mRNA_H-paniculata_contig27783.7598.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig27783.7598.1 vs. uniprot
Match: A0A6H5KMG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG0_9PHAE) HSP 1 Score: 124 bits (312), Expect = 1.010e-29 Identity = 76/190 (40.00%), Postives = 112/190 (58.95%), Query Frame = 1
Query: 7 VRNQLMNKFNITDLGEVSLILGMEVLRNRQEGNLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGE-DSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMRQPALTGFCDSSYTT-----RSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGF 558
V+ +L +F +TDLGE SL+LGME+ R+R+ L +SQ Y S+LERFGMS + PT TPG ++ + + + TLLD T++YQ ++GSL+++ R+DI + F L F DS++ +ST+ + LAN + F S LQ +TA ST EAEL+A A K+ + N+ ELGF
Sbjct: 521 VKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNNIQPEDTLLDEKETRKYQGIMGSLMYIALVLRYDI---MCATGGFK----LATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGF 703
BLAST of mRNA_H-paniculata_contig27783.7598.1 vs. uniprot
Match: A0A6H5KDK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK0_9PHAE) HSP 1 Score: 123 bits (309), Expect = 1.230e-29 Identity = 76/219 (34.70%), Postives = 113/219 (51.60%), Query Frame = 1
Query: 10 RNQLMNKFNITDLGEVSLILGMEVLRNRQEGNLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMRQPA------------------------------LTGFCDSSYTT-----RSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGFQ 561
+ +L ++F +TD+GEV ILG++V R+ ++G L +SQ YV ++LERFGM ANP + +L K YQ+M GS++ L QCTRFD+ ++ Q ++ PA L F DSS+ RSTTG +FFLA GL+ + ++ Q +TA ST EAE+ AL+ A++ Y+ N EL F+
Sbjct: 176 KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPDQ----------------ILGPTDKKIYQSMTGSILNLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHDVRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFK 378
BLAST of mRNA_H-paniculata_contig27783.7598.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 114 bits (285), Expect = 1.470e-26 Identity = 58/137 (42.34%), Postives = 87/137 (63.50%), Query Frame = 1
Query: 7 VRNQLMNKFNITDLGEVSLILGMEVLRNRQEGNLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMRQPALTGFCDSSYTTRSTTGTMFF 417
V+ +L +F +TDLGE SL+LGME+ R+R+ L +SQ Y S+LERFGMS + PT TPG ++ + + TLLD T++YQ +VGSL+++ Q R+DI ++ Q AR M +P+ + +T R GT+ F
Sbjct: 135 VKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDF 271
BLAST of mRNA_H-paniculata_contig27783.7598.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 112 bits (281), Expect = 1.750e-25 Identity = 57/137 (41.61%), Postives = 87/137 (63.50%), Query Frame = 1
Query: 7 VRNQLMNKFNITDLGEVSLILGMEVLRNRQEGNLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMRQPALTGFCDSSYTTRSTTGTMFF 417
V+ +L +F +TDLGE SL+LGME+ R+R+ L +SQ Y S+LERFG+S + PT TPG ++ + + TLLD T++YQ +VGSL+++ Q R+DI ++ Q AR M +P+ + +T R GT+ F
Sbjct: 1364 VKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDF 1500
BLAST of mRNA_H-paniculata_contig27783.7598.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 111 bits (277), Expect = 5.680e-25 Identity = 57/137 (41.61%), Postives = 86/137 (62.77%), Query Frame = 1
Query: 7 VRNQLMNKFNITDLGEVSLILGMEVLRNRQEGNLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMRQPALTGFCDSSYTTRSTTGTMFF 417
V+ +L +F +TDLGE SL+L ME+ R+R+ L +SQ Y S+LERFGMS + PT TPG ++ + + TLLD T++YQ +VGSL+++ Q R+DI ++ Q AR M +P+ + +T R GT+ F
Sbjct: 695 VKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDF 831
BLAST of mRNA_H-paniculata_contig27783.7598.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE) HSP 1 Score: 111 bits (277), Expect = 5.830e-25 Identity = 66/184 (35.87%), Postives = 98/184 (53.26%), Query Frame = 1
Query: 7 VRNQLMNKFNITDLGEVSLILGMEVLRNRQEGNLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMRQPALTGFCDSSYTTRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELGF 558
++N+L + +TD+GEV L+LGME+ R+R +G L SQ Y S+LERFGMS PT TPG ++ + + TLL T+ YQ ++G L+++ Q R+DI ++ Q AR M +P+ + +T R GT T TTE +LIA K+ + N+ ELGF
Sbjct: 971 IKNKLKQRSKMTDMGEVKLVLGMEIKRDRNQGTLTTSQEAYSKSILERFGMSERKPTSTPGYGSELSNKQPEDTLLGEEETRRYQGIMGCLMYIAQVLRYDIMYATGQLARPMTKPSKIHMVAAKHTLRYVAGTTDLR----------------TRTTE-KLIASVLAMKEAVFCSNMVSELGF 1137
BLAST of mRNA_H-paniculata_contig27783.7598.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE) HSP 1 Score: 110 bits (274), Expect = 1.460e-24 Identity = 66/175 (37.71%), Postives = 98/175 (56.00%), Query Frame = 1
Query: 31 FNITDLGEVSLILGMEVLRNRQEGNLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMRQPALTGFCDSSYTTRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICRELG 555
F +T++GEV L+LGM++ ++ G L +SQ Y S+LERFGMS P TPG ++ + + TLLD T+ YQ +VG L+++ Q R+D+ S + A F + ++ +S++ + L N V F S +Q TA ST EAELIA A K+ + NI ELG
Sbjct: 914 FKMTNMGEVKLVLGMDIKKDCNRGTLTISQEAYSKSILERFGMSECKPISTPGYGSELSNKQPEDTLLDEEETRRYQGIVGCLMYIAQVLRYDVIGS--KLATFSES----NWANNPDNGKSSSCYLTMLGNAPVSFKSGIQGPTAMSTMEAELIASALAMKEAVFCSNILTELG 1082
BLAST of mRNA_H-paniculata_contig27783.7598.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE) HSP 1 Score: 108 bits (271), Expect = 3.370e-24 Identity = 76/240 (31.67%), Postives = 123/240 (51.25%), Query Frame = 1
Query: 4 DVRNQLMNKFNITDLGEVSLILGMEVLRNRQEGNLQLSQ----------------YKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMRQPA------------------------------LTGFCDSSYT-------TRSTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYL--LNICRELGF 558
D++ QL +KF +TD G L+LGME+ ++++G + +SQ +KYV+++L+++ M P TPG + E++ L+ K YQ +VGSL+FLT TR++I ++V R M +P L +CD+S+ RS+TG +F LA G+V +S LQK+TA S+ AE+IA+AA A++ +L +++ ELGF
Sbjct: 104 DLKEQLSDKFKMTDGGPAELLLGMEI--SQRDGEITVSQXXXXXXXXXXXXXXXXHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAICLNEEDMKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMAAAAREAIFLQGVDLLSELGF 341
BLAST of mRNA_H-paniculata_contig27783.7598.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 108 bits (271), Expect = 3.520e-24 Identity = 55/137 (40.15%), Postives = 82/137 (59.85%), Query Frame = 1
Query: 7 VRNQLMNKFNITDLGEVSLILGMEVLRNRQEGNLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMRQPALTGFCDSSYTTRSTTGTMFF 417
++ +L +F +TD+GEV L+LGME+ R+R +G L +SQ Y S+LERFGMS PT TPG ++ + + TLL T+ YQ +VG LI++ Q R+DI ++ Q R M +P+ + +T R GT F
Sbjct: 672 IKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYGSELSNKQPEDTLLSEEETRRYQGIVGCLIYIAQVLRYDIMYATGQLTRPMAKPSKIHMVAAKHTLRYVAGTTDF 808
BLAST of mRNA_H-paniculata_contig27783.7598.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE) HSP 1 Score: 102 bits (254), Expect = 4.020e-23 Identity = 50/132 (37.88%), Postives = 78/132 (59.09%), Query Frame = 1
Query: 10 RNQLMNKFNITDLGEVSLILGMEVLRNRQEGNLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMRQPALTGFCDSSYTTRSTTG 405
+ +L ++F +TD+GEV ILG++V R+ ++G L +SQ YV ++LERFGM ANP TPG + +T +L K YQ+M GS+++L QCTRFD+ ++ Q ++ PA + + R G
Sbjct: 74 KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRG 205 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27783.7598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig27783.7598.1 >prot_H-paniculata_contig27783.7598.1 ID=prot_H-paniculata_contig27783.7598.1|Name=mRNA_H-paniculata_contig27783.7598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=187bp MDVRNQLMNKFNITDLGEVSLILGMEVLRNRQEGNLQLSQYKYVLSVLERback to top mRNA from alignment at H-paniculata_contig27783:2006..2656+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig27783.7598.1 ID=mRNA_H-paniculata_contig27783.7598.1|Name=mRNA_H-paniculata_contig27783.7598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=651bp|location=Sequence derived from alignment at H-paniculata_contig27783:2006..2656+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig27783:2006..2656+ >mRNA_H-paniculata_contig27783.7598.1 ID=mRNA_H-paniculata_contig27783.7598.1|Name=mRNA_H-paniculata_contig27783.7598.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at H-paniculata_contig27783:2006..2656+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |