:  176 KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPDQ----------------ILGPTDKKIYQSMTGSILNLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHDVRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFK 378          
BLAST of mRNA_H-paniculata_contig27783.7598.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 1.470e-26
Identity = 58/137 (42.34%), Postives = 87/137 (63.50%), Query Frame = 0
Query:    3 VRNQLMNKFNITDLGEVSLILGMEVLRNRQEGNLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMRQPALTGFCDSSYTTRSTTGTMFF 139
            V+ +L  +F +TDLGE SL+LGME+ R+R+   L +SQ  Y  S+LERFGMS + PT TPG  ++ +    + TLLD   T++YQ +VGSL+++ Q  R+DI ++  Q AR M +P+      + +T R   GT+ F
Sbjct:  135 VKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDF 271          
BLAST of mRNA_H-paniculata_contig27783.7598.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.750e-25
Identity = 57/137 (41.61%), Postives = 87/137 (63.50%), Query Frame = 0
Query:    3 VRNQLMNKFNITDLGEVSLILGMEVLRNRQEGNLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMRQPALTGFCDSSYTTRSTTGTMFF 139
            V+ +L  +F +TDLGE SL+LGME+ R+R+   L +SQ  Y  S+LERFG+S + PT TPG  ++ +    + TLLD   T++YQ +VGSL+++ Q  R+DI ++  Q AR M +P+      + +T R   GT+ F
Sbjct: 1364 VKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDF 1500          
BLAST of mRNA_H-paniculata_contig27783.7598.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 5.680e-25
Identity = 57/137 (41.61%), Postives = 86/137 (62.77%), Query Frame = 0
Query:    3 VRNQLMNKFNITDLGEVSLILGMEVLRNRQEGNLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMRQPALTGFCDSSYTTRSTTGTMFF 139
            V+ +L  +F +TDLGE SL+L ME+ R+R+   L +SQ  Y  S+LERFGMS + PT TPG  ++ +    + TLLD   T++YQ +VGSL+++ Q  R+DI ++  Q AR M +P+      + +T R   GT+ F
Sbjct:  695 VKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDF 831          
BLAST of mRNA_H-paniculata_contig27783.7598.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 5.830e-25
Identity = 66/184 (35.87%), Postives = 98/184 (53.26%), Query Frame = 0
Query:    3 VRNQLMNKFNITDLGEVSLILGMEVLRNRQEGNLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMRQPALTGFCDSSYTTRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGF 186
            ++N+L  +  +TD+GEV L+LGME+ R+R +G L  SQ  Y  S+LERFGMS   PT TPG  ++ +    + TLL    T+ YQ ++G L+++ Q  R+DI ++  Q AR M +P+      + +T R   GT                    T TTE +LIA     K+  +  N+  ELGF
Sbjct:  971 IKNKLKQRSKMTDMGEVKLVLGMEIKRDRNQGTLTTSQEAYSKSILERFGMSERKPTSTPGYGSELSNKQPEDTLLGEEETRRYQGIMGCLMYIAQVLRYDIMYATGQLARPMTKPSKIHMVAAKHTLRYVAGTTDLR----------------TRTTE-KLIASVLAMKEAVFCSNMVSELGF 1137          
BLAST of mRNA_H-paniculata_contig27783.7598.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.460e-24
Identity = 66/175 (37.71%), Postives = 98/175 (56.00%), Query Frame = 0
Query:   11 FNITDLGEVSLILGMEVLRNRQEGNLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMRQPALTGFCDSSYTTRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELG 185
            F +T++GEV L+LGM++ ++   G L +SQ  Y  S+LERFGMS   P  TPG  ++ +    + TLLD   T+ YQ +VG L+++ Q  R+D+  S  + A F        + ++    +S++  +  L N  V F S +Q  TA ST EAELIA A   K+  +  NI  ELG
Sbjct:  914 FKMTNMGEVKLVLGMDIKKDCNRGTLTISQEAYSKSILERFGMSECKPISTPGYGSELSNKQPEDTLLDEEETRRYQGIVGCLMYIAQVLRYDVIGS--KLATFSES----NWANNPDNGKSSSCYLTMLGNAPVSFKSGIQGPTAMSTMEAELIASALAMKEAVFCSNILTELG 1082          
BLAST of mRNA_H-paniculata_contig27783.7598.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 3.370e-24
Identity = 76/240 (31.67%), Postives = 123/240 (51.25%), Query Frame = 0
