mRNA_H-paniculata_contig2763.7566.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig2763.7566.1 vs. uniprot
Match: D8LPM3_ECTSI (Short-chain dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPM3_ECTSI) HSP 1 Score: 436 bits (1121), Expect = 6.200e-151 Identity = 222/324 (68.52%), Postives = 257/324 (79.32%), Query Frame = 1
Query: 1 DLRGQHFVVTGANSGLGYITARELATMGAKVTMACRSESRGNAALDKIRQEALEKPVKEASVFLNCEGLEDVDVTVELPDLGSLHFVVNFAKHFKASNFTVDVLVNNAGIMAIPERKETVDGFEMQIGVNHFGPHLLTRLMEPSTKDGGRVVFLSSIAHKQPPGQPMTTLDWDNVNFDKADPYTPFQARFSYGRSKLANVLDVKAFAKHLAPRGIITYAAHPGVVNTELMRNMTDNSLVSRLMWLFAPVYPYILASPLMGALTQIRCAIDSALGKPELSGKYWGNMIEEQCSELASDPANPPRYWKLTEDMLEAKLGKKMNDLI 972
DLRG+HFVVTGAN+GLGY T RELA MGA VT+ACRS RG A+DK++ EALEKPVKE L EGL DVDV +E+ DLGSL V+ FA+ FKAS VDVL+NNAGIMAIPER+ETVDG EMQIGVNHFG HLLTRLMEP DGGRV+FLSS+ H+QPPGQ TLD+DNVN++K D Y + A YGRSKLAN+LD K FAK L RGI TYA HPG+VNTELMRNMTD+SL+SR+ L AP+ +ILA+PL GALT IRCA+D +L PE SGKYWGNM EE SELA DPANPPR W++TE +LEAKLGK ++DL+
Sbjct: 17 DLRGKHFVVTGANTGLGYATTRELAKMGAAVTLACRSAERGQQAIDKMKAEALEKPVKEGVDLL--EGLTDVDVRLEVLDLGSLQSVIAFAQRFKASGTKVDVLINNAGIMAIPERRETVDGLEMQIGVNHFGGHLLTRLMEPLMNDGGRVIFLSSLGHRQPPGQAKVTLDFDNVNYEKPDTYNSWMA---YGRSKLANILDAKEFAKRLEARGISTYACHPGIVNTELMRNMTDSSLMSRVTRLTAPLSRFILATPLTGALTTIRCAVDPSLAGPEFSGKYWGNMKEETPSELALDPANPPRLWEVTESVLEAKLGKNVDDLL 335
BLAST of mRNA_H-paniculata_contig2763.7566.1 vs. uniprot
Match: D8LP30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP30_ECTSI) HSP 1 Score: 387 bits (995), Expect = 1.180e-129 Identity = 201/325 (61.85%), Postives = 239/325 (73.54%), Query Frame = 1
Query: 1 DLRGQHFVVTGANSGLGYITARELATMGAKVTMACRSESRGNAALDKIRQEALEKPVKEASVFLNCEGLEDVDVTVELPDLGSLHFVVNFAKHFKASNFTVDVLVNNAGIMAIPERKETVDGFEMQIGVNHFGPHLLTRLMEPSTKDGGRVVFLSSIAHKQPPGQPMTTLDWDNVNFDKADPYTPFQARFSYGRSKLANVLDVKAFAKHLAPRGIITYAAHPGVVNTELMRNMTDNSLVSRLMWLFAPVYPYI-LASPLMGALTQIRCAIDSALGKPELSGKYWGNMIEEQCSELASDPANPPRYWKLTEDMLEAKLGKKMNDLI 972
DLRG+HF+VTGAN+GLGY+TARELA MGAKVT+ACRS RG A+DK++ EALEKPVKE L +GL +VDV +E+ DLGSL VV FA+ FKAS VDVLVNNAGI +P R+ET DG EMQIGVNHFG HLLTRLMEPS DGGRV+FLSS+AH +PPG P TT DWDNVNFDK Y A Y RSKLAN+ D K FAK LA R I TYA PG+V TE+ R + L+ ++ ++ L PL GALT +RCA+D +L PELSGKYWGNM EE SELA DPANPPR W++TE +LE KLGK+++D++
