mRNA_H-paniculata_contig2765.7574.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2765.7574.1
Unique NamemRNA_H-paniculata_contig2765.7574.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2765.7574.1 vs. uniprot
Match: D7FZW9_ECTSI (Vacuolar protein sorting-associated protein 29 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZW9_ECTSI)

HSP 1 Score: 377 bits (967), Expect = 1.220e-126
Identity = 181/190 (95.26%), Postives = 188/190 (98.95%), Query Frame = 3 
Query:  198 MAGDFGELVLVLGDMHIPHREAAIPEKFKEMLVPNKMQHVLCTGNLVGKDQHDDLRTLAPNVHVVRGDFEESTAFPETKVVQIGQFRVGLVHGHQIVPWGDPNALAMTQRQLGADILITGHTHRNQVNEFGGRWFINPGSITGAYSALETDAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSKASA 767
            MAGDFGELVLVLGDMHIPHREAAIPEKFK+MLVPNKMQHVLCTGNLVGKDQ++DLRTLAPNVHVVRGDFEEST FPETKVVQIGQFRVGL HGHQIVPWGDPNALAMTQRQLGADILI+GHTHRNQVNEFGGRWFINPGSITGAYSA+E+DAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSKAS+
Sbjct:    1 MAGDFGELVLVLGDMHIPHREAAIPEKFKKMLVPNKMQHVLCTGNLVGKDQYNDLRTLAPNVHVVRGDFEESTTFPETKVVQIGQFRVGLTHGHQIVPWGDPNALAMTQRQLGADILISGHTHRNQVNEFGGRWFINPGSITGAYSAVESDAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSKASS 190
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BLAST of mRNA_H-paniculata_contig2765.7574.1 vs. uniprot
Match: A0A7S2BTX2_9STRA (Vacuolar protein sorting-associated protein 29 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BTX2_9STRA)

HSP 1 Score: 311 bits (797), Expect = 5.400e-101
Identity = 146/188 (77.66%), Postives = 166/188 (88.30%), Query Frame = 3 
Query:  198 MAG-DFGELVLVLGDMHIPHREAAIPEKFKEMLVPNKMQHVLCTGNLVGKDQHDDLRTLAPNVHVVRGDFEESTAFPETKVVQIGQFRVGLVHGHQIVPWGDPNALAMTQRQLGADILITGHTHRNQVNEFGGRWFINPGSITGAYSALETDAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSK 758
            MAG DFGEL LV+GD HIPHR A IPEKFK MLVPNKMQHVLCTGNLV K+Q D+ R+LAPN+H+VRGDF+E + FPETKVVQIGQF++GLVHGHQ+VPWGDP ALA  QR++  DILI+GHTH+N+VNE+ G+WFINPGSITGAYSALETD VPSFILLAVQG K VTYVYEL GDQV VSKSE++K
Sbjct:    1 MAGSDFGELALVIGDCHIPHRAAGIPEKFKRMLVPNKMQHVLCTGNLVSKEQFDEFRSLAPNMHIVRGDFDEQSNFPETKVVQIGQFKIGLVHGHQVVPWGDPLALAQVQREMDVDILISGHTHKNEVNEYEGKWFINPGSITGAYSALETDVVPSFILLAVQGNKVVTYVYELKGDQVNVSKSEYTK 188
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BLAST of mRNA_H-paniculata_contig2765.7574.1 vs. uniprot
Match: A0A7S3HCY7_9STRA (Vacuolar protein sorting-associated protein 29 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCY7_9STRA)

HSP 1 Score: 305 bits (782), Expect = 8.810e-99
Identity = 140/185 (75.68%), Postives = 163/185 (88.11%), Query Frame = 3 
Query:  207 DFGELVLVLGDMHIPHREAAIPEKFKEMLVPNKMQHVLCTGNLVGKDQHDDLRTLAPNVHVVRGDFEESTAFPETKVVQIGQFRVGLVHGHQIVPWGDPNALAMTQRQLGADILITGHTHRNQVNEFGGRWFINPGSITGAYSALETDAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSKA 761
            DFGEL LV+GD HIPHR A IPEKF+ MLVPNKMQHVLCTGN+V K+Q+D+L+ LAPNVHVVRG F+E + FPE KV+QIGQF++GL+HGHQIVPWGD ++LA+ QRQL  DILITGHTHRN+VNE+ G+WFINPGSITGAYS L T+  PSFILLA+QG+K VTYVYELHGDQV+VSKSEF KA
Sbjct:    3 DFGELALVVGDFHIPHRAAGIPEKFQRMLVPNKMQHVLCTGNVVTKEQYDELKGLAPNVHVVRGGFDEDSTFPEYKVIQIGQFKIGLIHGHQIVPWGDAHSLAVIQRQLDVDILITGHTHRNEVNEYEGKWFINPGSITGAYSTLTTEVTPSFILLAIQGSKVVTYVYELHGDQVDVSKSEFCKA 187
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BLAST of mRNA_H-paniculata_contig2765.7574.1 vs. uniprot
Match: A0A7S2FLA0_9STRA (Vacuolar protein sorting-associated protein 29 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FLA0_9STRA)

HSP 1 Score: 306 bits (784), Expect = 8.810e-99
Identity = 143/185 (77.30%), Postives = 162/185 (87.57%), Query Frame = 3 
Query:  207 DFGELVLVLGDMHIPHREAAIPEKFKEMLVPNKMQHVLCTGNLVGKDQHDDLRTLAPNVHVVRGDFEESTAFPETKVVQIGQFRVGLVHGHQIVPWGDPNALAMTQRQLGADILITGHTHRNQVNEFGGRWFINPGSITGAYSALETDAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSKA 761
            DFGELVLV+GD HIPHR A IPEKFK MLVPNKMQHVLCTGNLV K+Q+D+ R LAPN+H+VRGDF+ES++FPETKVVQIG F++GL HGHQIVPWGDP ALA  QRQL  DIL+TGHTH+N+VNE+ G+WFINPGSITGAYSALE+D   SFILLAVQG K VTYVYEL  D+VEVSKSEF K+
Sbjct:   22 DFGELVLVVGDCHIPHRAAMIPEKFKRMLVPNKMQHVLCTGNLVTKEQYDEFRNLAPNMHIVRGDFDESSSFPETKVVQIGNFKIGLAHGHQIVPWGDPLALAAVQRQLDVDILVTGHTHKNEVNEYEGKWFINPGSITGAYSALESDVTASFILLAVQGNKVVTYVYELRDDKVEVSKSEFQKS 206
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BLAST of mRNA_H-paniculata_contig2765.7574.1 vs. uniprot
Match: A0A7S2S7P2_9STRA (Vacuolar protein sorting-associated protein 29 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S7P2_9STRA)

HSP 1 Score: 304 bits (779), Expect = 2.670e-98
Identity = 140/187 (74.87%), Postives = 165/187 (88.24%), Query Frame = 3 
Query:  198 MAGDFGELVLVLGDMHIPHREAAIPEKFKEMLVPNKMQHVLCTGNLVGKDQHDDLRTLAPNVHVVRGDFEESTAFPETKVVQIGQFRVGLVHGHQIVPWGDPNALAMTQRQLGADILITGHTHRNQVNEFGGRWFINPGSITGAYSALETDAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSK 758
            MA DFGELVLV+GD+ IPHR A+IPE+FK MLVPNKMQHVLCTGNLV K+Q D+ R+LAPN+HVV+GDF+++  FPE KVVQIGQFR+GL+HGHQ+VPWGDP AL+  QRQ+  DI+I+GHTHRN+VNE+ G+WFINPGSITGAYSA E D +PSFILLAVQG K VTYVYELHG++VEVSKSEF K
Sbjct:    1 MASDFGELVLVVGDVLIPHRAASIPEQFKRMLVPNKMQHVLCTGNLVTKEQFDEFRSLAPNMHVVKGDFDDNPLFPEQKVVQIGQFRIGLIHGHQVVPWGDPIALSTVQRQMDVDIIISGHTHRNEVNEYEGKWFINPGSITGAYSATEPDVIPSFILLAVQGNKVVTYVYELHGEKVEVSKSEFQK 187
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BLAST of mRNA_H-paniculata_contig2765.7574.1 vs. uniprot
Match: A0A7S3NIH3_9STRA (Vacuolar protein sorting-associated protein 29 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIH3_9STRA)

HSP 1 Score: 296 bits (759), Expect = 2.630e-95
Identity = 135/188 (71.81%), Postives = 161/188 (85.64%), Query Frame = 3 
Query:  198 MAGDFGELVLVLGDMHIPHREAAIPEKFKEMLVPNKMQHVLCTGNLVGKDQHDDLRTLAPNVHVVRGDFEESTAFPETKVVQIGQFRVGLVHGHQIVPWGDPNALAMTQRQLGADILITGHTHRNQVNEFGGRWFINPGSITGAYSALETDAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSKA 761
            M+ DFGELVLVLGD+HIPHR A IPEKF+ MLVPNKMQHV+CTGNL  ++Q+D+LR LAPN+HVV GD +E  +FPE K+V +GQFR+G++HGHQIVPWGD N+LAMTQR+L  DILI+GHTH+N V EF G+WFINPGSITGAYS+LE +  PSF+LLA+QG K V YVYELHGD VEVSKSEF K+
Sbjct:    1 MSKDFGELVLVLGDVHIPHRCAFIPEKFQRMLVPNKMQHVICTGNLCTREQYDELRALAPNIHVVAGDMDEGLSFPEHKIVTVGQFRIGVIHGHQIVPWGDKNSLAMTQRRLDVDILISGHTHKNLVQEFDGKWFINPGSITGAYSSLEPEVTPSFVLLAIQGKKVVIYVYELHGDNVEVSKSEFQKS 188
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BLAST of mRNA_H-paniculata_contig2765.7574.1 vs. uniprot
Match: A0A485KLT9_9STRA (Vacuolar protein sorting-associated protein 29 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KLT9_9STRA)

HSP 1 Score: 282 bits (722), Expect = 1.050e-89
Identity = 130/187 (69.52%), Postives = 155/187 (82.89%), Query Frame = 3 
Query:  198 MAGDFGELVLVLGDMHIPHREAAIPEKFKEMLVPNKMQHVLCTGNLVGKDQHDDLRTLAPNVHVVRGDFEESTAFPETKVVQIGQFRVGLVHGHQIVPWGDPNALAMTQRQLGADILITGHTHRNQVNEFGGRWFINPGSITGAYSALETDAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSK 758
            MA DFGELVL++GDMHIPHR   IPEKFK+MLVPNKMQHVLCTGN+V K+Q D+LR LAPNVH+VRGDF+E   +P+ KV+ IGQFR+GL HGHQIVPWGD ++LA  QR+L  DIL+TGHTH+ +++   G+WF+NPGSITGAYS   TD VPSFIL+A+QG K V YVYEL GD V VSKSEF+K
Sbjct:    1 MAADFGELVLIVGDMHIPHRAVDIPEKFKKMLVPNKMQHVLCTGNMVTKEQFDELRDLAPNVHIVRGDFDELCNYPDKKVITIGQFRIGLCHGHQIVPWGDADSLAALQRKLNVDILVTGHTHQYKLHAQNGKWFVNPGSITGAYSNCTTDVVPSFILMAIQGPKIVAYVYELKGDNVVVSKSEFTK 187
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BLAST of mRNA_H-paniculata_contig2765.7574.1 vs. uniprot
Match: A0A835ZKD1_9STRA (Vacuolar protein sorting-associated protein 29 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKD1_9STRA)

HSP 1 Score: 281 bits (719), Expect = 5.870e-89
Identity = 133/192 (69.27%), Postives = 161/192 (83.85%), Query Frame = 3 
Query:  204 GDFGELVLVLGDMHIPHREAAIPEKFKEMLVPNKMQHVLCTGNLVGKDQHDDLRTLAPNVHVVRGDFEESTA--FPETKVVQIGQFRVGLVHGHQIVPWGDPNALAMTQRQLGADILITGHTHRNQVNEFGGRWFINPGSITGAYSALET-----DAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSK 758
            GDFGELVLVLGD+HIPHR AAIPEKF+ MLVPNKM+HVLCTGNLV KD++++LR LAPNVHVV GDF++S A  +PE+KVV IG +R+GLVHGHQ+VPWGDP AL++ QRQL  DIL++GHTHRN+V    GRW +NPGSITGAYS + +       VPSF+LLA+QGA+CV YVYEL G QV+V+KSEF+K
Sbjct:    2 GDFGELVLVLGDLHIPHRAAAIPEKFRRMLVPNKMKHVLCTGNLVTKDRYEELRALAPNVHVVSGDFDDSAAAAWPESKVVHIGAWRIGLVHGHQVVPWGDPAALSILQRQLDCDILVSGHTHRNEVRAHEGRWLVNPGSITGAYSPIASAPAAEPIVPSFMLLAIQGARCVAYVYELRGGQVDVTKSEFTK 193
[Close]
BLAST of mRNA_H-paniculata_contig2765.7574.1 vs. uniprot
Match: A0A067CJI0_SAPPC (Vacuolar protein sorting-associated protein 29 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJI0_SAPPC)

HSP 1 Score: 277 bits (709), Expect = 8.180e-88
Identity = 129/187 (68.98%), Postives = 152/187 (81.28%), Query Frame = 3 
Query:  198 MAGDFGELVLVLGDMHIPHREAAIPEKFKEMLVPNKMQHVLCTGNLVGKDQHDDLRTLAPNVHVVRGDFEESTAFPETKVVQIGQFRVGLVHGHQIVPWGDPNALAMTQRQLGADILITGHTHRNQVNEFGGRWFINPGSITGAYSALETDAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSK 758
