mRNA_H-paniculata_contig27712.7591.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27712.7591.1
Unique NamemRNA_H-paniculata_contig27712.7591.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27712.7591.1 vs. uniprot
Match: D7G8K5_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K5_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 3.830e-19
Identity = 54/77 (70.13%), Postives = 64/77 (83.12%), Query Frame = 3 
Query:  891 MAFLDAQIKTQRASEPCYAALLRSTTEAMRAKNPAWAKAQDKEKPSKSTITNARRGQLEGALQTRLEEENKKRSKSA 1121
            +AFLDAQI+ +R +EPCYA+LLRSTT+AMR  NP WA AQDK KP++S IT ARR QL+GALQTRL EE KKR KS+
Sbjct: 1158 LAFLDAQIRKERRAEPCYASLLRSTTDAMRQNNPRWAAAQDKGKPARSAITGARRAQLKGALQTRLTEEEKKRGKSS 1234
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BLAST of mRNA_H-paniculata_contig27712.7591.1 vs. uniprot
Match: A0A6H5KL97_9PHAE (R3H domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL97_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 4.350e-19
Identity = 53/77 (68.83%), Postives = 64/77 (83.12%), Query Frame = 3 
Query:  891 MAFLDAQIKTQRASEPCYAALLRSTTEAMRAKNPAWAKAQDKEKPSKSTITNARRGQLEGALQTRLEEENKKRSKSA 1121
            +AFLDAQI+ +R +EPCYA+LLRSTT+AMR  NP WA AQD+ KP++S IT ARR QL+GALQTRL EE KKR KS+
Sbjct:  454 LAFLDAQIRKERRAEPCYASLLRSTTDAMRQNNPRWAAAQDRGKPARSAITGARRAQLKGALQTRLTEEEKKRGKSS 530
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27712.7591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8K5_ECTSI3.830e-1970.13R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KL97_9PHAE4.350e-1968.83R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27712contigH-paniculata_contig27712:124..1568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue5.5e-20
Seed eggNOG ortholog2880.D7G8K5
Preferred nameIGHMBP2
KEGG koko:K19036,ko:K19783
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0000122,GO:0000166,GO:0000228,GO:0000278,GO:0000976,GO:0000977,GO:0000981,GO:0000982,GO:0001012,GO:0001067,GO:0001078,GO:0001227,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003697,GO:0003700,GO:0003723,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006310,GO:0006355,GO:0006357,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007399,GO:0007417,GO:0008026,GO:0008094,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021953,GO:0022008,GO:0022402,GO:0022607,GO:0022616,GO:0030154,GO:0030182,GO:0030424,GO:0030426,GO:0030427,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032574,GO:0032575,GO:0032991,GO:0033202,GO:0033203,GO:0033260,GO:0033267,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036477,GO:0042623,GO:0042995,GO:0043005,GO:0043021,GO:0043022,GO:0043025,GO:0043043,GO:0043139,GO:0043141,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043603,GO:0043604,GO:0043621,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044297,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044463,GO:0044464,GO:0044786,GO:0044877,GO:0045892,GO:0045934,GO:0046483,GO:0048471,GO:0048513,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050905,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051259,GO:0051260,GO:0051276,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097458,GO:0120025,GO:0120038,GO:0140097,GO:0140098,GO:0140110,GO:0150034,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902679,GO:1902969,GO:1902983,GO:1903047,GO:1903459,GO:1903506,GO:1903507,GO:1990837,GO:1990904,GO:1990955,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.ATP-dependent 5'-3' RNA helicase activity
EggNOG OGsCOG1112@1,KOG1803@2759
EC3.6.4.12,3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03012,ko03032
Exons1
Model size1445
Cds size1143
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27712.7591.1prot_H-paniculata_contig27712.7591.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27712 129..1271 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929839.6359289-UTR-H-paniculata_contig27712:123..1281622929839.6359289-UTR-H-paniculata_contig27712:123..128Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27712 124..128 +
1691481033.9655979-UTR-H-paniculata_contig27712:123..1281691481033.9655979-UTR-H-paniculata_contig27712:123..128Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27712 124..128 +
1622929839.65923-UTR-H-paniculata_contig27712:1271..15681622929839.65923-UTR-H-paniculata_contig27712:1271..1568Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27712 1272..1568 +
1691481033.988302-UTR-H-paniculata_contig27712:1271..15681691481033.988302-UTR-H-paniculata_contig27712:1271..1568Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27712 1272..1568 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929839.6470454-CDS-H-paniculata_contig27712:128..12711622929839.6470454-CDS-H-paniculata_contig27712:128..1271Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27712 129..1271 +
1691481033.978845-CDS-H-paniculata_contig27712:128..12711691481033.978845-CDS-H-paniculata_contig27712:128..1271Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27712 129..1271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27712.7591.1

>prot_H-paniculata_contig27712.7591.1 ID=prot_H-paniculata_contig27712.7591.1|Name=mRNA_H-paniculata_contig27712.7591.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=381bp
MEVQGVASEGDTLALPAELTARQRALVHETAETLGLGHVSRGEGPLRRAI
LSRVVGVDAQRRNAEVDARQLPRIASIDRSDRSTCVETVVNFDLATATGF
MALGTEDEDSDATDSGVSGLPEEPTAAAVNKASNSCSSAPVQHEGSDSPP
DPNIRVECTSPAILSSATAAAASRDTAGRFLPTENALLKDLHAARAARRP
PPPPAQAKGRQKKGKSAASTAGDQGFAVELASANGGGRGGAKKKSASKRG
GSAKKGKNKGGGGWGGGEAFGNGGAKVNNTSASEVGGGGGDSDDEMAFLD
AQIKTQRASEPCYAALLRSTTEAMRAKNPAWAKAQDKEKPSKSTITNARR
GQLEGALQTRLEEENKKRSKSAGNTEKNSR*
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mRNA from alignment at H-paniculata_contig27712:124..1568+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27712.7591.1 ID=mRNA_H-paniculata_contig27712.7591.1|Name=mRNA_H-paniculata_contig27712.7591.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1445bp|location=Sequence derived from alignment at H-paniculata_contig27712:124..1568+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAAATGGAAGTGCAAGGCGTTGCGTCAGAGGGAGATACACTCGCTCTT
CCCGCAGAGCTCACCGCCCGCCAGCGGGCACTCGTTCATGAAACCGCAGA
AACACTAGGATTGGGGCATGTTAGCCGAGGAGAAGGTCCCCTTCGACGTG
CTATTCTATCGAGGGTTGTTGGGGTAGATGCTCAACGGCGCAACGCAGAG
GTTGATGCACGGCAACTACCACGCATCGCTAGTATTGATCGTAGTGACCG
TAGCACTTGTGTTGAGACCGTCGTGAATTTCGATCTCGCCACTGCAACTG
GTTTCATGGCATTGGGTACAGAGGACGAAGACTCGGATGCCACCGATTCC
GGCGTGAGCGGTTTGCCAGAGGAGCCGACCGCAGCCGCCGTGAACAAGGC
AAGCAACTCCTGCTCCTCAGCACCTGTTCAACACGAGGGTTCTGATTCTC
CTCCGGACCCAAATATCCGAGTAGAGTGCACCTCTCCTGCTATTCTTTCT
TCTGCTACCGCTGCTGCCGCAAGTAGAGATACCGCCGGTAGGTTTTTACC
GACCGAAAATGCTCTCCTCAAGGATTTGCATGCTGCGCGAGCAGCCCGGC
GGCCGCCGCCGCCTCCGGCTCAGGCAAAGGGACGACAAAAGAAAGGCAAG
TCGGCAGCTTCAACTGCGGGTGATCAAGGATTCGCCGTCGAGCTTGCCTC
CGCTAATGGTGGTGGCCGTGGTGGGGCTAAGAAGAAGTCTGCCTCAAAGA
GAGGTGGATCTGCCAAGAAGGGGAAGAACAAAGGAGGAGGAGGCTGGGGA
GGAGGAGAGGCTTTCGGCAACGGCGGGGCCAAGGTAAATAACACCTCTGC
GTCCGAAGTTGGAGGTGGAGGGGGCGACAGTGACGATGAAATGGCGTTCC
TAGATGCTCAAATCAAGACACAGCGCGCTTCCGAGCCATGCTATGCTGCG
CTGCTTAGATCTACAACGGAGGCCATGCGGGCGAAGAATCCGGCCTGGGC
AAAAGCGCAAGACAAGGAGAAACCCTCAAAATCAACTATTACGAATGCGA
GGAGGGGACAACTAGAGGGTGCACTTCAGACGCGGTTGGAGGAAGAAAAC
AAGAAACGATCCAAATCAGCAGGGAACACAGAGAAGAACTCGCGATGACA
AAGGAGGACACGAGTAGAGCTACAAGTATAGACCGGCTGCTAATATCGGG
GTGCAGTTACACAAGGAAGGCGGTGAAGCGTGTGTCAACTGTGATGGAAG
TACGAACTGCACCCATGGCCCATCTCCAAGAGTCTTAACCTATAGCCGCG
TTTAGACTGTTAAAAAGTCGTTATCTATGAAAGAGCTACCTTCGAACTCA
TATGTAGAAGTATTTCTGGGTACGCCATTAGAACCAAGGCGCATCTATTG
CTCGCAATCAGAAATCCGATCAAAACTAATCAGCAGAAATCAAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig27712:124..1568+

>mRNA_H-paniculata_contig27712.7591.1 ID=mRNA_H-paniculata_contig27712.7591.1|Name=mRNA_H-paniculata_contig27712.7591.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2286bp|location=Sequence derived from alignment at H-paniculata_contig27712:124..1568+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGTGCAAGGCGTTGCGTCAGAGGGAGATACACTCGCTCTTCCCGC
AGAGCTCACCGCCCGCCAGCGGGCACTCGTTCATGAAACCGCAGAAACAC
TAGGATTGGGGCATGTTAGCCGAGGAGAAGGTCCCCTTCGACGTGCTATT
CTATCGAGGGTTGTTGGGGTAGATGCTCAACGGCGCAACGCAGAGGTTGA
TGCACGGCAACTACCACGCATCGCTAGTATTGATCGTAGTGACCGTAGCA
CTTGTGTTGAGACCGTCGTGAATTTCGATCTCGCCACTGCAACTGGTTTC
ATGGCATTGGGTACAGAGGACGAAGACTCGGATGCCACCGATTCCGGCGT
GAGCGGTTTGCCAGAGGAGCCGACCGCAGCCGCCGTGAACAAGGCAAGCA
ACTCCTGCTCCTCAGCACCTGTTCAACACGAGGGTTCTGATTCTCCTCCG
GACCCAAATATCCGAGTAGAGTGCACCTCTCCTGCTATTCTTTCTTCTGC
TACCGCTGCTGCCGCAAGTAGAGATACCGCCGGTAGGTTTTTACCGACCG
AAAATGCTCTCCTCAAGGATTTGCATGCTGCGCGAGCAGCCCGGCGGCCG
CCGCCGCCTCCGGCTCAGGCAAAGGGACGACAAAAGAAAGGCAAGTCGGC
AGCTTCAACTGCGGGTGATCAAGGATTCGCCGTCGAGCTTGCCTCCGCTA
ATGGTGGTGGCCGTGGTGGGGCTAAGAAGAAGTCTGCCTCAAAGAGAGGT
GGATCTGCCAAGAAGGGGAAGAACAAAGGAGGAGGAGGCTGGGGAGGAGG
AGAGGCTTTCGGCAACGGCGGGGCCAAGGTAAATAACACCTCTGCGTCCG
AAGTTGGAGGTGGAGGGGGCGACAGTGACGATGAAATGGCGTTCCTAGAT
GCTCAAATCAAGACACAGCGCGCTTCCGAGCCATGCTATGCTGCGCTGCT
TAGATCTACAACGGAGGCCATGCGGGCGAAGAATCCGGCCTGGGCAAAAG
CGCAAGACAAGGAGAAACCCTCAAAATCAACTATTACGAATGCGAGGAGG
GGACAACTAGAGGGTGCACTTCAGACGCGGTTGGAGGAAGAAAACAAGAA
ACGATCCAAATCAGCAGGGAACACAGAGAAGAACTCGCGATGAATGGAAG
TGCAAGGCGTTGCGTCAGAGGGAGATACACTCGCTCTTCCCGCAGAGCTC
ACCGCCCGCCAGCGGGCACTCGTTCATGAAACCGCAGAAACACTAGGATT
GGGGCATGTTAGCCGAGGAGAAGGTCCCCTTCGACGTGCTATTCTATCGA
GGGTTGTTGGGGTAGATGCTCAACGGCGCAACGCAGAGGTTGATGCACGG
CAACTACCACGCATCGCTAGTATTGATCGTAGTGACCGTAGCACTTGTGT
TGAGACCGTCGTGAATTTCGATCTCGCCACTGCAACTGGTTTCATGGCAT
TGGGTACAGAGGACGAAGACTCGGATGCCACCGATTCCGGCGTGAGCGGT
TTGCCAGAGGAGCCGACCGCAGCCGCCGTGAACAAGGCAAGCAACTCCTG
CTCCTCAGCACCTGTTCAACACGAGGGTTCTGATTCTCCTCCGGACCCAA
ATATCCGAGTAGAGTGCACCTCTCCTGCTATTCTTTCTTCTGCTACCGCT
GCTGCCGCAAGTAGAGATACCGCCGGTAGGTTTTTACCGACCGAAAATGC
TCTCCTCAAGGATTTGCATGCTGCGCGAGCAGCCCGGCGGCCGCCGCCGC
CTCCGGCTCAGGCAAAGGGACGACAAAAGAAAGGCAAGTCGGCAGCTTCA
ACTGCGGGTGATCAAGGATTCGCCGTCGAGCTTGCCTCCGCTAATGGTGG
TGGCCGTGGTGGGGCTAAGAAGAAGTCTGCCTCAAAGAGAGGTGGATCTG
CCAAGAAGGGGAAGAACAAAGGAGGAGGAGGCTGGGGAGGAGGAGAGGCT
TTCGGCAACGGCGGGGCCAAGGTAAATAACACCTCTGCGTCCGAAGTTGG
AGGTGGAGGGGGCGACAGTGACGATGAAATGGCGTTCCTAGATGCTCAAA
TCAAGACACAGCGCGCTTCCGAGCCATGCTATGCTGCGCTGCTTAGATCT
ACAACGGAGGCCATGCGGGCGAAGAATCCGGCCTGGGCAAAAGCGCAAGA
CAAGGAGAAACCCTCAAAATCAACTATTACGAATGCGAGGAGGGGACAAC
TAGAGGGTGCACTTCAGACGCGGTTGGAGGAAGAAAACAAGAAACGATCC
AAATCAGCAGGGAACACAGAGAAGAACTCGCGATGA
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