Sbjct: 166 DLRGKHFIVTGANTGLGYVTARELAKMGAKVTLACRSAERGQQAIDKMKAEALEKPVKEGVDLL--DGLTEVDVRLEVLDLGSLQSVVAFAQRFKASGTKVDVLVNNAGIFGVPNRRETADGLEMQIGVNHFGGHLLTRLMEPSMNDGGRVLFLSSLAHSRPPGMPKTTWDWDNVNFDKPKTYDRLSA---YCRSKLANIWDAKEFAKRLAARSINTYAVQPGLVKTEIHRGIGGGKLMMPIVNAGYVALGWVWLKGPLDGALTTVRCAVDPSLAGPELSGKYWGNMKEETPSELALDPANPPRLWEVTESVLEEKLGKRVDDVV 485
BLAST of mRNA_H-paniculata_contig2763.7566.1 vs. uniprot
Match: A0A6H5JP92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP92_9PHAE) HSP 1 Score: 379 bits (973), Expect = 1.960e-128 Identity = 196/325 (60.31%), Postives = 233/325 (71.69%), Query Frame = 1
Query: 1 DLRGQHFVVTGANSGLGYITARELATMGAKVTMACRSESRGNAALDKIRQEALEKPVKEASVFLNCEGLEDVDVTVELPDLGSLHFVVNFAKHFKASNFTVDVLVNNAGIMAIPERKETVDGFEMQIGVNHFGPHLLTRLMEPSTKDGGRVVFLSSIAHKQPPGQPMTTLDWDNVNFDKADPYTPFQARFSYGRSKLANVLDVKAFAKHLAPRGIITYAAHPGVVNTELMRNMTDNSLVSRLMWLFAPVYPYI-LASPLMGALTQIRCAIDSALGKPELSGKYWGNMIEEQCSELASDPANPPRYWKLTEDMLEAKLGKKMNDLI 972
DLRG+HF+VTGAN+GLGY+TARELA MGAKVT+ACRS RG A+DK++ E LEKP KE L +GL +VDV +E+ DLGSL V+ FA+ FKAS VDVLVNNAGI +P R+ET DG EM IGVNHFG HLLTRLMEPS DGGRV+FLSS+ H +PPG P TT DWDN+NFDK Y A Y RSKLAN+ D K FAK LA R I TYA PG+V TE+ R + L+ ++ ++ L PL GALT IRCA+D L PELSGKYWGNM EE SELA DPANPPR W++TE +LE KLGK+++D+
Sbjct: 19 DLRGKHFIVTGANTGLGYVTARELAKMGAKVTLACRSAERGQQAIDKLKAEVLEKPAKEGVDLL--DGLTEVDVRLEVLDLGSLRSVIAFAQGFKASGTKVDVLVNNAGIFGVPNRRETADGLEMHIGVNHFGGHLLTRLMEPSINDGGRVLFLSSLTHSRPPGMPKTTWDWDNMNFDKPKTYDRLSA---YCRSKLANIWDAKEFAKRLAARSINTYAVQPGLVKTEIHRGIGGGKLIMPIVNAGYAALGWVWLKGPLDGALTTIRCAVDPCLAGPELSGKYWGNMKEETPSELALDPANPPRLWEITESVLEDKLGKRVDDVF 338
BLAST of mRNA_H-paniculata_contig2763.7566.1 vs. uniprot
Match: D7FTL4_ECTSI (Similar to Retinol dehydrogenase 12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTL4_ECTSI) HSP 1 Score: 257 bits (657), Expect = 1.750e-82 Identity = 131/214 (61.21%), Postives = 155/214 (72.43%), Query Frame = 1