            MA DFGELVL++GD HIPHR   IPEKFK+MLVPNKMQHVLCTGNLV K+  D+LR LAPNVHVVRGDF+E+  FP+ KVV IGQ+R+GL HGHQIVPWGD ++LA  QR++  DIL+TGHTH+ +++   G+WF+NPGSITGAY     D VPSFIL+A+QG K V YVYEL GD V VSKSEFSK
Sbjct:    1 MAADFGELVLIVGDYHIPHRAMDIPEKFKKMLVPNKMQHVLCTGNLVTKETFDELRELAPNVHVVRGDFDENATFPDKKVVTIGQYRIGLCHGHQIVPWGDVDSLAALQRKMNVDILVTGHTHQYKLHAQNGKWFVNPGSITGAYGNFTPDVVPSFILMAIQGNKVVAYVYELKGDNVVVSKSEFSK 187
[Close]
BLAST of mRNA_H-paniculata_contig2765.7574.1 vs. uniprot
Match: A0A1V9ZFC7_9STRA (Vacuolar protein sorting-associated protein 29 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZFC7_9STRA)

HSP 1 Score: 273 bits (699), Expect = 3.060e-86
Identity = 130/189 (68.78%), Postives = 153/189 (80.95%), Query Frame = 3 
Query:  198 MAGDFGELVLVLGDMHIPHREAAIPEKFKEMLVPNKMQHVLCTGNLVGKDQHDDLRTLAPNVHVVRGDFEE--STAFPETKVVQIGQFRVGLVHGHQIVPWGDPNALAMTQRQLGADILITGHTHRNQVNEFGGRWFINPGSITGAYSALETDAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSK 758
            MA DFGELVLV+GD+HIPHR   IPEKFK+MLVPNKMQHV+CTGNLV K+Q D+LR LAPNVHVVRGDF+E  ST FP+ KV+ IGQFR+G+ HGHQIVPWGD ++LA  QR+L  DILITGHTH  +++   G+WF+NPGSITGAYS    D +PSFIL+AVQ  K V YVYEL  D V VSKSE++K
Sbjct:    1 MAADFGELVLVVGDLHIPHRALDIPEKFKKMLVPNKMQHVVCTGNLVTKEQFDELRDLAPNVHVVRGDFDEVESTTFPDKKVITIGQFRIGICHGHQIVPWGDVDSLAALQRKLNVDILITGHTHEYKLHTQNGKWFVNPGSITGAYSNFTPDVIPSFILMAVQANKVVAYVYELKNDNVVVSKSEYTK 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2765.7574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZW9_ECTSI1.220e-12695.26Vacuolar protein sorting-associated protein 29 n=2... [more]
A0A7S2BTX2_9STRA5.400e-10177.66Vacuolar protein sorting-associated protein 29 n=1... [more]
A0A7S3HCY7_9STRA8.810e-9975.68Vacuolar protein sorting-associated protein 29 n=1... [more]
A0A7S2FLA0_9STRA8.810e-9977.30Vacuolar protein sorting-associated protein 29 n=1... [more]
A0A7S2S7P2_9STRA2.670e-9874.87Vacuolar protein sorting-associated protein 29 n=1... [more]
A0A7S3NIH3_9STRA2.630e-9571.81Vacuolar protein sorting-associated protein 29 n=1... [more]
A0A485KLT9_9STRA1.050e-8969.52Vacuolar protein sorting-associated protein 29 n=3... [more]
A0A835ZKD1_9STRA5.870e-8969.27Vacuolar protein sorting-associated protein 29 n=1... [more]
A0A067CJI0_SAPPC8.180e-8868.98Vacuolar protein sorting-associated protein 29 n=2... [more]
A0A1V9ZFC7_9STRA3.060e-8668.78Vacuolar protein sorting-associated protein 29 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2765contigH-paniculata_contig2765:13250..18749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score377.5
Seed ortholog evalue3.7e-102
Seed eggNOG ortholog2880.D7FZW9
Preferred nameVPS29
KEGG koko:K07095,ko:K18467
