mRNA_H-paniculata_contig27642.7569.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27642.7569.1
Unique NamemRNA_H-paniculata_contig27642.7569.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27642.7569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27642contigH-paniculata_contig27642:1164..1840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size677
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27642.7569.1prot_H-paniculata_contig27642.7569.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27642 1340..1735 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929836.44877-UTR-H-paniculata_contig27642:1163..13391622929836.44877-UTR-H-paniculata_contig27642:1163..1339Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27642 1164..1339 +
1691481032.5145705-UTR-H-paniculata_contig27642:1163..13391691481032.5145705-UTR-H-paniculata_contig27642:1163..1339Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27642 1164..1339 +
1622929836.4767475-UTR-H-paniculata_contig27642:1735..18401622929836.4767475-UTR-H-paniculata_contig27642:1735..1840Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27642 1736..1840 +
1691481032.5354033-UTR-H-paniculata_contig27642:1735..18401691481032.5354033-UTR-H-paniculata_contig27642:1735..1840Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27642 1736..1840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929836.4623706-CDS-H-paniculata_contig27642:1339..17351622929836.4623706-CDS-H-paniculata_contig27642:1339..1735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27642 1340..1735 +
1691481032.525815-CDS-H-paniculata_contig27642:1339..17351691481032.525815-CDS-H-paniculata_contig27642:1339..1735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27642 1340..1735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27642.7569.1

>prot_H-paniculata_contig27642.7569.1 ID=prot_H-paniculata_contig27642.7569.1|Name=mRNA_H-paniculata_contig27642.7569.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MRISSRSSCNIFVHVLCGLVVPCIIVYCNNCTCKRKECASLASVLVCRGV
LLPYPTLCTFLSHVASSCATVHPHPSQNPYRNRHIRVVMLGLRNSISRVD
VRNHYIHTEFSNCHHSIVRTYTGYWERIGNI*
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mRNA from alignment at H-paniculata_contig27642:1164..1840+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27642.7569.1 ID=mRNA_H-paniculata_contig27642.7569.1|Name=mRNA_H-paniculata_contig27642.7569.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=677bp|location=Sequence derived from alignment at H-paniculata_contig27642:1164..1840+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGATAACGGACCGTGTTTGTTTGGTATCTATTTTTTGGTGTCACGAGT
CCGACCGATGAGTACCAAGAAGAAAATGCCTTTGGTGCTTCTGTTGCTTT
TCACCCGCGGTAAATTCGCCTGGCAAACACAATCAGTCAACAAAATACAC
GAAGTTTATTTTTATCAATCAGCGTCATGAGGATCTCATCTCGATCATCG
TGTAACATTTTTGTTCATGTTCTTTGTGGGCTAGTCGTGCCATGTATAAT
AGTGTACTGTAATAATTGTACGTGCAAGCGTAAGGAATGTGCTTCCCTCG
CCAGTGTTTTAGTGTGCCGCGGTGTCCTGCTACCGTATCCTACCTTGTGC
ACGTTTTTGTCACATGTAGCATCATCCTGTGCCACTGTGCACCCCCATCC
CTCTCAGAATCCATATCGTAATAGACATATTCGAGTTGTCATGTTGGGGC
TCAGAAATTCAATTTCCCGAGTCGATGTACGGAATCACTACATTCACACG
GAATTTTCCAATTGCCATCACAGTATAGTACGTACGTACACAGGGTACTG
GGAACGTATTGGCAATATCTAGTGCCGAAGCGTGAACTCAGTAATAGTGG
GGGACCTCATCAAAAGTACTGCTTGTCAGTATCACTAGTACAGAGTACCC
GATCAAATCCCGAAAAATACTGGAATA
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Coding sequence (CDS) from alignment at H-paniculata_contig27642:1164..1840+

>mRNA_H-paniculata_contig27642.7569.1 ID=mRNA_H-paniculata_contig27642.7569.1|Name=mRNA_H-paniculata_contig27642.7569.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig27642:1164..1840+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGATCTCATCTCGATCATCGTGTAACATTTTTGTTCATGTTCTTTG
TGGGCTAGTCGTGCCATGTATAATAGTGTACTGTAATAATTGTACGTGCA
AGCGTAAGGAATGTGCTTCCCTCGCCAGTGTTTTAGTGTGCCGCGGTGTC
CTGCTACCGTATCCTACCTTGTGCACGTTTTTGTCACATGTAGCATCATC
CTGTGCCACTGTGCACCCCCATCCCTCTCAGAATCCATATCGTAATAGAC
ATATTCGAGTTGTCATGTTGGGGCTCAGAAATTCAATTTCCCGAGTCGAT
GTACGGAATCACTACATTCACACGGAATTTTCCAATTGCCATCACAGTAT
AGTACGTACGTACACAGGGTACTGGGAACGTATTGGCAATATCTAGATGA
GGATCTCATCTCGATCATCGTGTAACATTTTTGTTCATGTTCTTTGTGGG
CTAGTCGTGCCATGTATAATAGTGTACTGTAATAATTGTACGTGCAAGCG
TAAGGAATGTGCTTCCCTCGCCAGTGTTTTAGTGTGCCGCGGTGTCCTGC
TACCGTATCCTACCTTGTGCACGTTTTTGTCACATGTAGCATCATCCTGT
GCCACTGTGCACCCCCATCCCTCTCAGAATCCATATCGTAATAGACATAT
TCGAGTTGTCATGTTGGGGCTCAGAAATTCAATTTCCCGAGTCGATGTAC
GGAATCACTACATTCACACGGAATTTTCCAATTGCCATCACAGTATAGTA
CGTACGTACACAGGGTACTGGGAACGTATTGGCAATATCTAG
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