Query: 331 MAIPERKETVDGFEMQIGVNHFGPHLLTRLMEPSTKDGGRVVFLSSIAHKQPPGQPMTTLDWDNVNFDKADPYTPFQARFSYGRSKLANVLDVKAFAKHLAPRGIITYAAHPGVVNTELMRNMTDNSLVSRLMWLFAPVYPYILASPLMGALTQIRCAIDSALGKPELSGKYWGNMIEEQCSELASDPANPPRYWKLTEDMLEAKLGKKMNDLI 972
MAIP + TVDG E QIGVNHFG HLLTRLME DGGRVVFLSS+AHK DWDNVN+ K + Y P A YGRSKLANVLD KAFA HL+ R I TYA HPGVVNT+L RN+TD L+SR+ + + ++LASPL G+LT +RCAID AL PE SGKYW +M + Q S LASDPANPPR W++TE++LE KLGKK+ +L+
Sbjct: 1 MAIPTEERTVDGLEKQIGVNHFGTHLLTRLMEKQIIDGGRVVFLSSVAHKH------GGWDWDNVNYTKPNKYVPMIA---YGRSKLANVLDAKAFAGHLSDRRINTYALHPGVVNTDLFRNVTDGRLISRVFRVAKSLGAFVLASPLTGSLTTLRCAIDPALAGPEFSGKYWSHMKQVQPSALASDPANPPRLWEITEELLETKLGKKIENLL 205
BLAST of mRNA_H-paniculata_contig2763.7566.1 vs. uniprot
Match: A0A6H5JGN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGN4_9PHAE) HSP 1 Score: 196 bits (498), Expect = 1.650e-58 Identity = 105/176 (59.66%), Postives = 122/176 (69.32%), Query Frame = 1
Query: 199 EGLEDVDVTVELPDLGSLHFVVNFAKHFKASNFTVDVLVNNAGIMAIPERKETVDGFEMQIGVNHFGPHLLTRLMEPSTKDGGRVVFLSSIAHKQPPGQPMTTLDWDNVNFDKADPYTPFQARFSYGRSKLANVLDVKAFAKHLAPRGIITYAAHPGVVNTELMRNMTDNSLVSRL 726
EGL DVDV VE+ DLG L VV+FA+ K+S +DVL++NAGIMAIP K +VDG E QIGVNHF HLL+RLM DGGRVVF SS+AHK DWDNVN+ K + + P A YGRSKLANVLD K FA HL+ R I TYA HPGVVNT+L RN TD L+SR+
Sbjct: 34 EGLSDVDVQVEVLDLGVLQSVVSFAQRLKSSGQKIDVLIDNAGIMAIPTEKRSVDGLEKQIGVNHFVTHLLSRLMGKQIIDGGRVVFFSSVAHKH------GGCDWDNVNYTKPNEHGPMIA---YGRSKLANVLDAKGFAGHLSDRRINTYALHPGVVNTDLFRNATDGRLISRM 200
BLAST of mRNA_H-paniculata_contig2763.7566.1 vs. uniprot
Match: A0A6J8C7G3_MYTCO (RDH12 n=3 Tax=Mytilus TaxID=6548 RepID=A0A6J8C7G3_MYTCO) HSP 1 Score: 179 bits (454), Expect = 2.180e-50 Identity = 120/315 (38.10%), Postives = 171/315 (54.29%), Query Frame = 1
Query: 4 LRGQHFVVTGANSGLGYITARELATMGAKVTMACRSESRGNAALDKIRQEALEKPVKEASVFLNCEGLEDVDVTVELPDLGSLHFVVNFAKHFKASNFTVDVLVNNAGIMAIPERKETVDGFEMQIGVNHFGPHLLTRLMEPSTKDGG--RVVFLSSIAHKQPPGQPMTTLDWDNVNFDKADPYTPFQARFSYGRSKLANVLDVKAFAKHLAPRGIITYAAHPGVVNTELMRNMTDNSLVSRLMW-LFAPVYPYILASPLMGALTQIRCAIDSALGKPELSGKYWGNMIEEQCSELASDPANPPRYWKLTEDMLE 939
L G+H ++TGAN+G+G TA +LA GAKVT+ACR R A D I+Q G +++ V+ +L SL V +FA+ + +DVL+NNAGIM P K T DGFEMQ GVNH G LLT L+ K RVV +SS+AH++ +NFD + + +Y +SKLANVL AK L G+ TY+ HPGV+NTEL R++T + + W + V Y++ +P GA T I CA+D +L E +GKY+ + ++ S+ A + N R WKL+ M++