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000323,GO:0001881,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005767,GO:0005768,GO:0005770,GO:0005771,GO:0005773,GO:0005794,GO:0005802,GO:0005829,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009987,GO:0010008,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0016482,GO:0023051,GO:0030139,GO:0030904,GO:0030906,GO:0031090,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0032009,GO:0032010,GO:0032588,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042147,GO:0042886,GO:0043112,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044260,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045335,GO:0046872,GO:0046907,GO:0046914,GO:0048193,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:0098876,GO:1990126
EggNOG free text desc.retrograde transport, endosome to Golgi
EggNOG OGsCOG0622@1,KOG3325@2759
Ec32 ortholog descriptionsimilar to Vacuolar protein sorting 29 (Vesicle protein sorting 29)
Ec32 orthologEc-22_003790.1
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons4
Model size1605
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2765.7574.1prot_H-paniculata_contig2765.7574.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2765 14085..17570 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929836.94346-UTR-H-paniculata_contig2765:13249..140841622929836.94346-UTR-H-paniculata_contig2765:13249..14084Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2765 13250..14084 -
1691481032.73367-UTR-H-paniculata_contig2765:13249..140841691481032.73367-UTR-H-paniculata_contig2765:13249..14084Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2765 13250..14084 -
1622929837.0075624-UTR-H-paniculata_contig2765:17570..177071622929837.0075624-UTR-H-paniculata_contig2765:17570..17707Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2765 17571..17707 -
1691481032.7751458-UTR-H-paniculata_contig2765:17570..177071691481032.7751458-UTR-H-paniculata_contig2765:17570..17707Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2765 17571..17707 -
1622929837.0240085-UTR-H-paniculata_contig2765:18689..187491622929837.0240085-UTR-H-paniculata_contig2765:18689..18749Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2765 18690..18749 -
1691481032.7856152-UTR-H-paniculata_contig2765:18689..187491691481032.7856152-UTR-H-paniculata_contig2765:18689..18749Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2765 18690..18749 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929836.963067-CDS-H-paniculata_contig2765:14084..142791622929836.963067-CDS-H-paniculata_contig2765:14084..14279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2765 14085..14279 -
1691481032.7477558-CDS-H-paniculata_contig2765:14084..142791691481032.7477558-CDS-H-paniculata_contig2765:14084..14279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2765 14085..14279 -
1622929836.976026-CDS-H-paniculata_contig2765:16184..163921622929836.976026-CDS-H-paniculata_contig2765:16184..16392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2765 16185..16392 -
