prot_H-paniculata_contig27669.7577.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig27669.7577.1
Unique Name	prot_H-paniculata_contig27669.7577.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	86

Homology

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BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot
Match: A0A6H5L0N9_9PHAE (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N9_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 6.490e-43
Identity = 79/86 (91.86%), Postives = 84/86 (97.67%), Query Frame = 0

Query:    1 MDKLDLMGRTAEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPQNYVAVSPSRQQVASQAAMESIPLVFEPRSRFYTNPIVVLDFQ 86
            MDKLDL+GRT+EMARLFGIDFFSVLSRGSQYRVEAVMLRVLKP N+VAVSPSRQQVA QAAMESIPLVFEPRSRFYT+P+VVLDFQ
Sbjct: 2235 MDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPHNFVAVSPSRQQVAGQAAMESIPLVFEPRSRFYTSPVVVLDFQ 2320

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BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot
Match: D7G846_ECTSI (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G846_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 5.710e-42
Identity = 78/86 (90.70%), Postives = 83/86 (96.51%), Query Frame = 0

Query:    1 MDKLDLMGRTAEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPQNYVAVSPSRQQVASQAAMESIPLVFEPRSRFYTNPIVVLDFQ 86
            MDKLDL+GRT+EMARLFGIDFFSVLSRGSQYRVEAVMLRVLKP N+VAVSPSR QVA QAAMESIPLVFEPRSRFYT+P+VVLDFQ
Sbjct: 2340 MDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPHNFVAVSPSRLQVAGQAAMESIPLVFEPRSRFYTSPVVVLDFQ 2425

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BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot
Match: A0A1B6MFW8_9HEMI (DNA_pol_B domain-containing protein (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6MFW8_9HEMI)

HSP 1 Score: 122 bits (306), Expect = 9.130e-34
Identity = 58/86 (67.44%), Postives = 74/86 (86.05%), Query Frame = 0

Query:    1 MDKLDLMGRTAEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPQNYVAVSPSRQQVASQAAMESIPLVFEPRSRFYTNPIVVLDFQ 86
            M +LDL+GRT+E ARLFGI F+ VLSRGSQ+RVE+++LR++KP NYVAVSPS QQ A   A ES+PL+ EP+SRFYT+P++VLDFQ
Sbjct:   67 MQQLDLVGRTSEFARLFGIQFYEVLSRGSQFRVESMLLRLVKPLNYVAVSPSIQQRAKMRAPESLPLIMEPQSRFYTDPVIVLDFQ 152

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BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot
Match: A0A699Z3X2_HAELA (DNA polymerase (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699Z3X2_HAELA)

HSP 1 Score: 127 bits (320), Expect = 9.700e-33
Identity = 62/86 (72.09%), Postives = 74/86 (86.05%), Query Frame = 0

Query:    1 MDKLDLMGRTAEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPQNYVAVSPSRQQVASQAAMESIPLVFEPRSRFYTNPIVVLDFQ 86
            +D LDL+GRTAEMAR FGIDFFSVLSRGSQYRVE++++R+   QNYV +SPSR+QV  Q AME+IPLV EP SR YT+P+VVLDFQ
Sbjct:  163 IDTLDLVGRTAEMARAFGIDFFSVLSRGSQYRVESLLVRLAHTQNYVMLSPSREQVGGQPAMEAIPLVMEPESRMYTSPVVVLDFQ 248

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BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot
Match: A0A7R9TJ56_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TJ56_MICPS)

HSP 1 Score: 120 bits (301), Expect = 1.030e-32
Identity = 56/86 (65.12%), Postives = 74/86 (86.05%), Query Frame = 0

Query:    1 MDKLDLMGRTAEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPQNYVAVSPSRQQVASQAAMESIPLVFEPRSRFYTNPIVVLDFQ 86
            +++LDL+ RT+E AR+FGIDFFSVLSRGSQYRVE+++LR+   QNY+AVSPS++QVA Q AME +PLV EP S+ Y++P+ VLDFQ
Sbjct:   30 LEQLDLVARTSEQARIFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAVSPSKEQVARQPAMECLPLVMEPESKMYSDPVAVLDFQ 115

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BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot
Match: A0A388L7M8_CHABU (DNA polymerase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L7M8_CHABU)

HSP 1 Score: 127 bits (320), Expect = 2.110e-32
Identity = 60/86 (69.77%), Postives = 76/86 (88.37%), Query Frame = 0

Query:    1 MDKLDLMGRTAEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPQNYVAVSPSRQQVASQAAMESIPLVFEPRSRFYTNPIVVLDFQ 86
            M++LDL+ RT+E+AR+FGIDFFSV SRGSQYRVE++M+R+   QNY+ +SPSRQQVA+Q AME +PLV EP SRFYT+P+VVLDFQ
Sbjct:  198 MEQLDLVNRTSELARVFGIDFFSVFSRGSQYRVESMMVRLCHTQNYLLISPSRQQVATQPAMECLPLVMEPESRFYTSPVVVLDFQ 283

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BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot
Match: E1ZH16_CHLVA (DNA polymerase (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZH16_CHLVA)

HSP 1 Score: 127 bits (318), Expect = 3.690e-32
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = 0

Query:    1 MDKLDLMGRTAEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPQNYVAVSPSRQQVASQAAMESIPLVFEPRSRFYTNPIVVLDFQ 86
            +D+LDL+GRT EMAR FGIDFFSVLSRGSQYRVEA+M R+   QNY+ V   R+QVA QAAME+IPLV EPRSR YT+P+VVLDFQ
Sbjct:  154 LDQLDLVGRTGEMARTFGIDFFSVLSRGSQYRVEAMMARLAHTQNYLLVHAGREQVARQAAMEAIPLVMEPRSRLYTDPLVVLDFQ 239

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BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot
Match: A0A7R9YD13_9STRA (DNA polymerase zeta catalytic subunit (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD13_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.720e-32
Identity = 60/86 (69.77%), Postives = 74/86 (86.05%), Query Frame = 0

Query:    1 MDKLDLMGRTAEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPQNYVAVSPSRQQVASQAAMESIPLVFEPRSRFYTNPIVVLDFQ 86
            ++KLD++G T+EMARL GIDF SV +RGSQYRVEAVM RV+KP+N+  VSPSR QVASQ ++E IPLV EP SRFYT+P++VLDFQ
Sbjct:  192 LEKLDVLGTTSEMARLIGIDFTSVRTRGSQYRVEAVMCRVVKPRNFAVVSPSRPQVASQPSLEVIPLVMEPESRFYTDPVLVLDFQ 277

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BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot
Match: A0A5J4Y5V7_9CHLO (DNA polymerase (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y5V7_9CHLO)

HSP 1 Score: 126 bits (316), Expect = 7.360e-32
Identity = 57/86 (66.28%), Postives = 78/86 (90.70%), Query Frame = 0

Query:    1 MDKLDLMGRTAEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPQNYVAVSPSRQQVASQAAMESIPLVFEPRSRFYTNPIVVLDFQ 86
            +++LDL+GRTAE+AR FGIDFFSVLSRGSQYRVE++M+R+   QNY+ +SP+++QVA+Q AME++PL+ EP SRFYT+P++VLDFQ
Sbjct:  183 LEQLDLIGRTAELARAFGIDFFSVLSRGSQYRVESMMVRLAHTQNYLMLSPAKEQVANQPAMEAVPLILEPESRFYTDPVLVLDFQ 268

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BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot
Match: A0A2G5F0S8_AQUCA (DNA polymerase n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5F0S8_AQUCA)

HSP 1 Score: 125 bits (315), Expect = 1.020e-31
Identity = 58/86 (67.44%), Postives = 76/86 (88.37%), Query Frame = 0

Query:    1 MDKLDLMGRTAEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPQNYVAVSPSRQQVASQAAMESIPLVFEPRSRFYTNPIVVLDFQ 86
            M++LD++ RT+E+AR+FGIDFFSVLSRGSQYRVE+++LR+   QNY+A+SP  QQVASQ AME +PLV EP SRFY++P++VLDFQ
Sbjct: 1205 MNQLDMINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESRFYSDPVIVLDFQ 1290

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig27669.7577.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L0N9_9PHAE	6.490e-43	91.86	DNA polymerase zeta catalytic subunit n=1 Tax=Ecto...	[more]
D7G846_ECTSI	5.710e-42	90.70	DNA polymerase zeta catalytic subunit n=1 Tax=Ecto...	[more]
A0A1B6MFW8_9HEMI	9.130e-34	67.44	DNA_pol_B domain-containing protein (Fragment) n=1...	[more]
A0A699Z3X2_HAELA	9.700e-33	72.09	DNA polymerase (Fragment) n=1 Tax=Haematococcus la...	[more]
A0A7R9TJ56_MICPS	1.030e-32	65.12	Hypothetical protein (Fragment) n=1 Tax=Micromonas...	[more]
A0A388L7M8_CHABU	2.110e-32	69.77	DNA polymerase n=1 Tax=Chara braunii TaxID=69332 R...	[more]
E1ZH16_CHLVA	3.690e-32	73.26	DNA polymerase (Fragment) n=1 Tax=Chlorella variab...	[more]
A0A7R9YD13_9STRA	3.720e-32	69.77	DNA polymerase zeta catalytic subunit (Fragment) n...	[more]
A0A5J4Y5V7_9CHLO	7.360e-32	66.28	DNA polymerase (Fragment) n=1 Tax=Trebouxia sp. A1...	[more]
A0A2G5F0S8_AQUCA	1.020e-31	67.44	DNA polymerase n=1 Tax=Aquilegia coerulea TaxID=21...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023211	DNA polymerase, palm domain superfamily	GENE3D	3.90.1600.10		coord: 1..86 e-value: 3.5E-6 score: 27.8
IPR006134	DNA-directed DNA polymerase, family B, multifunctional domain	PFAM	PF00136	DNA_pol_B	coord: 21..86 e-value: 9.6E-9 score: 34.5
IPR030559	DNA polymerase zeta catalytic subunit	PANTHER	PTHR45812	FAMILY NOT NAMED	coord: 1..86
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..43
None	No IPR available	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 28..86

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig27669	contig	H-paniculata_contig27669:761..1283 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig27669.7577.1	mRNA_H-paniculata_contig27669.7577.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig27669 752..1283 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig27669.7577.1 ID=prot_H-paniculata_contig27669.7577.1|Name=mRNA_H-paniculata_contig27669.7577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MDKLDLMGRTAEMARLFGIDFFSVLSRGSQYRVEAVMLRVLKPQNYVAVS
PSRQQVASQAAMESIPLVFEPRSRFYTNPIVVLDFQ

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023211	DNA_pol_palm_dom_sf
IPR006134	DNA-dir_DNA_pol_B_multi_dom
IPR030559	PolZ_Rev3
IPR012337	RNaseH-like_sf