Sbjct: 46 LDGKHVIITGANTGIGKETAIDLANRGAKVTLACRDMKRAQDAADDIKQ---------------ITGNQNI--IVKKLNLASLKSVRSFAEDINKNEKRIDVLINNAGIMRCPYWK-TDDGFEMQFGVNHLGHFLLTNLLLDKLKISAPSRVVTVSSLAHER-----------GKMNFDDLNQEKNYDKGSAYSQSKLANVLFSSELAKKLQGTGVTTYSLHPGVINTELSRHVTQS-----MGWRMLLSVIKYLIKTPNEGAQTTIYCAVDESLS--EETGKYYSDCAKKTPSKEALNDENAKRLWKLSAKMVD 324
BLAST of mRNA_H-paniculata_contig2763.7566.1 vs. uniprot
Match: A0A433SZU2_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433SZU2_ELYCH) HSP 1 Score: 176 bits (447), Expect = 2.580e-49 Identity = 117/312 (37.50%), Postives = 168/312 (53.85%), Query Frame = 1
Query: 22 VVTGANSGLGYITARELATMGAKVTMACRSESRGNAALDKIRQEALEKPVKEASVFLNCEGLEDVDVTVELPDLGSLHFVVNFAKHFKASNFTVDVLVNNAGIMAIPERKETVDGFEMQIGVNHFGPHLLTRLMEPSTK--DGGRVVFLSSIAHKQPPGQPMTTLDWDNVNFDKADPYTPFQARFSYGRSKLANVLDVKAFAKHLAPRGIITYAAHPGVVNTELMRNMTDNSLVSRLMWLFAPVYPYILASPLMGALTQIRCAIDSALGKPELSGKYWGNMIEEQCSELASDPANPPRYWKLTEDMLEAKLG 951
++TGAN+GLG TAR+LA G ++ MACR+ +G A R+E +E+ E DV V+ DL S + NFAK F + +D+L+NNAG+MA P+ T DG EMQIG NHFG LLT L+ K R+V LSS+AH ++ WD++N DK Y + A YG+SKLAN+L + L G+ + HPG VNT+L R+ T+ + L P+ +P+ GA T + CA+ L E+SGKY+ + E+ S A+ R W+LTE++++ KL
Sbjct: 17 LITGANTGLGKETARDLAKRGGRIIMACRNLEKGEA----TRKEIVEETKNE-------------DVVVQELDLASFESIQNFAKKFNETETRLDILINNAGVMACPKTL-TKDGLEMQIGTNHFGHFLLTNLLLDKLKACSPSRIVILSSMAHA------FASIKWDDINSDKK--YGDWAA---YGQSKLANILHCLELSNRLKGTGVTVNSVHPGGVNTDLQRH-TNRGIFK----LLKPLSKLFFKTPVDGAQTTLYCALSPDL--EEVSGKYFVDCKEKAPSRRGQSEADAKRLWELTEEIIQQKLS 292
BLAST of mRNA_H-paniculata_contig2763.7566.1 vs. uniprot
Match: UPI000359BC7D (retinol dehydrogenase 13 isoform X1 n=3 Tax=Aplysia californica TaxID=6500 RepID=UPI000359BC7D) HSP 1 Score: 171 bits (434), Expect = 3.270e-47 Identity = 117/318 (36.79%), Postives = 171/318 (53.77%), Query Frame = 1
Query: 4 LRGQHFVVTGANSGLGYITARELATMGAKVTMACRSESRGNAALDKIRQEALEKPVKEASVFLNCEGLEDVDVTVELPDLGSLHFVVNFAKHFKASNFTVDVLVNNAGIMAIPERKETVDGFEMQIGVNHFGPHLLTRLMEPSTKDGG--RVVFLSSIAHKQPPGQPMTTLDWDNVNFDKADPYTPFQARFSYGRSKLANVLDVKAFAKHLAPRGIITYAAHPGVVNTELMRNM--TDNSLVSRLMWLFAPVYPYILASPLMGALTQIRCAIDSALGKPELSGKYWGNMIEEQCSELASDPANPPRYWKLTEDMLEAK 945
+ G+ +VTGAN+G+G TARELA G ++ MACR LDK E ++ A+ + C L DL S + FAK ++ VD+L+NNAG+M P+ T DG EMQ+GVNHFG LLT+L+ K R++FLSS+AH + GQ +NF+ + + +R YG+SKLANVL + AK L + HPGVVNTEL R++ T + + S ++F P+ +L +PL GA T +R A+D +L K ++GKY+ + E++ + D A R W ++E K
Sbjct: 59 IAGKTVIVTGANTGIGKETARELARRGGRIIMACRD-------LDKCEIARKEIVLETANKSVECRKL----------DLASFASIRAFAKLINSTESHVDILINNAGVMMCPKML-TEDGLEMQMGVNHFGHFLLTQLLLDKLKASAPSRIIFLSSLAHTR--GQ---------INFEDLNSAQEYNSRTVYGQSKLANVLCTQELAKILEGTNVTVNCLHPGVVNTELSRHLGFTQSKIGS---FVFFPIKFLLLKTPLQGAQTTLRLALDPSLEK--VTGKYFSDCREKEPAPQGQDAAAAKRLWAVSEAWTRVK 342
BLAST of mRNA_H-paniculata_contig2763.7566.1 vs. uniprot
Match: A0A3B3RWA0_9TELE (Retinol dehydrogenase 12-like n=2 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3RWA0_9TELE) HSP 1 Score: 169 bits (428), Expect = 7.720e-47 Identity = 112/313 (35.78%), Postives = 166/313 (53.04%), Query Frame = 1
Query: 4 LRGQHFVVTGANSGLGYITARELATMGAKVTMACRSESRGNAALDKIRQEALEKPVKEASVFLNCEGLEDVDVTVELPDLGSLHFVVNFAKHFKASNFTVDVLVNNAGIMAIPERKETVDGFEMQIGVNHFGPHLLTRLMEPSTKDGG--RVVFLSSIAHKQPPGQPMTTLDWDNVNFDKADPYTPFQARFSYGRSKLANVLDVKAFAKHLAPRGIITYAAHPGVVNTELMRNMTDNSLVSRLMWLFAPVYPYILASPLMGALTQIRCAIDSALGKPELSGKYWGNMIEEQCSELASDPANPPRYWKLTEDML 936
L G+ ++TGAN+G+G TAR+LA GA+V MACR +G A+D+I Q++ K D+ + DL + FA+ VD+L+NNAGIM P K T+DGFEMQ GVNH G LLT L+ K R++ +SS+AH P + D++N +K+ + ++ +YG+SKLAN+L + AK L G+ TYA HPGVV +EL R+++ + + M + P+ S + GA T I CA+ L K +G Y+ + CS+ A D + W+L+ ML
Sbjct: 18 LDGKTVIITGANTGIGKETARDLAKRGARVIMACRDVEKGEVAMDEIMQDSGSK-----------------DIVLSKLDLSDTKSIREFAELINKEEKQVDILINNAGIMMCPYSK-TIDGFEMQFGVNHLGHFLLTYLLIDLIKKSAPARIINVSSMAHTWGP------IRLDDINHEKS-----YDSKKAYGQSKLANILCTRLMAKKLEGTGVTTYALHPGVVQSELWRHLSAPAQLGVKM-----IKPFTKTS-VQGAQTSIYCAVAPELEKT--TGGYYSDCAPASCSQAARDDEMAQKLWELSCQML 293
BLAST of mRNA_H-paniculata_contig2763.7566.1 vs. uniprot
Match: A0A7R9X9Q0_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Argulus foliaceus TaxID=509924 RepID=A0A7R9X9Q0_9CRUS) HSP 1 Score: 171 bits (433), Expect = 7.870e-47 Identity = 119/316 (37.66%), Postives = 172/316 (54.43%), Query Frame = 1
