mRNA_H-paniculata_contig277.7587.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig277.7587.1
Unique NamemRNA_H-paniculata_contig277.7587.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig277.7587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig277contigH-paniculata_contig277:8239..11928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_003810.1
Exons5
Model size939
Cds size939
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig277.7587.1prot_H-paniculata_contig277.7587.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig277 8239..11928 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929838.7171717-CDS-H-paniculata_contig277:8238..87121622929838.7171717-CDS-H-paniculata_contig277:8238..8712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig277 8239..8712 +
1691481033.5127316-CDS-H-paniculata_contig277:8238..87121691481033.5127316-CDS-H-paniculata_contig277:8238..8712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig277 8239..8712 +
1622929838.733217-CDS-H-paniculata_contig277:9349..95291622929838.733217-CDS-H-paniculata_contig277:9349..9529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig277 9350..9529 +
1691481033.5215654-CDS-H-paniculata_contig277:9349..95291691481033.5215654-CDS-H-paniculata_contig277:9349..9529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig277 9350..9529 +
1622929838.7469463-CDS-H-paniculata_contig277:9739..98281622929838.7469463-CDS-H-paniculata_contig277:9739..9828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig277 9740..9828 +
1691481033.5296621-CDS-H-paniculata_contig277:9739..98281691481033.5296621-CDS-H-paniculata_contig277:9739..9828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig277 9740..9828 +
1622929838.7665956-CDS-H-paniculata_contig277:11500..116391622929838.7665956-CDS-H-paniculata_contig277:11500..11639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig277 11501..11639 +
1691481033.5381782-CDS-H-paniculata_contig277:11500..116391691481033.5381782-CDS-H-paniculata_contig277:11500..11639Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig277 11501..11639 +
1622929838.791953-CDS-H-paniculata_contig277:11871..119281622929838.791953-CDS-H-paniculata_contig277:11871..11928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig277 11872..11928 +
1691481033.5471756-CDS-H-paniculata_contig277:11871..119281691481033.5471756-CDS-H-paniculata_contig277:11871..11928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig277 11872..11928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig277.7587.1

>prot_H-paniculata_contig277.7587.1 ID=prot_H-paniculata_contig277.7587.1|Name=mRNA_H-paniculata_contig277.7587.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=313bp
DRIKRVLRRSRTMENVRSLDADSPALIAQATRLSNLYGVSLGSELARKGV
KEGGCRRRRRRRNLGARKSLAAIGDSSDTRDRLGSVTEPTRREKRVLRRA
LEKAGEAAMQYTIEASAGMKAFDGPPLGPRDVRELLLRSFRIKLSVSEAT
ALIEHFTKDKTAESIEHGDFLHFIQRLRRDLEKHPERDEHISSFRGKKLV
PQVPKNSCGLPVIQRPGSQTVAHGLSIGNVIGALAKVERAAAAYDRRSRI
ESLRGADLTRATSPGDFAGVLLSRFDIRVSEDERKELVSLLTNKDSLVDV
ERFRAYFLELIDD
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mRNA from alignment at H-paniculata_contig277:8239..11928+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig277.7587.1 ID=mRNA_H-paniculata_contig277.7587.1|Name=mRNA_H-paniculata_contig277.7587.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3690bp|location=Sequence derived from alignment at H-paniculata_contig277:8239..11928+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAGAATCAAGCGAGTTCTGAGAAGATCTCGCACAATGGAGAACGTGCG
ATCCCTAGACGCTGACAGTCCGGCACTTATCGCACAGGCAACTCGTCTAT
CGAACCTCTACGGGGTTAGTCTAGGGTCCGAGCTCGCAAGGAAGGGGGTC
AAAGAAGGGGGGTGTAGGAGACGTCGAAGACGACGAAACTTAGGCGCACG
TAAATCATTGGCCGCCATTGGTGATTCGTCGGACACTCGCGACAGGTTAG
GAAGTGTGACAGAACCAACGCGTCGAGAGAAACGGGTCTTGCGACGCGCG
CTTGAAAAAGCCGGCGAAGCCGCAATGCAGTACACAATCGAGGCTTCTGC
GGGAATGAAGGCGTTCGATGGGCCACCTTTGGGACCAAGAGACGTTAGAG
AATTACTGCTACGGAGTTTTCGCATAAAATTATCTGTTTCGGAGGCTACC
GCGTTAATTGAACATTTTACCAAGGTGACGATGGGTGGTGCTGCCCGACG
TAAAGGAGAGAGGTGTACACAGCAACATTTTGGTGTAGAGCTGTACTATA
GTACATACAGGCTCAATAGTGCTCCGCGCAGACTTTGGATCGCGCTGCCG
CGTGCTGTCATAAGGAAGCAACATATTTTTGTTTCGAACCAGGCGCAATA
AGATTTTGGCTACGGTAGTTAGCTCTTGCCATAACTTGATATATGGGTCT
TCTATGTTCGTTTTTGTCTAATGTCCACCGCGATGAGAAACCTGACAACC
CCATCGGGAACGGAGCACTTGTCAGAAACTCCAGCACTCCAACAAGAATA
ACGAGCCCCGGGGCCATTTTCGTTGTTTCACGCGGTGATACGAACCATAT
CCCTCCCCGTAGGTCCGGTTAACGGAGAATGTACGTAAGTCCGTGTTGGC
GCGTCGCCTTGGAGGGGACCTGAATTTCCCTGTCGTTGCACCTGATTAGT
TAACTTAAAACGTGATTTCACGACGCTGGAATGATCCGTGAAACCCTCAC
ATCAATAGCATGGCAACAAAGCGTTTCGAAGCGGAATCTACAATATTCGT
ACATTGCTGTTGCCCATCAACCCTCACCGGTCCATGTTCACAACGCGCTC
CTCTTCAAAAGGATAAGACGGCGGAGAGCATCGAACACGGTGATTTCCTT
CATTTCATCCAGCGCTTGAGGCGGGATCTGGAAAAGCATCCTGAAAGAGA
TGAGCATATCTCCTCCTTCCGCGGAAAAAAGCTTGTTCCTCAGGTGCCCA
AGAATTCGTGTGGGCTCCCCGTAATACAGAGACCAGGCAGTGTATCATGC
CATGAGCCAACTTAGCTGTTTCTCTGTACAACTTTGTGGTGAATGAAAGA
ATGTATTGTAGGCTTCAGATTGGATGTGCGAAGGGGGGAACATATGCTGT
TTCAGGATCTTCAACTCACTTCAAGTTGCGATACTGGCAAAGTGCTGTAG
TATAAAGTACGTGTTTTTTGTGCTCACTTGGAATGATGGTGGTTATCGCA
GCAAACCGTTGCGCATGGACTAAGCATTGGAAACGTCATAGGAGCTCTGG
CGAAAGTTGAAAGGGCGGCTGCTGCGTACGACCGACGGAGGTACGTACAC
ATCGTACTTGGGGTAGTCTATTTGCGAAACACAGCTATATAATGTATTCT
ACAGAGATAAATCGACGTACATGTCTTCGTCTAGATACTCGTTTTCGTCT
CGATAATCAAGAAACTCTCAACGCTTTTGTTCAAGAGTCGACGTCTCCAA
AATGGTTCTCCTGTTTTTCAGGGTGATAGTTCGAAAGTGACAGCTCCTCT
TTTCCCTGAAGTTGTTGATTTCCATTTTTGACTACACCGGGCCGTTTTCC
CTACTTTCCTCGACAATTGCACACACACTATAGTCACGACATGGAGACAT
TGTCGGTGTATGATGTGTATTTCATCCATTCGCTTTCTCCTTCTCACGGT
GTCTTTCCGATGAATTTCGCAGATAAAGTTGCCGGTATAAAGGGTAAAGG
TAGGCTACTGATAAAGAGCTTTCATAAAAATCGAAGTATCGGCGTCCAAT
GTCCTAGCAAAGCGAGCACCACACTCATAGTGCAATACCACAATCGTAAT
ATAGTTGGAAATGGGAAAAACTATGCGTTCACGAAGGTAGGGGAGGCGTT
GCTAATAATCCGGCGACGCTTCGGATACTGGGTGTCGCGGACACCTTCGG
ACGTGCCGCCGACACTTCTGACAGGCGGTAGTGTCGTGGACAGTTTCAGG
GGGTACCGGGGGTATTACTGACACACTCAACAATGTGGCTGACACATTCG
ATGATGTCGCCGAATTGATAGAGGAGTGCAGCGTCATGAAAAATATTCAC
AGGCCAGGATCTGCCCCTGAATGGATCGGACTCAATCCGTCCAATCGGGT
GCAATCCGCGGCTCCCACGATCGCCTCGATCGGCCTCTCTACGGACCTAC
CCGTACATATCAGTTCTCGCTGAGTTGTCACGCCGGTTCCGTGTGTTTTC
AATTGTATATGCAGCTTTAATGCCAACAACCCACCTAACACAAGCGACAG
GCGGTAATTTCAAGGCAGTTTGATGGCTACTCGTATTCTATAGGCCATCA
AAGTTCAAGGTATACGCTACATATTGAGAATATTACGTACTATATCGCAG
TATTACTTTATAAGACCGAACCACACATGCACACAAAATCAGGTTAAAAG
GTGTCGCCGACACTTCCTATATTGCTGTGGACACTTTCGAGAATGCCAGC
GAATTTGTCAGCAAACGTGTCGCCGAACTGTTGGGGTTATCGTCGTCACT
TTCACCACAGTTCTGGGTTCCGGGGGTGCCGCCGCAATTGCGGATATATT
GGCGCCACTTTCTCTATTGTTGCCTAGACTTCGGAAAGCCTCCACATTAT
TTTTTCAAGCCTCAGCAAATGTGTCTGCAACCTTCACTCGGGCTGTCGGG
AGCACTCTCGTGGGTGTCGGTAACACTTCCGCGGGTATCGACGACAACAA
CTCTGTGTACTCATCATGTATTTCGTAATGTGCCGGTCATGTTTGAGAAG
TATTTTGGCGATTGGTTATGCGACAGTCTACGACAGCACAAACCAATATC
TCCTCCACTTTCCGAGATGTCAACAGTTCGAAAAGTGTCGCCAGATTGGT
CTATTGATACACTTCGAATTGTTTGTGTCTGTCTTGATATTTTCAACCAC
GGCTTTACAATCCTCGCCCTGCTCTCCCCACCCCCCCGGCCCTCCCCAAA
TGCACATTGAAGCAGGATCGAGAGCCTTCGTGGAGCGGATCTCACCCGCG
CCACTTCACCGGGCGATTTTGCTGGTGTACTTCTTAGTCGGTTTGATATC
AGAGTCAGCGAGGATGAGCGGAAGGAGCTAGTTTCTCTCCTGACAAACAA
GGTTTGTTGGTTGTCGTCAAGCGATAAAGGAAGAGGAGCGCACCGATTCA
TCCTGGAGTCGAATATAGATAAGCTTGACGAGACAACAGCAAGGCCTGCA
CCCTGGTTAATTCTTCCCTTCGCAATGATAAACCCCTGGGCTTATCAAAT
ACCGTCGCTATTCGCACATTCCATGACGAATACTTCTAACCGTCGTCCTG
CCACGCGTCGTGCTTATCGAAACCAACCGGCAGGATAGCCTCGTAGACGT
CGAGCGCTTTCGCGCATATTTCTTGGAACTCATCGATGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig277:8239..11928+

>mRNA_H-paniculata_contig277.7587.1 ID=mRNA_H-paniculata_contig277.7587.1|Name=mRNA_H-paniculata_contig277.7587.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1878bp|location=Sequence derived from alignment at H-paniculata_contig277:8239..11928+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAGAATCAAGCGAGTTCTGAGAAGATCTCGCACAATGGAGAACGTGCG
ATCCCTAGACGCTGACAGTCCGGCACTTATCGCACAGGCAACTCGTCTAT
CGAACCTCTACGGGGTTAGTCTAGGGTCCGAGCTCGCAAGGAAGGGGGTC
AAAGAAGGGGGGTGTAGGAGACGTCGAAGACGACGAAACTTAGGCGCACG
TAAATCATTGGCCGCCATTGGTGATTCGTCGGACACTCGCGACAGGTTAG
GAAGTGTGACAGAACCAACGCGTCGAGAGAAACGGGTCTTGCGACGCGCG
CTTGAAAAAGCCGGCGAAGCCGCAATGCAGTACACAATCGAGGCTTCTGC
GGGAATGAAGGCGTTCGATGGGCCACCTTTGGGACCAAGAGACGTTAGAG
AATTACTGCTACGGAGTTTTCGCATAAAATTATCTGTTTCGGAGGCTACC
GCGTTAATTGAACATTTTACCAAGGACAGAATCAAGCGAGTTCTGAGAAG
ATCTCGCACAATGGAGAACGTGCGATCCCTAGACGCTGACAGTCCGGCAC
TTATCGCACAGGCAACTCGTCTATCGAACCTCTACGGGGTTAGTCTAGGG
TCCGAGCTCGCAAGGAAGGGGGTCAAAGAAGGGGGGTGTAGGAGACGTCG
AAGACGACGAAACTTAGGCGCACGTAAATCATTGGCCGCCATTGGTGATT
CGTCGGACACTCGCGACAGGTTAGGAAGTGTGACAGAACCAACGCGTCGA
GAGAAACGGGTCTTGCGACGCGCGCTTGAAAAAGCCGGCGAAGCCGCAAT
GCAGTACACAATCGAGGCTTCTGCGGGAATGAAGGCGTTCGATGGGCCAC
CTTTGGGACCAAGAGACGTTAGAGAATTACTGCTACGGAGTTTTCGCATA
AAATTATCTGTTTCGGAGGCTACCGCGTTAATTGAACATTTTACCAAGGA
TAAGACGGCGGAGAGCATCGAACACGGTGATTTCCTTCATTTCATCCAGC
GCTTGAGGCGGGATCTGGAAAAGCATCCTGAAAGAGATGAGCATATCTCC
TCCTTCCGCGGAAAAAAGCTTGTTCCTCAGGTGCCCAAGAATTCGTGTGG
GCTCCCCGTAATACAGAGACCAGGCAGTGATAAGACGGCGGAGAGCATCG
AACACGGTGATTTCCTTCATTTCATCCAGCGCTTGAGGCGGGATCTGGAA
AAGCATCCTGAAAGAGATGAGCATATCTCCTCCTTCCGCGGAAAAAAGCT
TGTTCCTCAGGTGCCCAAGAATTCGTGTGGGCTCCCCGTAATACAGAGAC
CAGGCAGTCAAACCGTTGCGCATGGACTAAGCATTGGAAACGTCATAGGA
GCTCTGGCGAAAGTTGAAAGGGCGGCTGCTGCGTACGACCGACGGAGCAA
ACCGTTGCGCATGGACTAAGCATTGGAAACGTCATAGGAGCTCTGGCGAA
AGTTGAAAGGGCGGCTGCTGCGTACGACCGACGGAGCAGGATCGAGAGCC
TTCGTGGAGCGGATCTCACCCGCGCCACTTCACCGGGCGATTTTGCTGGT
GTACTTCTTAGTCGGTTTGATATCAGAGTCAGCGAGGATGAGCGGAAGGA
GCTAGTTTCTCTCCTGACAAACAAGCAGGATCGAGAGCCTTCGTGGAGCG
GATCTCACCCGCGCCACTTCACCGGGCGATTTTGCTGGTGTACTTCTTAG
TCGGTTTGATATCAGAGTCAGCGAGGATGAGCGGAAGGAGCTAGTTTCTC
TCCTGACAAACAAGGATAGCCTCGTAGACGTCGAGCGCTTTCGCGCATAT
TTCTTGGAACTCATCGATGACGATAGCCTCGTAGACGTCGAGCGCTTTCG
CGCATATTTCTTGGAACTCATCGATGAC
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