1691481032.7567964-CDS-H-paniculata_contig2765:16184..163921691481032.7567964-CDS-H-paniculata_contig2765:16184..16392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2765 16185..16392 -
1622929836.9921033-CDS-H-paniculata_contig2765:17400..175701622929836.9921033-CDS-H-paniculata_contig2765:17400..17570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2765 17401..17570 -
1691481032.7658849-CDS-H-paniculata_contig2765:17400..175701691481032.7658849-CDS-H-paniculata_contig2765:17400..17570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2765 17401..17570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2765.7574.1

>prot_H-paniculata_contig2765.7574.1 ID=prot_H-paniculata_contig2765.7574.1|Name=mRNA_H-paniculata_contig2765.7574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp
MAGDFGELVLVLGDMHIPHREAAIPEKFKEMLVPNKMQHVLCTGNLVGKD
QHDDLRTLAPNVHVVRGDFEESTAFPETKVVQIGQFRVGLVHGHQIVPWG
DPNALAMTQRQLGADILITGHTHRNQVNEFGGRWFINPGSITGAYSALET
DAVPSFILLAVQGAKCVTYVYELHGDQVEVSKSEFSKASA*
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mRNA from alignment at H-paniculata_contig2765:13250..18749-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2765.7574.1 ID=mRNA_H-paniculata_contig2765.7574.1|Name=mRNA_H-paniculata_contig2765.7574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5500bp|location=Sequence derived from alignment at H-paniculata_contig2765:13250..18749- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCGCTGTCGTCGCTGGTCCCTGTGTCTTCTGCTGACAGGCTAAAACAG
TGCCAAACAGGTATGTCAATCTGGTGCAAGGTTCTGCAAGGGGCAGGACC
TATACCGTAGTGCTGGCTGGAGCGGTAGCCTGTTCGAACGAGAGTTGGAG
ATAGCTATAACTTGGTTTGTGAAATCGGGAGGGCGTTATCCACTTTTTAC
AGTTCCTTGAGATGGCTCGTGTTGGTAGTACCTTGTATTTCTCCCCAGGA
CATGTAGTCAAGCTAATGTACAGTAGTCTCTGCACCGACTTAAAGTACCG
TGATTGTTCGAGCAGTATATCCAAGTGAATACAGCAGACACTCCGCATTT
TTCCCTACATGCAGTACAGTTATGCAGTATTAGCAACGATGCATCAATAG
GATGGCCGTAGGACCGCATTTTATAAGCCGAGGGTCCCGAATAAGGTGTT
GCGAAGGACTCTTAATTGCCCCAAGGCCAGCAGCAACGCAGATCAATTTT
CTGTTTTCGATATGGAACCCTTGGCATACATTTATTTACTGGCGGTTTGC
TATGCCACCTCCAGCGTTTGAACCATGAAGCTCGTTACAGTCCCTCCGTG
ACCTTTAGCTGTTTTGACAACTGCTTCACCAATAGCCGACTGGCATACAT
AATAATGGAGTCGATGAGTCATTTGAGTATAAGGTAGAGCTCATCGATGG
GCAATTCGACTGTCATGAACACGACGACAAAACCGCCCTTATGCTACTCT
AATATGCTAAATACCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCACAC
CATACCTCCCCCCCCCCCCACAACCCACCCCCCCGGCCACGCAGACACAC
CCACCAACCAAAAAAAAAAAACANNNNNNNNNNGTCGAGTGGTTTTTTAT
GTAAAAGGGAAGCATCACCCACGGGAATTTCCACCTCCAAAAAACACACC
CAAAAACCCCCCTTTTTCACCTCTAAATATCTAAAACCCCCCCCCCCCCC
CCCCCCATTAAATCACGACGCGTAATATTTGTCTCCCCCAAGCGTAACGA
AGCTGAATCTGCGGCAAGGCAACAACAAACGACTATATAAATTATATTTT
GCTTCAATAGGGCAGTCATTCCGGGAATTAGGGTATTTTCAAACGGCCGA
GACGACACGTCAACGGGAGAGCAAAAAAAATGGCAGGAGATTTCGGAGAG
CTGGTATTAGTCCTAGGCGATATGCACATTCCTCACAGGGAGGCTGCCAT
ACCGGAGAAATTCAAGGAAATGCTCGTACCAAACAAGATGCAGCACGTGC
TGTGCACCGGGAATTTAGTGGGGAAGGACCAGCACGATGATCTACGAACG
