prot_H-paniculata_contig11178.756.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig11178.756.1
Unique Nameprot_H-paniculata_contig11178.756.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length366
Homology
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BLAST of mRNA_H-paniculata_contig11178.756.1 vs. uniprot
Match: D8LKF5_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF5_ECTSI)

HSP 1 Score: 328 bits (842), Expect = 5.220e-103
Identity = 225/391 (57.54%), Postives = 258/391 (65.98%), Query Frame = 0 
Query:    8 MQPSSDEAFWAAVAAQHVAEGSSTAP-WKQTQGGKPSGSK-------------RATGKAAAAGAGNSEH----CALCSDKTPGRWLTRCKGPGGGP---RQQPCSVWVHPACAWQNEEFAMRCIGGSAA-TEECEVR-LPTVFFACPQHDKPATYCSCKREEREDEEGQEDYIECESCNEWYHFSCEGLDEADPPDSYSCKRCRKLAAKGQKVPAGERRRNKAKTNEYMSQMMANKVMQIQQWVAEVKAFAMDDFSDDDFNNENSASSVVDATAASEARYVVMKELIGRKEDLEAPLEEDSDEGDAKAGXXXXXXXXXXXXXXXXXXXXXXXXXX---------EKFFCCQGLEGVYGEAVEMLSELESEAEAMEVAVDTWFDEHRVRYWR 366
            M  SSDE FWAAVAAQ   EGSST P W+Q     P+                +A G AAAA A   E     CALC DK+ GRW+TRCKG GGG    +QQ C++WVHPACAWQNE +AMR I GS+  T + E R LPTVFFACP HDKPATYCSCKREE EDE+G+EDYIECESCNEWYHFSCEGLDE +PP+ YSCKRCR+LAAKGQKVPA ERRRNKAKTNEY+S+M+ANKVMQIQQWV EVK  A  + +                     ARY  +K+L+ R+E+LEAPLE           XXXXXXXXXXXXXXXXXXXXXXXXXX         E      G+ GVY EA  +L  +  E++  E AVD WFDEH   Y++
Sbjct:    1 MLTSSDEDFWAAVAAQVAKEGSSTTPAWRQVGVAPPTSPSSGDSGHGRAGTRGKAKGPAAAASAAEVEAAGVCCALCEDKSEGRWVTRCKGSGGGTGTRQQQTCNIWVHPACAWQNEGYAMRSIAGSSRLTADGEKRRLPTVFFACPLHDKPATYCSCKREEGEDEDGEEDYIECESCNEWYHFSCEGLDEDNPPERYSCKRCRQLAAKGQKVPAQERRRNKAKTNEYLSEMLANKVMQIQQWVKEVKVLAATNTA----XXXXXXXXXXXXXXXXXARYASVKDLLARREELEAPLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDEEDGKVVHGMGGVYAEASALLESVAEESDRAEGAVDEWFDEHPEPYYK 387
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11178.756.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKF5_ECTSI5.220e-10357.54PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 332..359
NoneNo IPR availableGENE3D2.60.120.650coord: 134..282
e-value: 3.2E-13
score: 51.5
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 139..188
e-value: 4.2E-9
score: 46.2
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 139..189
e-value: 5.6E-7
score: 29.4
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 137..190
score: 9.179
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 140..187
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 131..193

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11178contigH-paniculata_contig11178:3043..8146 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11178.756.1mRNA_H-paniculata_contig11178.756.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig11178 2777..8146 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig11178.756.1 ID=prot_H-paniculata_contig11178.756.1|Name=mRNA_H-paniculata_contig11178.756.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=366bp
MAVTTADMQPSSDEAFWAAVAAQHVAEGSSTAPWKQTQGGKPSGSKRATG
KAAAAGAGNSEHCALCSDKTPGRWLTRCKGPGGGPRQQPCSVWVHPACAW
QNEEFAMRCIGGSAATEECEVRLPTVFFACPQHDKPATYCSCKREEREDE
EGQEDYIECESCNEWYHFSCEGLDEADPPDSYSCKRCRKLAAKGQKVPAG
ERRRNKAKTNEYMSQMMANKVMQIQQWVAEVKAFAMDDFSDDDFNNENSA
SSVVDATAASEARYVVMKELIGRKEDLEAPLEEDSDEGDAKAGGSGGGGG
KKKGGAGGGGEERGGTVGGEKFFCCQGLEGVYGEAVEMLSELESEAEAME
VAVDTWFDEHRVRYWR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD