mRNA_H-paniculata_contig11184.758.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig11184.758.1 vs. uniprot
Match: A0A6H5JXS4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXS4_9PHAE) HSP 1 Score: 171 bits (432), Expect = 3.550e-48 Identity = 92/202 (45.54%), Postives = 122/202 (60.40%), Query Frame = 1 Query: 1 PTKQRTYHRNSSITAKVQIESDELLAANILNPSNSNWTSPLGVVAKYDGGIRLMCKYKSVERRFFCSVLPLPSTDEMLDTLGGLDTFSVLDAASGFWQCTMDKDSISLTAVCTQSGLYEWLQMPMGTSGSPGAFQRFVEEVCKGLQRVQLCLHGIIFHSYSTQCHVADLKPSLERLTTDVLKLPPKKAHIDAPEAPLEGHLI 606 P KQR Y + I KVQIE D+LL A +L S SNW SPL VVAK +GG+RL YK V + LP+P +++L L FS LD SGF+QC +++DSI +TAV T +GLYE++ MP G S SPG F ++ VC GL+RV+L + +I +S + HV DL+ ER+T LKL PKKA + GH + Sbjct: 112 PVKQRPYRYSPIINEKVQIEIDKLLLAGVLRRSYSNWASPLVVVAKANGGVRLTVNYKKVNQMSVIPKLPIPVVEDILADLKSAKIFSTLDLISGFFQCCIEEDSIPITAVITATGLYEFMAMPQGLSSSPGWFHSVMQRVCDGLERVRLFIDDVIVYSRNGAEHVQDLEKFFERMTKFNLKLAPKKAQLGVKVVTFLGHQV 313
BLAST of mRNA_H-paniculata_contig11184.758.1 vs. uniprot
Match: A0A6H5KLE7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLE7_9PHAE) HSP 1 Score: 171 bits (432), Expect = 6.010e-48 Identity = 92/202 (45.54%), Postives = 122/202 (60.40%), Query Frame = 1 Query: 1 PTKQRTYHRNSSITAKVQIESDELLAANILNPSNSNWTSPLGVVAKYDGGIRLMCKYKSVERRFFCSVLPLPSTDEMLDTLGGLDTFSVLDAASGFWQCTMDKDSISLTAVCTQSGLYEWLQMPMGTSGSPGAFQRFVEEVCKGLQRVQLCLHGIIFHSYSTQCHVADLKPSLERLTTDVLKLPPKKAHIDAPEAPLEGHLI 606 P KQR Y + I KVQIE D+LL A +L S SNW SPL VVAK +GG+RL YK V + LP+P +++L L FS LD SGF+QC +++DSI +TAV T +GLYE++ MP G S SPG F ++ VC GL+RV+L + +I +S + HV DL+ ER+T LKL PKKA + GH + Sbjct: 133 PVKQRPYRYSPIINEKVQIEIDKLLLAGVLRRSYSNWASPLVVVAKANGGVRLTVNYKKVNQMSVIPKLPIPVVEDILADLKSAKIFSTLDLISGFFQCCIEEDSIPITAVITATGLYEFMAMPQGLSSSPGWFHSVMQRVCDGLERVRLFIDDVIVYSRNGAEHVQDLEKFFERMTKFNLKLAPKKAQLGVKVVTFLGHQV 334
BLAST of mRNA_H-paniculata_contig11184.758.1 vs. uniprot
Match: A0A6H5KIC8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIC8_9PHAE) HSP 1 Score: 155 bits (393), Expect = 9.080e-42 Identity = 84/202 (41.58%), Postives = 117/202 (57.92%), Query Frame = 1 Query: 1 PTKQRTYHRNSSITAKVQIESDELLAANILNPSNSNWTSPLGVVAKYDGGIRLMCKYKSVERRFFCSVLPLPSTDEMLDTLGGLDTFSVLDAASGFWQCTMDKDSISLTAVCTQSGLYEWLQMPMGTSGSPGAFQRFVEEVCKGLQRVQLCLHGIIFHSYSTQCHVADLKPSLERLTTDVLKLPPKKAHIDAPEAPLEGHLI 606 P +Q+ Y + + KVQIE D+LL A +L S SNW SPL VVAK +GG+RL Y + + LP+P +++L L FS LD SGF+QC+++KDSI +TAV T +GLYE+L + G S SPG F + VC GL+RV++ + +I S HV DL+ ER+ LKL PKK ++ GH + Sbjct: 163 PVRQKPYRYSPVMNEKVQIEVDKLLLAGVLRRSYSNWASPLVVVAKANGGVRLTVNYNRINKISVIPTLPIPIVEDILAELDESKIFSTLDLVSGFFQCSIEKDSIPITAVITPTGLYEFLSVLQGLSSSPGWFHSVMARVCDGLERVRVFIDDVIVFSRDEAEHVRDLERFFERMVKFNLKLAPKKTNLGVKVVTFLGHQV 364
