mRNA_H-paniculata_contig27643.7570.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27643.7570.1
Unique NamemRNA_H-paniculata_contig27643.7570.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27643.7570.1 vs. uniprot
Match: A0A6H5L755_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L755_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 3.920e-33
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 1 
Query:    7 QIDLLLVTHFHLDHAASLPYLTEKTGFKGRIFCTHPTKAVMRMLLADYIRLVNVHTEDILYDEKVL 204
            +IDLLLVTHFHLDHAASLPYLTEKTGFKGR+FCTHPTKAVMRMLL+DYIRLVNVHTE ILYDEK L
Sbjct:   52 EIDLLLVTHFHLDHAASLPYLTEKTGFKGRVFCTHPTKAVMRMLLSDYIRLVNVHTEHILYDEKDL 117
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BLAST of mRNA_H-paniculata_contig27643.7570.1 vs. uniprot
Match: A0A836CKW9_9STRA (Cleavage and polyadenylation specificity factor subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKW9_9STRA)

HSP 1 Score: 116 bits (291), Expect = 8.040e-29
Identity = 57/66 (86.36%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    7 QIDLLLVTHFHLDHAASLPYLTEKTGFKGRIFCTHPTKAVMRMLLADYIRLVNVHTEDILYDEKVL 204
             IDLLLVTHFHLDHAASLPY TE TGF GRIF THPTKAVMRMLLADYI+LVNV +EDILYDEK L
Sbjct:   52 DIDLLLVTHFHLDHAASLPYFTEHTGFSGRIFMTHPTKAVMRMLLADYIKLVNVSSEDILYDEKDL 117
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BLAST of mRNA_H-paniculata_contig27643.7570.1 vs. uniprot
Match: A0A6A5AC03_9STRA (Lactamase_B domain-containing protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AC03_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.210e-25
Identity = 44/66 (66.67%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    7 QIDLLLVTHFHLDHAASLPYLTEKTGFKGRIFCTHPTKAVMRMLLADYIRLVNVHTEDILYDEKVL 204
            +IDLLL+THFH+DH A LP+ TEKTGFKGRIF THPTKAVM+M+L D++R+ N+  ED +YD+K L
Sbjct:   69 EIDLLLITHFHIDHVAGLPHFTEKTGFKGRIFMTHPTKAVMQMMLRDFLRVSNISVEDQIYDDKDL 134
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BLAST of mRNA_H-paniculata_contig27643.7570.1 vs. uniprot
Match: A0A2P4YGS2_9STRA (Cleavage and polyadenylation specificity factor subunit 3 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YGS2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.220e-24
Identity = 41/66 (62.12%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    7 QIDLLLVTHFHLDHAASLPYLTEKTGFKGRIFCTHPTKAVMRMLLADYIRLVNVHTEDILYDEKVL 204
            +IDLLL+THFH+DH A+LP+ TEKT FKGR+F THPTKAVM+M+L D++R+ N+  +D +YD+K L
Sbjct:   68 EIDLLLITHFHIDHVAALPHFTEKTNFKGRVFMTHPTKAVMQMMLRDFLRVSNISVDDQIYDDKDL 133
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BLAST of mRNA_H-paniculata_contig27643.7570.1 vs. uniprot
Match: A0A397CGJ7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CGJ7_9STRA)

HSP 1 Score: 101 bits (251), Expect = 6.010e-24
Identity = 44/66 (66.67%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    7 QIDLLLVTHFHLDHAASLPYLTEKTGFKGRIFCTHPTKAVMRMLLADYIRLVNVHTEDILYDEKVL 204
            +IDLLL+THFH+DH A LP+ TEKTGFKGRIF THPTKAVM+M+L D++R+ N+  ED +YD+K L
Sbjct:   66 EIDLLLITHFHIDHVAGLPHFTEKTGFKGRIFMTHPTKAVMQMMLRDFLRVSNISVEDQIYDDKDL 131
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BLAST of mRNA_H-paniculata_contig27643.7570.1 vs. uniprot
Match: A0A1Z5JMM1_FISSO (Cleavage and polyadenylation specificity factor subunit 3 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMM1_FISSO)

HSP 1 Score: 101 bits (252), Expect = 1.520e-23
Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:    7 QIDLLLVTHFHLDHAASLPYLTEKTGFKGRIFCTHPTKAVMRMLLADYIRLV---NVHTEDILYDEKVL 204
            QID+LLVTHFHLDHAASLPYLTE+T FKGRIF THPTK+V+R+LL DY+RL+   N   ED+LY E  L
Sbjct:   56 QIDVLLVTHFHLDHAASLPYLTERTNFKGRIFMTHPTKSVLRLLLGDYLRLLQMNNAKAEDVLYTEAEL 124
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BLAST of mRNA_H-paniculata_contig27643.7570.1 vs. uniprot
Match: W4GRG9_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces TaxID=100860 RepID=W4GRG9_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.080e-23
Identity = 44/66 (66.67%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    7 QIDLLLVTHFHLDHAASLPYLTEKTGFKGRIFCTHPTKAVMRMLLADYIRLVNVHTEDILYDEKVL 204
            +IDLLL+THFH+DH A LP+ TEKTGFKGRIF THPTKAVM+M+L D++R+ N+  ED +YD+K L
Sbjct:   69 EIDLLLITHFHIDHVAGLPHFTEKTGFKGRIFMTHPTKAVMQMMLRDFLRVSNISVEDQIYDDKDL 134
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BLAST of mRNA_H-paniculata_contig27643.7570.1 vs. uniprot
Match: A0A024TS72_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024TS72_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.080e-23
Identity = 44/66 (66.67%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    7 QIDLLLVTHFHLDHAASLPYLTEKTGFKGRIFCTHPTKAVMRMLLADYIRLVNVHTEDILYDEKVL 204
            +IDLLL+THFH+DH A LP+ TEKTGFKGRIF THPTKAVM+M+L D++R+ N+  ED +YD+K L
Sbjct:   69 EIDLLLITHFHIDHVAGLPHFTEKTGFKGRIFMTHPTKAVMQMMLRDFLRVSNISVEDQIYDDKDL 134
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BLAST of mRNA_H-paniculata_contig27643.7570.1 vs. uniprot
Match: UPI001C4ECB67 (cleavage and polyadenylation specificity factor subunit 3-I-like n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4ECB67)

HSP 1 Score: 94.7 bits (234), Expect = 3.370e-23
Identity = 42/63 (66.67%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:   10 IDLLLVTHFHLDHAASLPYLTEKTGFKGRIFCTHPTKAVMRMLLADYIRLVNVHTEDILYDEK 198
            ID+LLVTHFHLDHAASLPY  EKT FKGR+F TH TKA+ ++LL+DY+++  V  ED+LYDE+
Sbjct:   78 IDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLSDYVKVSKVSVEDMLYDEQ 140
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BLAST of mRNA_H-paniculata_contig27643.7570.1 vs. uniprot
Match: A0A7S2Y2X5_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y2X5_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.880e-23
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    7 QIDLLLVTHFHLDHAASLPYLTEKTGFKGRIFCTHPTKAVMRMLLADYIRLV---NVHTEDILYDE 195
            QID++L+THFHLDHAASLPYLTE+T FKGRIF THPTKAV+R+LL DY+RL+   N   ED+LY E
Sbjct:   57 QIDVVLITHFHLDHAASLPYLTERTNFKGRIFMTHPTKAVLRLLLGDYLRLLSMKNAKPEDVLYTE 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27643.7570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L755_9PHAE3.920e-3392.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CKW9_9STRA8.040e-2986.36Cleavage and polyadenylation specificity factor su... [more]
A0A6A5AC03_9STRA4.210e-2566.67Lactamase_B domain-containing protein (Fragment) n... [more]
A0A2P4YGS2_9STRA3.220e-2462.12Cleavage and polyadenylation specificity factor su... [more]
A0A397CGJ7_9STRA6.010e-2466.67Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A1Z5JMM1_FISSO1.520e-2371.01Cleavage and polyadenylation specificity factor su... [more]
W4GRG9_9STRA2.080e-2366.67Uncharacterized protein n=5 Tax=Aphanomyces TaxID=... [more]
A0A024TS72_9STRA2.080e-2366.67Uncharacterized protein n=6 Tax=Aphanomyces TaxID=... [more]
UPI001C4ECB673.370e-2366.67cleavage and polyadenylation specificity factor su... [more]
A0A7S2Y2X5_9STRA3.880e-2371.21Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27643contigH-paniculata_contig27643:235..438 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1.1e-19
Seed eggNOG ortholog157072.XP_008874999.1
KEGG koko:K14403
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005847,GO:0005849,GO:0006139,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0017091,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0035925,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0098787,GO:0098789,GO:1901360,GO:1901363
EggNOG free text desc.nuclease activity
EggNOG OGsCOG1236@1,KOG1137@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03021
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929836.5221357-CDS-H-paniculata_contig27643:234..4381622929836.5221357-CDS-H-paniculata_contig27643:234..438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27643 235..438 -
1691481032.5459702-CDS-H-paniculata_contig27643:234..4381691481032.5459702-CDS-H-paniculata_contig27643:234..438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27643 235..438 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27643.7570.1prot_H-paniculata_contig27643.7570.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27643 235..438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27643.7570.1

>prot_H-paniculata_contig27643.7570.1 ID=prot_H-paniculata_contig27643.7570.1|Name=mRNA_H-paniculata_contig27643.7570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
ICQIDLLLVTHFHLDHAASLPYLTEKTGFKGRIFCTHPTKAVMRMLLADY
IRLVNVHTEDILYDEKVL
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mRNA from alignment at H-paniculata_contig27643:235..438-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27643.7570.1 ID=mRNA_H-paniculata_contig27643.7570.1|Name=mRNA_H-paniculata_contig27643.7570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig27643:235..438- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATGCCAGATCGACCTGCTGCTGGTAACACACTTTCACCTCGACCACGC
GGCGAGCCTGCCTTACCTGACGGAGAAGACGGGGTTCAAGGGGCGGATCT
TCTGCACGCACCCGACGAAGGCCGTTATGCGCATGCTGCTGGCCGACTAC
ATCCGCCTCGTGAACGTGCACACTGAGGATATCCTTTACGATGAGAAGGT
ATTG
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Coding sequence (CDS) from alignment at H-paniculata_contig27643:235..438-

>mRNA_H-paniculata_contig27643.7570.1 ID=mRNA_H-paniculata_contig27643.7570.1|Name=mRNA_H-paniculata_contig27643.7570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig27643:235..438- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATGCCAGATCGACCTGCTGCTGGTAACACACTTTCACCTCGACCACGC
GGCGAGCCTGCCTTACCTGACGGAGAAGACGGGGTTCAAGGGGCGGATCT
TCTGCACGCACCCGACGAAGGCCGTTATGCGCATGCTGCTGGCCGACTAC
ATCCGCCTCGTGAACGTGCACACTGAGGATATCCTTTACGATGAGAAGGT
ATTGATATGCCAGATCGACCTGCTGCTGGTAACACACTTTCACCTCGACC
ACGCGGCGAGCCTGCCTTACCTGACGGAGAAGACGGGGTTCAAGGGGCGG
ATCTTCTGCACGCACCCGACGAAGGCCGTTATGCGCATGCTGCTGGCCGA
CTACATCCGCCTCGTGAACGTGCACACTGAGGATATCCTTTACGATGAGA
AGGTATTG
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