Query:    2 DVRNQLMNKFNITDLGEVSLILGMEVLRNRQEGNLQLSQ----------------YKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMRQPA------------------------------LTGFCDSSYT-------TRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYL--LNICRELGF 186
            D++ QL +KF +TD G   L+LGME+  ++++G + +SQ                +KYV+++L+++ M    P  TPG   +     E++  L+    K YQ +VGSL+FLT  TR++I ++V    R M +P                               L  +CD+S+         RS+TG +F LA G+V  +S LQK+TA S+  AE+IA+AA A++  +L  +++  ELGF
Sbjct:  104 DLKEQLSDKFKMTDGGPAELLLGMEI--SQRDGEITVSQXXXXXXXXXXXXXXXXHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAICLNEEDMKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMAAAAREAIFLQGVDLLSELGF 341          
BLAST of mRNA_H-paniculata_contig27783.7598.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 3.520e-24
Identity = 55/137 (40.15%), Postives = 82/137 (59.85%), Query Frame = 0
Query:    3 VRNQLMNKFNITDLGEVSLILGMEVLRNRQEGNLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMRQPALTGFCDSSYTTRSTTGTMFF 139
            ++ +L  +F +TD+GEV L+LGME+ R+R +G L +SQ  Y  S+LERFGMS   PT TPG  ++ +    + TLL    T+ YQ +VG LI++ Q  R+DI ++  Q  R M +P+      + +T R   GT  F
Sbjct:  672 IKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYGSELSNKQPEDTLLSEEETRRYQGIVGCLIYIAQVLRYDIMYATGQLTRPMAKPSKIHMVAAKHTLRYVAGTTDF 808          
BLAST of mRNA_H-paniculata_contig27783.7598.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.020e-23
Identity = 50/132 (37.88%), Postives = 78/132 (59.09%), Query Frame = 0
Query:    4 RNQLMNKFNITDLGEVSLILGMEVLRNRQEGNLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMRQPALTGFCDSSYTTRSTTG 135
            + +L ++F +TD+GEV  ILG++V R+ ++G L +SQ  YV ++LERFGM  ANP  TPG   + +T      +L     K YQ+M GS+++L QCTRFD+ ++  Q ++    PA      + +  R   G
Sbjct:   74 KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRG 205          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27783.7598.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMG0_9PHAE1.010e-2940.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KDK0_9PHAE1.230e-2934.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5U2_9PHAE1.470e-2642.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE1.750e-2541.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH5_9PHAE5.680e-2541.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KL30_9PHAE5.830e-2535.87Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K129_9PHAE1.460e-2437.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J897_9PHAE3.370e-2431.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL37_9PHAE3.520e-2440.15Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAK0_9PHAE4.020e-2337.88Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..62
e-value: 1.1E-8
score: 35.1
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..117
NoneNo IPR availablePANTHERPTHR11439:SF257coord: 2..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27783contigH-paniculata_contig27783:2006..2656 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27783.7598.1mRNA_H-paniculata_contig27783.7598.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig27783 2006..2656 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig27783.7598.1 ID=prot_H-paniculata_contig27783.7598.1|Name=mRNA_H-paniculata_contig27783.7598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=187bp
MDVRNQLMNKFNITDLGEVSLILGMEVLRNRQEGNLQLSQYKYVLSVLER
FGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCT
RFDICFSVTQAARFMRQPALTGFCDSSYTTRSTTGTMFFLANGLVHFSSR
LQKITATSTTEAELIALAACAKQGTYLLNICRELGFQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like