Query: 4 LRGQHFVVTGANSGLGYITARELATMGAKVTMACRSESRGNAALDKIRQEALEKPVKEASVFLNCEGLEDVDVTVELPDLGSLHFVVNFAKHFKASNFTVDVLVNNAGIMAIPERKETVDGFEMQIGVNHFGPHLLTRLMEPSTKDGG--RVVFLSSIAHKQPPGQPMTTLDWDNVNFDKADPYTPFQARFSYGRSKLANVLDVKAFAKHLAPRGIITYAAHPGVVNTELMRNMTD--NSLVSRLMWLFAPVYPYILASPLMGALTQIRCAIDSALGKPELSGKYWGNMIEEQCSELASDPANPPRYWKLTEDMLE 939
L G+ +VTG N+G+G T R+L GAK+ MACR ++ A +IRQ + ++ V DL SL V +F+ + +L+NNAGIM PE + T DGFEM GVNH G LLT L+ K+ R+V +SS AH+ G+ +D+D++N K+ Y P++A Y +SKLAN+L K AK L G+ TY HPGVV+TEL R M++ N + R++ F+ ++ L +P GA T I CA+D AL SGKY+ + E + S A D + R WKL+ +M++
Sbjct: 80 LDGKTVIVTGCNTGIGKETCRDLIKRGAKLIMACRDVTKAEKAAAEIRQTKTD------------------EIIVRHLDLTSLDSVRSFSSQILKEEPKIHILINNAGIMMHPEDR-TKDGFEMHFGVNHLGHFLLTLLLLDRLKESAPARIVTVSSAAHEG--GE----MDFDDINLSKS--YKPWKA---YSQSKLANILFSKELAKQLHGTGVTTYCLHPGVVDTELGRYMSESGNKTIVRILQFFSSLF---LDTPAKGAQTTIYCAVDEAL--ENTSGKYYLDCRETEPSSRARDEEDSKRLWKLSLEMVK 360 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2763.7566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2763.7566.1 >prot_H-paniculata_contig2763.7566.1 ID=prot_H-paniculata_contig2763.7566.1|Name=mRNA_H-paniculata_contig2763.7566.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=327bp DLRGQHFVVTGANSGLGYITARELATMGAKVTMACRSESRGNAALDKIRQback to top mRNA from alignment at H-paniculata_contig2763:11256..15139- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2763.7566.1 ID=mRNA_H-paniculata_contig2763.7566.1|Name=mRNA_H-paniculata_contig2763.7566.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3884bp|location=Sequence derived from alignment at H-paniculata_contig2763:11256..15139- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2763:11256..15139- >mRNA_H-paniculata_contig2763.7566.1 ID=mRNA_H-paniculata_contig2763.7566.1|Name=mRNA_H-paniculata_contig2763.7566.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1962bp|location=Sequence derived from alignment at H-paniculata_contig2763:11256..15139- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |