mRNA_H-paniculata_contig27690.7585.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27690.7585.1
Unique NamemRNA_H-paniculata_contig27690.7585.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig27690.7585.1 vs. uniprot
Match: A0A8H4NHH2_9HYPO (Uncharacterized protein n=1 Tax=Fusarium acutatum TaxID=78861 RepID=A0A8H4NHH2_9HYPO)

HSP 1 Score: 57.4 bits (137), Expect = 5.990e-7
Identity = 40/118 (33.90%), Postives = 61/118 (51.69%), Query Frame = 1
Query:   61 HSAIHRAVIEDDIGVVMTWLRENPGINPDVVDHNGKSALYIACLY---GHSSIARVMLRAGADVNLKCGPGGLTSIH---AAACH----W---GKLRQLVEAGTDLSMRTTEG-LPVH 372
            H  +H A     + ++   L+   G NPDV D  G +A+++AC+      + I  V+L++GAD NLK    G T IH    A+C+    W   GKL  L++ G D++ R   G  P+H
Sbjct:   65 HPHLHLAAFYGWVDIIEALLKL--GSNPDVQDSKGLTAMHVACVSVEEDSTEIVDVLLKSGADPNLKADATGFTPIHHLIEASCNAAEPWDCNGKLDTLLKGGADMNARDKSGRTPIH 180          
BLAST of mRNA_H-paniculata_contig27690.7585.1 vs. uniprot
Match: A0A8H5WI59_GIBCI (Uncharacterized protein n=1 Tax=Gibberella circinata TaxID=48490 RepID=A0A8H5WI59_GIBCI)

HSP 1 Score: 56.2 bits (134), Expect = 1.520e-6
Identity = 40/114 (35.09%), Postives = 56/114 (49.12%), Query Frame = 1
Query:   58 THSAIHRAVIEDDIGVVMTWLRENPGINPDVVDHNGKSALYIACLYGH---SSIARVMLRAGADVNLKCGPGGLTSIH---AAACH----W---GKLRQLVEAGTDLSMRTTEG 360
            +HS +H A     + ++   L  N G NPDV D  G +AL++AC       + I  V+L+ GAD NLK    G   IH    A+C+    W   GKL  L++ G D+  R   G
Sbjct:   64 SHSHLHLAAFYGWVDIIKALL--NLGSNPDVQDSKGLTALHVACASVEEDTAEIVEVLLKNGADPNLKADATGFAPIHHLIEASCNAAEPWDCNGKLEVLLKGGDDIDSRDKHG 175          
BLAST of mRNA_H-paniculata_contig27690.7585.1 vs. uniprot
Match: A0A8H5L2I8_GIBSU (Uncharacterized protein n=1 Tax=Gibberella subglutinans TaxID=42677 RepID=A0A8H5L2I8_GIBSU)

HSP 1 Score: 55.8 bits (133), Expect = 2.070e-6
Identity = 40/119 (33.61%), Postives = 58/119 (48.74%), Query Frame = 1
Query:   58 THSAIHRAVIEDDIGVVMTWLRENPGINPDVVDHNGKSALYIACLYGH---SSIARVMLRAGADVNLKCGPGGLTSIH---AAACH----W---GKLRQLVEAGTDLSMRTTEG-LPVH 372
            +HS +H A     + ++   L  N G NPDV D  G +AL+ AC  G    + +  V+L+ GAD NLK        IH    A+C+    W   GK   L++ G D++ R   G  P+H
Sbjct:   64 SHSHLHLAAFYGWVDIIQDLL--NLGSNPDVQDSKGLTALHAACASGEEGTAEVVEVLLKNGADPNLKADATEFAPIHHLIEASCNAAEPWDCNGKWEALLKGGADINSRDKHGRAPIH 180          
BLAST of mRNA_H-paniculata_contig27690.7585.1 vs. uniprot
Match: A0A7S4G9I4_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4G9I4_9EUGL)

HSP 1 Score: 53.5 bits (127), Expect = 1.450e-5
Identity = 34/98 (34.69%), Postives = 53/98 (54.08%), Query Frame = 1
Query:  133 GINPDVVDHNGKSALYIACLYGHSSIARVMLRAGADVNLKCGPGGLTSIHAAACHWGKL-------RQLVEAGTDLSMRTTEGLPVHDYAVLADSPAV 405
            GI     +  G++AL+IACL+G +  A++++ AGAD N K G GG T +H  A   G +       + +V AG DL +   EG+   +  V  + PA+
Sbjct:  380 GIPVQFANRMGQTALHIACLWGCTLSAQILMAAGADANQKNGLGGETPVHMLARGRGPIAKRLNCAKAVVAAGADLGVPNEEGVRPFEM-VSGEDPAL 476          
BLAST of mRNA_H-paniculata_contig27690.7585.1 vs. uniprot
Match: A0A8I6RSP9_CIMLE (Non-specific serine/threonine protein kinase n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6RSP9_CIMLE)

HSP 1 Score: 53.5 bits (127), Expect = 1.670e-5
Identity = 35/108 (32.41%), Postives = 56/108 (51.85%), Query Frame = 1
Query:   70 IHRAVIEDDIGVVMTWLRENPGINPDVVDHNGKSALYIACLYGHSSIARVMLRAGADVNLKCGPGG--LTSIHAAACHW--GKLRQLVEAGTDLSMRTTEGLPVHDYA 381
            +H++ + D+  ++   LR +   N +  D  G++ L+ A     S+  RV+L+AGAD N+ CGP G   T +H  A H     ++ LV+ G DL  +   GL   D A
Sbjct:   16 LHQSALWDNAELLEDLLRGDQLNNMNSQDSWGRTPLHAAATTESSTCLRVLLQAGADPNIPCGPRGENKTPLHVCAEHGFVNNIQLLVQHGADLMAKEANGLTALDLA 123          
BLAST of mRNA_H-paniculata_contig27690.7585.1 vs. uniprot
Match: A0A8H4SRX7_9HYPO (Uncharacterized protein n=1 Tax=Fusarium gaditjirri TaxID=282569 RepID=A0A8H4SRX7_9HYPO)

HSP 1 Score: 52.8 bits (125), Expect = 2.450e-5
Identity = 35/94 (37.23%), Postives = 48/94 (51.06%), Query Frame = 1
Query:  133 GINPDVVDHNGKSALYIACL---YGHSSIARVMLRAGADVNLKCGPGGLTSIHA--AACH-----W---GKLRQLVEAGTDLSMRTTEG-LPVH 372
            G NPDV D  G +AL++AC       + I +V+L+ GAD NLK    G   +H    AC      W   GK+  LV AG D+++R      P+H
Sbjct:   87 GSNPDVQDRKGTTALHVACTSLEVDSTEIVQVLLKEGADPNLKVEATGFAPLHQLITACRIAAEPWDSNGKIEALVNAGADINIRDKHHRTPIH 180          
BLAST of mRNA_H-paniculata_contig27690.7585.1 vs. uniprot
Match: UPI0006D4EC92 (leucine-rich repeat serine/threonine-protein kinase 1 isoform X1 n=3 Tax=Halyomorpha halys TaxID=286706 RepID=UPI0006D4EC92)

HSP 1 Score: 51.6 bits (122), Expect = 7.780e-5
Identity = 33/108 (30.56%), Postives = 56/108 (51.85%), Query Frame = 1
Query:   70 IHRAVIEDDIGVVMTWLRENPGINPDVVDHNGKSALYIACLYGHSSIARVMLRAGADVNLKCGPGG--LTSIHAAACHW--GKLRQLVEAGTDLSMRTTEGLPVHDYA 381
            +H++ + D+  ++   LR +   N +  D  G++ L+ A    +S+  R++L+AGAD N+ CGP G   T +H  + H     +  LV+ G DL  +   GL   D A
Sbjct:   19 LHQSALWDNAELLEDLLRGDQLSNMNSQDSWGRTPLHAAATTENSTCLRILLQAGADPNIPCGPRGDSRTPLHVCSEHGFVNNIILLVQNGADLMAKDANGLTALDIA 126          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27690.7585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A8H4NHH2_9HYPO5.990e-733.90Uncharacterized protein n=1 Tax=Fusarium acutatum ... [more]
A0A8H5WI59_GIBCI1.520e-635.09Uncharacterized protein n=1 Tax=Gibberella circina... [more]
A0A8H5L2I8_GIBSU2.070e-633.61Uncharacterized protein n=1 Tax=Gibberella subglut... [more]
A0A7S4G9I4_9EUGL1.450e-534.69Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A8I6RSP9_CIMLE1.670e-532.41Non-specific serine/threonine protein kinase n=1 T... [more]
A0A8H4SRX7_9HYPO2.450e-537.23Uncharacterized protein n=1 Tax=Fusarium gaditjirr... [more]
UPI0006D4EC927.780e-530.56leucine-rich repeat serine/threonine-protein kinas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27690contigH-paniculata_contig27690:1975..2391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score60.1
Seed ortholog evalue9.6e-07
Seed eggNOG ortholog946362.XP_004991547.1
Preferred nameANKRD55
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule binding
EggNOG OGs38HKC@33154,COG0666@1,COG5244@1,KOG0504@2759,KOG4568@2759
COG Functional cat.D
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size417
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929838.4076245-CDS-H-paniculata_contig27690:1974..23911622929838.4076245-CDS-H-paniculata_contig27690:1974..2391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27690 1975..2391 +
1691481033.3934264-CDS-H-paniculata_contig27690:1974..23911691481033.3934264-CDS-H-paniculata_contig27690:1974..2391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27690 1975..2391 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27690.7585.1prot_H-paniculata_contig27690.7585.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27690 1975..2391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27690.7585.1

>prot_H-paniculata_contig27690.7585.1 ID=prot_H-paniculata_contig27690.7585.1|Name=mRNA_H-paniculata_contig27690.7585.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
APIYYLNPSFLGKLSMAMTTHSAIHRAVIEDDIGVVMTWLRENPGINPDV
VDHNGKSALYIACLYGHSSIARVMLRAGADVNLKCGPGGLTSIHAAACHW
GKLRQLVEAGTDLSMRTTEGLPVHDYAVLADSPAVIPT*
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mRNA from alignment at H-paniculata_contig27690:1975..2391+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27690.7585.1 ID=mRNA_H-paniculata_contig27690.7585.1|Name=mRNA_H-paniculata_contig27690.7585.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=417bp|location=Sequence derived from alignment at H-paniculata_contig27690:1975..2391+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCCCCATCTATTACCTAAATCCTTCCTTCTTAGGCAAGCTAAGTATGGC GATGACTACACATTCGGCGATCCATAGGGCGGTGATCGAGGACGATATAG GCGTGGTTATGACGTGGCTGCGCGAAAACCCTGGCATCAACCCCGATGTG GTCGACCACAACGGGAAAAGTGCACTTTACATCGCCTGCCTTTATGGACA CTCTAGCATTGCAAGGGTGATGCTCAGGGCAGGGGCTGACGTTAACCTTA AGTGTGGGCCGGGAGGTTTGACATCTATTCATGCAGCTGCTTGTCACTGG GGAAAGCTACGACAGCTGGTTGAAGCTGGTACGGATCTCTCCATGAGGAC GACGGAGGGCTTGCCCGTTCACGACTACGCGGTACTAGCGGACTCTCCAG CAGTTATCCCGACATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig27690:1975..2391+

>mRNA_H-paniculata_contig27690.7585.1 ID=mRNA_H-paniculata_contig27690.7585.1|Name=mRNA_H-paniculata_contig27690.7585.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig27690:1975..2391+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCCCCATCTATTACCTAAATCCTTCCTTCTTAGGCAAGCTAAGTATGGC
GATGACTACACATTCGGCGATCCATAGGGCGGTGATCGAGGACGATATAG
GCGTGGTTATGACGTGGCTGCGCGAAAACCCTGGCATCAACCCCGATGTG
GTCGACCACAACGGGAAAAGTGCACTTTACATCGCCTGCCTTTATGGACA
CTCTAGCATTGCAAGGGTGATGCTCAGGGCAGGGGCTGACGTTAACCTTA
AGTGTGGGCCGGGAGGTTTGACATCTATTCATGCAGCTGCTTGTCACTGG
GGAAAGCTACGACAGCTGGTTGAAGCTGGTACGGATCTCTCCATGAGGAC
GACGGAGGGCTTGCCCGTTCACGACTACGCGGTACTAGCGGACTCTCCAG
CAGTTATCCCGACATGAGCCCCCATCTATTACCTAAATCCTTCCTTCTTA
GGCAAGCTAAGTATGGCGATGACTACACATTCGGCGATCCATAGGGCGGT
GATCGAGGACGATATAGGCGTGGTTATGACGTGGCTGCGCGAAAACCCTG
GCATCAACCCCGATGTGGTCGACCACAACGGGAAAAGTGCACTTTACATC
GCCTGCCTTTATGGACACTCTAGCATTGCAAGGGTGATGCTCAGGGCAGG
GGCTGACGTTAACCTTAAGTGTGGGCCGGGAGGTTTGACATCTATTCATG
CAGCTGCTTGTCACTGGGGAAAGCTACGACAGCTGGTTGAAGCTGGTACG
GATCTCTCCATGAGGACGACGGAGGGCTTGCCCGTTCACGACTACGCGGT
ACTAGCGGACTCTCCAGCAGTTATCCCGACATGA
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