TGAGTGGGTGGCGTTTTTGACTGCGCTCTTTGGAGGCAGATTTGGGGGAG
GTGGGAGGAGGAGGGAGGGGGGCAGAAAACGATCGCAAGGTTTGAGAATG
GCTGCCGAGCGCAAGGGGCGAGTGGGGATGAGCGATAGCTGGTTCAGAGT
TTCAGTACTAACACGTTGCGGTGGTGATATTGATCCCTAATAGCGTGTGC
CACACAGATCCTGTGGCCATTATCCATTGAAGTCTACAAATTAAGCACTT
AATTTCGTGTATACGATAGCTAGCTTCTACAGAGAAGACCCCAATGAGAA
GCATGCTGTAACTAAGGGTTGGCGTTTCCGTCGCAAAACCTTTATTGAGG
ACCTAACCGATTTTACGGTAATACGTGCCATTGAGACCGATTTTTTGGGT
TTCGCAGCGAAGGAGATATCTAGATGTGCGGTCGAGGGCCACTTATCGTC
AGCAATTTTTCCAGTAGGGTGCGGTGGCAAACAAACTGTGGGATAAACCG
ATTTTTTTCTGCTACTGTATACATCAAGTGGAAACAGGTTCTTCATTAAA
GGTTTCACGATCATACAGACAGCATCTCATCATGTGGAAACTTTCGTTGT
TACAATATGTCAGGTTGTTGTTCCCGTCAGCATCTCGCAGATGCGGTAGT
CAGCAGAAATATGCCGGACATCACAAGTGCCAACCAGGCTTGCTCGTAAA
TTCCCCAGCATACCCAGTGCTGTTTTGGAAGAATCGGTGCTTTGAATAAA
CGCTTCTTCTTCCAGGTCCAGTGGCGAAGGCATGCGAGGCGCGAGTACGC
TCCTCCTCTTGGTCACTTGCGCTGATAATATTTTGCCGCTATGAGATACA
AACCAACTAACTGTAATCGTGAGAAGTACGCACTTTTTAGATACAAGCTG
CGCACCCTCAGTGTTTTATGCATGTAAAAACCGTACAAATTAGCGAGGAG
TGAAGCCGTATTGAGCCCTCCCCCCTCGTCGCCCCTTCGCATTCCTCGTG
TGCGAAGACTGGCGCCGAATGTGCACGTCGTGCGAGGTGACTTCGAAGAG
TCTACGGCATTTCCTGAGACGAAGGTGGTCCAAATAGGGCAGTTCCGCGT
AGGCCTGGTACATGGACACCAGATCGTGCCGTGGGGTGATCCCAACGCAT
TGGCTATGACACAACGGCAGTTGGGCGCAGACATACTGATAACGGGACAT
ACGCATCGTAATCAGGTAATAGGTGAAGTGCAATAGTGCACGTAAACCAT
GCTGTGATATACTGGATTTCGTATGTTGCCTGGCTTTGAGCGCGTCTGAG
TAGGCATTGAGGAGATGATTCTGCTGGATATGTGGGGGAGTATTCGGTGT
GTTTTTCTTCGCTAACTGCTTAAGGTTGCACACAACACTGTCAGGTTTAG
ATGGTCGGGAAATGAGTGTTTCCTCAAAGTAAGACCAGAAACTGCAACTC
TACATTCTCGTCGTGATGCTGAATACATTGGGCCTTCCTTCTTCATTCGT
CTCGCTTGGCATGAATACCCCACATATACCCTGTTCGCTGGTAGAACCTC
AAAGTGAATACCTAGCTACATGTATGAGGACCACATGAGTAACTCAGACG
AGATTCGCACGAACCACACTGAGAGCGCAGCGAGTGGTTAATCACCGCAC
TACATCAACTCATTCGGTGGGTGGGAATTACGTGTGCCAGGGCAGCGGAT
GTGGATTTGTCCCGTGTTTTCGCTATAGCTTATCCCAGCGAATAGCTAAT
CATGCCTAGAGAAAACGGTGGGGGCAGCAGGGAATTATCGCCCTTTTCCT
ATATTTTTGTGTCAGTCAGTGCGCCCCTAGCTTGGACTTTGGGTTCCCGA
AAGATAGTTCATGATATGCTAAAAAATCTGTACGCCTCGTGGACAGGACA
ATTTTGAACGAGGAAGTGGTCGAGACTCTCCAGGATTGTGCAGCTTGCAT
TTGTAGGGCATTCTCCCGCCCATTATGGTCAAATGTTGGTATTATTTGGG
AAAACCAACTACAGGGCTGCATTTAGAAGTTTAGGAAGTAATCGGGTGAT
CGTAGAATATGTTATATCTTGGAAGGCACACGTGAAGAGAGTACCCCAGC
TCTTAACGTACCGAGAGGTAGATGCATCTCGTTCAGCCGAGCGAAAGTGG
AAGGGGAATGACCCTACGTGAGAAGAGCGGGCAAAGCAACGACGCGGATG
CAAAGCAAATTGAAATTCTACGAAGGCGAGATATTGAGCATAATTGCTGG
TCCAAATATTTCTTTAGATTTGCGAGTTATTTACATAAAACTATATAGTA
GCATAAATACCAAGTACATAGAGCATTGGATAGCCCATCAGAGACAGATC
ATTCCTCAGCGTTAACGGCCCTGACTGAGTCTAGAGAAACGGAGGCACAG
CGTGAAAAATTGCACGTCGTAGCTGGTTGCGAGGTCACTTTGGATGTGCT
GAGGGGGAGACAACACTGTACAGGCGACGCGCTGTTATATGAATTGTAAA
TATGTACTGTATGGTGGAGGCTGCTACGGTCAGCCGTTTGATTTGGAATT
GTTTATGAAATGGCGTAAGGACTTGGTCAGGAGCCGCCGACGAGCTTGTA
GCTGCAATCGATAGTAATCACGATATGTCTCTATCTGATATTTCGCTGGA
ACGGAATTCTCTGTTATCTCTCGCGGGTTGTATCGATGCTCCGTGCTCTC
GAGCTAGGGATCAGTTGGTTTGTAACCCTGTAGAACACCGCGGATCATTG
AATACGCCAAGGATCACTGAATACCGCTTCGCCGCCTCCCATTATCTAAA
CGCCAATTTCACGGCGAGGGATGGTGATGCGCCGGAGCATGATCAGCAAT
TCCGGAAAATAGTAAAAGAAATGAAGATATTTTCGGTGTGGTTTTGGGGA
ATGGGGGGTGTAAAATATTTTTCCCACTGGAATGTGACGGCCTTAATAGG
GAAGTAGACGTGATCGCAAGGAGATCGCGGGAGATTAAGGGTACTTGGCC
ATTGGCGATCGATTCTGTGGGAACAATACTCCGTCGTCTCAAGGACACGG
CATGCCAAACCTAAGTACACCCCTTTCCTCTGCCCCCCCCGTTTTTTCAT
CGTGTGTTTGGGTTGCACAGGTGAATGAATTCGGCGGTCGTTGGTTCATT
AATCCTGGCTCAATAACCGGGGCGTACTCTGCCCTAGAGACAGACGCCGT
GCCTAGCTTCATTCTCTTGGCCGTGCAGGGGGCTAAATGCGTCACTTACG
TGTACGAGCTGCATGGTGACCAGGTCGAGGTTTCCAAGAGCGAGTTCAGC
AAGGCTTCTGCTTAATCAATAAAGGTCGTTCGCATTTGCGTCTTATTATC
CATGATATCCTTTTGCCCCACCGATAGATGTAGCTCTCTCTCTAACTTGG
TTCATCTGTAAGGTTCATGCCGAAGTTGGTTTGGAAATGGCGTCGCTCAA
GTGTATAATGTGTGTACTTCATATATTAGAGACATTTGTTGCCCGCAGTT
CCCCTATCGGTCAACTCTGTTGTAAATGAGTGATCTGATTAGTCGAAAAT
TATTGGTTGACAGGTGACGTCATCCATGACGGTGGAGTCACATTCTGTGT
GGTCATTTTTTCTGACTGGGTATGATGAATTTCACGACTGGTCTGACAGA
ATTCTGGAGATATACCAAGGATTGAGAATCTTCTTGGCAAATGATCTGTA
GCCGGCAGGTGGCGTCAATTATTATTATCGAGCACATATTTTGCGAGTGC
CGTCTTGTGCCTAGGCCGGAGCGTTTGTCACTCTACGTCGATGTTCCCGG
TATTGAGGACGTACCCTTGGTTGAACTTTGTGTTGGCAGCTTGAAGAGAG
GACTTGAACAACCTCCTGGATCTACAGCAGTAGGTTCTTGTCCCGCTGAA
CTTGTTTCCTCCATCGGGTGATAGCCAGATATCTGGTGTGGTGTGGACCA
TAAACATTCATTATATCGAATAGTGAACATTCGTATCGAAGGATGAATCT
TCATCTCACTCATCGGTTTTGATGTGGATCTTTTTACCCCGAACATAATT
TTTTTTCATGTATCAGGAGCACTGAGAGGGAAGAAGCTTAAGCGCACAAC
ACTTTTGATGTGGATCTTGAAATAAAATATTAAACGGAGACTTTCCAAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2765:13250..18749-

>mRNA_H-paniculata_contig2765.7574.1 ID=mRNA_H-paniculata_contig2765.7574.1|Name=mRNA_H-paniculata_contig2765.7574.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig2765:13250..18749- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGGAGATTTCGGAGAGCTGGTATTAGTCCTAGGCGATATGCACAT
TCCTCACAGGGAGGCTGCCATACCGGAGAAATTCAAGGAAATGCTCGTAC
CAAACAAGATGCAGCACGTGCTGTGCACCGGGAATTTAGTGGGGAAGGAC
CAGCACGATGATCTACGAACATGGCAGGAGATTTCGGAGAGCTGGTATTA
GTCCTAGGCGATATGCACATTCCTCACAGGGAGGCTGCCATACCGGAGAA
ATTCAAGGAAATGCTCGTACCAAACAAGATGCAGCACGTGCTGTGCACCG
GGAATTTAGTGGGGAAGGACCAGCACGATGATCTACGAACACTGGCGCCG
AATGTGCACGTCGTGCGAGGTGACTTCGAAGAGTCTACGGCATTTCCTGA
GACGAAGGTGGTCCAAATAGGGCAGTTCCGCGTAGGCCTGGTACATGGAC
ACCAGATCGTGCCGTGGGGTGATCCCAACGCATTGGCTATGACACAACGG
CAGTTGGGCGCAGACATACTGATAACGGGACATACGCATCGTAATCAGAC
TGGCGCCGAATGTGCACGTCGTGCGAGGTGACTTCGAAGAGTCTACGGCA
TTTCCTGAGACGAAGGTGGTCCAAATAGGGCAGTTCCGCGTAGGCCTGGT
ACATGGACACCAGATCGTGCCGTGGGGTGATCCCAACGCATTGGCTATGA
CACAACGGCAGTTGGGCGCAGACATACTGATAACGGGACATACGCATCGT
AATCAGGTGAATGAATTCGGCGGTCGTTGGTTCATTAATCCTGGCTCAAT
AACCGGGGCGTACTCTGCCCTAGAGACAGACGCCGTGCCTAGCTTCATTC
TCTTGGCCGTGCAGGGGGCTAAATGCGTCACTTACGTGTACGAGCTGCAT
GGTGACCAGGTCGAGGTTTCCAAGAGCGAGTTCAGCAAGGCTTCTGCTTA
AGTGAATGAATTCGGCGGTCGTTGGTTCATTAATCCTGGCTCAATAACCG
GGGCGTACTCTGCCCTAGAGACAGACGCCGTGCCTAGCTTCATTCTCTTG
GCCGTGCAGGGGGCTAAATGCGTCACTTACGTGTACGAGCTGCATGGTGA
CCAGGTCGAGGTTTCCAAGAGCGAGTTCAGCAAGGCTTCTGCTTAA
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