prot_H-paniculata_contig11183.757.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig11183.757.1
Unique Nameprot_H-paniculata_contig11183.757.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length427
Homology
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BLAST of mRNA_H-paniculata_contig11183.757.1 vs. uniprot
Match: D8LTE9_ECTSI (RecQ-mediated genome instability protein 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTE9_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 1.090e-50
Identity = 151/362 (41.71%), Postives = 189/362 (52.21%), Query Frame = 0 
Query:   77 GASRQMDRQGEVR-RVADIYPFEWQPRGKCARAPALAD-GDDDGPDFEYLEEPEFDE-------PADYDSLAEQAQRENEREPTGGGRSGGVHARSSAEGVPIPPARPQALMTPAPETPRPKIVTAREQSDRLRTEELRAVRGRSEAGVGYMDCAAA--GGSGGVFAGDEGRLQKKRGRTDSP-----AGGSVRSGPILPSPPRGPYTSLAELERVGPSVGA-YRVKAMVADIKCCKIRKRKYLLGIEIEDGSGAMLVRLCDAMARNLFGMDARAFKKLAQTDPDEVAVIQTRVEENIREMEGVMEIEFLHAVAASQSPSAPETPGALMSQGSASGDSEWSLPTVMSVTPPTVTDCQDLLAR 421
            G +R    QG  R R +     + +PRG   R PA  D  DDDGP FEYLEEP+FD+       P +  + A  A   N R P  G RS      +S                                                + G G +       GG G    G E   + KRGR+ S       GG  RS    PSPP GPYTSL +L+R+  + G  YRVKA+V+D K CKIRK+KYLL +EIEDG+  + VRL + + R LFG++AR FKK+ Q DP++   IQTRVE+ IREMEGVMEI+   +  A+ SPS P TPGA MSQ SA+GDSEW LP V+SV PPT  DC +LL+R
Sbjct:  373 GTARSQSPQGAARSRSSGSSGGQGRPRGGETRVPAFQDLEDDDGPGFEYLEEPDFDDEEHDNEPPKEAVAAANAAAVRNGRNP--GMRSDPPRVSTSTGSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVGDGEVADIEGEFGGGGRSRTGLEVSSRSKRGRSSSEIGSRAGGGRERSNGTRPSPPSGPYTSLEDLDRLAAAGGGMYRVKAVVSDTKNCKIRKKKYLLVVEIEDGTAVVSVRLSEQITRRLFGVEAREFKKIFQADPEKAISIQTRVEKEIREMEGVMEIQT--SAGATSSPS-PATPGAAMSQNSATGDSEWGLPMVVSVKPPTDGDCLELLSR 729
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11183.757.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTE9_ECTSI1.090e-5041.71RecQ-mediated genome instability protein 1 n=2 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 284..362
e-value: 2.9E-5
score: 25.4
IPR032199Recq-mediated genome instability protein 1, C-terminal OB-fold domainPFAMPF16099RMI1_Ccoord: 282..421
e-value: 8.1E-7
score: 29.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11183contigH-paniculata_contig11183:3700..7237 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11183.757.1mRNA_H-paniculata_contig11183.757.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig11183 3461..8164 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig11183.757.1 ID=prot_H-paniculata_contig11183.757.1|Name=mRNA_H-paniculata_contig11183.757.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=427bp
MNGSSADREQSRRDSNNSSPRLSRGSDRPGAPGQPSRTPVAGVVNPYAVA
RPPAANSRIAAASRNDPARVEGMDRGGASRQMDRQGEVRRVADIYPFEWQ
PRGKCARAPALADGDDDGPDFEYLEEPEFDEPADYDSLAEQAQRENEREP
TGGGRSGGVHARSSAEGVPIPPARPQALMTPAPETPRPKIVTAREQSDRL
RTEELRAVRGRSEAGVGYMDCAAAGGSGGVFAGDEGRLQKKRGRTDSPAG
GSVRSGPILPSPPRGPYTSLAELERVGPSVGAYRVKAMVADIKCCKIRKR
KYLLGIEIEDGSGAMLVRLCDAMARNLFGMDARAFKKLAQTDPDEVAVIQ
TRVEENIREMEGVMEIEFLHAVAASQSPSAPETPGALMSQGSASGDSEWS
LPTVMSVTPPTVTDCQDLLARAQAFF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032199RMI1_C