BLAST of mRNA_H-paniculata_contig11184.758.1 vs. uniprot
Match: A0A6H5KQF4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQF4_9PHAE) HSP 1 Score: 147 bits (372), Expect = 7.800e-40 Identity = 80/183 (43.72%), Postives = 109/183 (59.56%), Query Frame = 1 Query: 1 PTKQRTYHRNSSITAKVQIESDELLAANILNPSNSNWTSPLGVVAKYDGGIRLMCKYKSVERRFFCSVLPLPSTDEMLDTLGGLDTFSVLDAASGFWQCTMDKDSISLTAVCTQSGLYEWLQMPMGTSGSPGAFQRFVEEVCKGLQRVQLCLHGIIFHSYSTQCHVADLKPSLERLTTDVLKL 549 P +QR Y + + VQIE D+LL A +L S SNW SPL VVAK +GG+RL YK + + LP+ +++L L FS LD SGF+QC++++DSI +TAV T +GLYE+L +P G S SPG F + VC GL+RV+L + +I S HV DL+ ER+ LKL Sbjct: 89 PVRQRPYRYSPVMKENVQIEIDKLLLAGVLRRSYSNWASPLVVVAKANGGVRLTVNYKRINKMSVIPTLPIRIVEDILAELDKSKIFSTLDLVSGFFQCSIEEDSIPITAVITSTGLYEFLSVPQGLSSSPGWFHSVMARVCGGLERVRLFIDDVIVFSRDGAEHVRDLERFFERMVKFNLKL 271
BLAST of mRNA_H-paniculata_contig11184.758.1 vs. uniprot
Match: A0A6H5JUZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ4_9PHAE) HSP 1 Score: 150 bits (380), Expect = 6.660e-38 Identity = 94/248 (37.90%), Postives = 133/248 (53.63%), Query Frame = 1 Query: 1 PTKQRTYHRNSSITAKVQIESDELLAANILNPSNSNWTSPLGVVAKYDGGIRLMCKYKSVERRFFCSVLPLPSTDEMLDTLGGLDTFSVLDAASGFWQCTMDKDSISLTAVCTQSGLYEWLQMPMGTSGSPGAFQRFVEEVCKGLQRVQLCLHGIIFHSYSTQCHVADLKPSLERLTTDVLKLPPKKAHIDAPEAPLEGHLIAPPCFFGSHKDERITEHTDSLSPR--RKLRSLLRNVSYLRKFLQDL 738 P R Y N + +V D+ LAA ++ S S ++SPL V+ K GG+R+ Y+ + + S LP+P D+ LD L +S+ D S F Q T+ +D+I LTA T SGL+EWL+MP G+S +PG F + V EV K L V L +I + HV ++ ERL T LKL P KA + A EA GH I+P + ++ T PR ++LRSLL +SY RKFL ++ Sbjct: 272 PVTSRPYRVNPPVAKQVDAILDQYLAAGLIQHSTSPYSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTSSGLFEWLKMPQGSSAAPGWFCKVVNEVIKNLHGVASYLDDLIVFDDNPASHVDTMRALFERLRTHNLKLTPPKATVGATEADFLGHTISPDGVRPN--GAKVAALTKMPMPRDVKQLRSLLGGLSYYRKFLPNM 517
BLAST of mRNA_H-paniculata_contig11184.758.1 vs. uniprot
Match: A0A6H5K4H4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H4_9PHAE) HSP 1 Score: 149 bits (375), Expect = 3.110e-37 Identity = 91/246 (36.99%), Postives = 123/246 (50.00%), Query Frame = 1 Query: 1 PTKQRTYHRNSSITAKVQIESDELLAANILNPSNSNWTSPLGVVAKYDGGIRLMCKYKSVERRFFCSVLPLPSTDEMLDTLGGLDTFSVLDAASGFWQCTMDKDSISLTAVCTQSGLYEWLQMPMGTSGSPGAFQRFVEEVCKGLQRVQLCLHGIIFHSYSTQCHVADLKPSLERLTTDVLKLPPKKAHIDAPEAPLEGHLIAPPCFFGSHKDERITEHTDSLSPRRKLRSLLRNVSYLRKFLQDL 738 P R Y N + KV D+ LAA ++ S S W SPL V+ K DG +R+ YK + PLP D +LD+L FS+ D S F Q D+D++ LTA CT + L+EWL+MP G + SP F + V + GL+RV LH +I HV +L +RL LKL P K + A A GH I+P R H + ++LRSLL +SY RKFL++L Sbjct: 886 PVASRPYRINPLMQKKVDAVLDQYLAAGLIQHSTSPWASPLVVIPKKDGSVRITVNYKRLNALVDLDGQPLPRVDGILDSLYTGKVFSIFDLNSAFHQIVCDEDTVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVVNRLVHGLERVLAYLHDVICFDEEPLGHVLNLIEFFKRLRQYNLKLSPGKGRVGATHANFLGHTISPAGVSPDGVKVRALTHMPPPTNVKQLRSLLGGLSYYRKFLKNL 1131
BLAST of mRNA_H-paniculata_contig11184.758.1 vs. uniprot
Match: A0A6H5JFL9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL9_9PHAE) HSP 1 Score: 148 bits (374), Expect = 3.570e-37 Identity = 94/245 (38.37%), Postives = 131/245 (53.47%), Query Frame = 1 Query: 1 PTKQRTYHRNSSITAKVQIESDELLAANILNPSNSNWTSPLGVVAKYDGGIRLMCKYKSVERRFFCSVLPLPSTDEMLDTLGGLDTFSVLDAASGFWQCTMDKDSISLTAVCTQSGLYEWLQMPMGTSGSPGAFQRFVEEVCKGLQRVQLCLHGIIFHSYSTQCHVADLKPSLERLTTDVLKLPPKKAHIDAPEAPLEGHLIAPPCFFGSHKDERITEHTDSLSPR--RKLRSLLRNVSYLRKFL 729 P R Y N + +V D+ LAA ++ S S ++SPL V+ K GG+R+ Y+ + + S LP+P D+ LD L +S+ D S F Q T+ +D+I LTA T S L+EWL+MP G+S +PG F + V EV K L V L +I + HV ++ ERL T LKL P KA I A EA GH I+P + +++ T PR ++LRSLL +SY RKFL Sbjct: 167 PVTSRPYRVNPPVAKQVDAILDQYLAAGLIQHSTSPYSSPLVVIPKKSGGVRITVNYRKLNKLCALSQLPIPRVDDTLDKLLKGRIYSLFDMKSSFHQITVHRDTIPLTAFVTSSELFEWLKMPQGSSAAPGWFCKVVNEVIKNLHGVASYLDDLIVFDDTPATHVGTMRALFERLRTHNLKLTPPKATIGATEADFLGHTISPDGVRPN--GAKVSALTKMPMPRDVKQLRSLLGGLSYYRKFL 409
BLAST of mRNA_H-paniculata_contig11184.758.1 vs. uniprot
Match: A0A6H5K9N3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9N3_9PHAE) HSP 1 Score: 140 bits (352), Expect = 1.290e-36 Identity = 90/240 (37.50%), Postives = 129/240 (53.75%), Query Frame = 1 Query: 25 RNSSITAKVQIESDELLAANILNPSNSNWTSPLGVVAKYDGGIRLMCKYKSVERRFFCSVLPLPSTDEMLDTLGGLDTFSVLDAASGFWQCTMDKDSISLTAVCTQSGLYEWLQMPMGTSGSPGAFQRFVEEVCKGLQRVQLCLHGIIFHSYSTQCHVADLKPSLERLTTDVLKLPPKKAHIDAPEAPLEGHLIAPPCFFGSHKDERITEHTDSLSPR--RKLRSLLRNVSYLRKFLQDL 738 R S + +V D+ LAA ++ S S ++SPL V+ K GG+R+ + + +R S L +P D+ LD L +S+ D S F Q + +D+I LT T SGL+EWL+MP G+S +PG F + V+EV K L V L +I + HV ++ ERL T LKL P KA I A EA GH I+P +++ T PR ++LRSLL +SY RKFL ++ Sbjct: 18 RYSPVAKQVDAILDQYLAAGLIQHSTSPYSSPLVVIPKKSGGVRITVNFSKLNKRCALSQLWIPRVDDTLDKLLRGRVYSLFDMKSSFHQIMVHRDTIPLTVSVTSSGLFEWLKMPQGSSAAPGWFCKAVDEVIKNLHGVASYLDDLIVVDDTPATHVGTMRALFERLRTHNLKLTPPKATIGATEADFLGHTISPDGV--RLNGAKVSALTKMPMPRDVKQLRSLLGGLSYYRKFLPNM 255
BLAST of mRNA_H-paniculata_contig11184.758.1 vs. uniprot
Match: A0A6H5JVY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY6_9PHAE) HSP 1 Score: 147 bits (370), Expect = 1.490e-36 Identity = 90/246 (36.59%), Postives = 122/246 (49.59%), Query Frame = 1 Query: 1 PTKQRTYHRNSSITAKVQIESDELLAANILNPSNSNWTSPLGVVAKYDGGIRLMCKYKSVERRFFCSVLPLPSTDEMLDTLGGLDTFSVLDAASGFWQCTMDKDSISLTAVCTQSGLYEWLQMPMGTSGSPGAFQRFVEEVCKGLQRVQLCLHGIIFHSYSTQCHVADLKPSLERLTTDVLKLPPKKAHIDAPEAPLEGHLIAPPCFFGSHKDERITEHTDSLSPRRKLRSLLRNVSYLRKFLQDL 738 P Y N I KV + SD+ LAA ++ S W SPL V+ K DG +R+ YK + PLP D +LD+L FS+ D S F Q D+D++ LTA CT + L+EWL+MP G + SP F + + V GL+RV L +I HV +L +RL LKL P K + A A GH I+P R H + ++LRSLL +SY RKFL++L Sbjct: 610 PVASSPYRINPLIQKKVDVVSDQYLAAGLIQHCTSPWASPLVVIPKKDGSVRITVNYKRLNALVDLDGQPLPRVDGILDSLYTGKVFSIFDLNSAFHQIVCDEDTVPLTAFCTPTQLFEWLRMPQGANASPSWFVKVINRVVHGLERVLAYLDDVICFDEEPLGHVLNLIEFFKRLRQYNLKLSPGKGRVGATHANFLGHTISPAGVSPDGVKVRALTHMPPPTNVKQLRSLLGGLSYYRKFLKNL 855
BLAST of mRNA_H-paniculata_contig11184.758.1 vs. uniprot
Match: A0A6H5KC53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC53_9PHAE) HSP 1 Score: 140 bits (353), Expect = 2.580e-36 Identity = 72/148 (48.65%), Postives = 94/148 (63.51%), Query Frame = 1 Query: 1 PTKQRTYHRNSSITAKVQIESDELLAANILNPSNSNWTSPLGVVAKYDGGIRLMCKYKSVERRFFCSVLPLPSTDEMLDTLGGLDTFSVLDAASGFWQCTMDKDSISLTAVCTQSGLYEWLQMPMGTSGSPGAFQRFVEEVCKGLQRV 444 P KQR Y + I KVQIE D+LL A +L S SNW SPL VVAK +GG+RL YK V + LP+P +++L L FS LD SGF+QC +++DSI +TAV T +G+YE++ MP G S SPG F ++ VC GL+RV Sbjct: 196 PVKQRPYRYSPIINEKVQIEIDKLLLAGVLRRSYSNWASPLVVVAKANGGVRLTVNYKKVNQMSVIPKLPIPVVEDILADLKSAKIFSTLDLISGFFQCWIEEDSIPITAVITATGVYEFMAMPQGLSSSPGRFHSVMQRVCDGLERV 343 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11184.758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11184.758.1 >prot_H-paniculata_contig11184.758.1 ID=prot_H-paniculata_contig11184.758.1|Name=mRNA_H-paniculata_contig11184.758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=246bp PTKQRTYHRNSSITAKVQIESDELLAANILNPSNSNWTSPLGVVAKYDGGback to top mRNA from alignment at H-paniculata_contig11184:230..1202- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11184.758.1 ID=mRNA_H-paniculata_contig11184.758.1|Name=mRNA_H-paniculata_contig11184.758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=973bp|location=Sequence derived from alignment at H-paniculata_contig11184:230..1202- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11184:230..1202- >mRNA_H-paniculata_contig11184.758.1 ID=mRNA_H-paniculata_contig11184.758.1|Name=mRNA_H-paniculata_contig11184.758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1476bp|location=Sequence derived from alignment at H-paniculata_contig11184:230..1202- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |