mRNA_H-paniculata_contig2763.7565.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2763.7565.1 vs. uniprot
Match: D8LPM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM5_ECTSI) HSP 1 Score: 349 bits (896), Expect = 2.190e-104 Identity = 309/843 (36.65%), Postives = 392/843 (46.50%), Query Frame = 1
Query: 1 VSSSVVRSAFANISSRFPVNLNAFVSAHSLGISPAKLLSMFEKARAKRRDWRAEGRSMPRKVMRETLWVEDVMWALRVRKNRKEFDKWEVNEHMKEWVSILEAATPDNPTVFVPPADHRIALPLSYTELEESTFTGDSCRGGATTSTTIATIAAGH----GSRVFSSRSGGGGSRGEMLGISAEEPLLLGCTNPNRAKIVLQRGGGHQCVGASSRSHPAVDKPIPPGKAWISFEPRGPSTLTTTLSRPATAEAAVAARNRTMFS--------------AHGSWDGEDKAIRRVEKDGDETTVQLYTHTGVSKGSSTEDTDFTSFASLSAVQQKGLFGKKASPMTIARSARFVPRRRPLSRVDGVRLRSKNAS-KETVELYNMEAKVNDAAGFAPIDS---GVLTQPPKAGGSIGRGV--AWSSAA-SVLTYDRECLAVQEQLGKRTIQQSSGTTDMPHDPRLPADAAPGAGKEAGGEWVTARDDDAFVAAAHRNSAKPS-SLGVARKNDDRRNTANEDQ-------PSSGNEAKVVVDESKMWWLRAR-ESDLRPETRRS---TAAVAGRGL-----GAFVP---------------------DGWAGAAGGVSQGR---PATAPTCGFSTEAKQRLLEECLQRRSHIKELEGSASAWVGDSERALTRARSGTNFRHVISRNEIRHNLDACRQRTACETLALDLRGHGTPLIAPEMTLPPNMTDLPQPH--ADSKPSAASGLSETTEGLPRGSGSGA--RFRIGRRCD-------------------GISALTNGRPSFKPGRVRRTLQEDRVAVAVSQARMWGMCSQAQFGRFGEKPYVHSF 2262
+ S+VVRSAFA ISSRFP +L FV AH LGIS A L M +AR+KR +WRA G+ +P +VMR+TLWVEDVMWALRVRK R+EFDKWE+NE+ EWVSILEAATP+N TVF PP DHRIA PLS+TEL + + A + A+++ G GS + S GG R G +G S +V +P+ GK W E R P++L T SRP +A AAV W GE A +D +T+ G S G++ + + Q++ LFG+K SP T+ARS + PRRRP DG R R + S +T ELY ME +N ++ FA D+ + K G GR AW S A S LT+D + + + + ++ T+D R+ A A+ G VTA A AA + P+ L NDD+ +T Q + WW A + RP TRRS + VAGRG G + P DG G GR A AP CGFSTE+KQR LE+ L+RRS + + EG AS V E L RA+SGT FRH I R IR N D + ACETLALDLRG+GT L+APE T +P A + ++ASG G P + A RIG G A + P F P R T+QE R+ QA MWG CSQ FGRF EKPYVHSF
Sbjct: 31 IKSTVVRSAFAAISSRFP-DLQVFVGAHGLGISQATLREMVGRARSKRSNWRARGKDLPLRVMRDTLWVEDVMWALRVRKTRREFDKWEINEYRDEWVSILEAATPNNHTVFAPPPDHRIAPPLSFTELLQQDSSSLPSVLSANPGGSSASVSNGXXXXTGSHLTSQSRGGRNDRSGSTGTGNSSERRIGGAXXXXXXXXXXXXXXXXXXXXXXXSMGSVTRPVSTGKMWTPLESRLPTSLLLT-SRPGSAAAAVGGTGXXXXXDLAXXXXXXXXXXXXGNEWGGEGGA-----EDPTVWNFSSWTNGGGSGGANGHGS--CEEGHVVTAQERALFGRKPSPATVARSTSYAPRRRPPCSTDGRRHRPEVGSGDDTAELYEMERDINTSS-FALADATDLSITAASHKRGRGDGRSAVRAWGSVATSALTFD-DAAGLSHANAEASADSATETSD-----RIDASASGGGRLRRASGTVTA---GATAAAGVKRIGVPTFELSCPEDNDDQDDTGGGRQGXXXXXXXXXXXXXXXXAGSAAEWWCEALGPTSRRPVTRRSLDHSGGVAGRGAPQGTGGTWGPWEEDPGGGCGQHERSGCGWTSDGTVQGGEGYRGGRRRASAAAPNCGFSTESKQRNLEDFLKRRSSMDKSEGLASERVRVWEAGLARAQSGTRFRHQIGRGTIRENYDQSLRDKACETLALDLRGYGTHLLAPETA-----TTIPTAGGGASERCASASGAGVAATGTPTRAMKRAWSSTRIGGXXXXXXXXXXXGGVRLLLPSPTGAGADCSKPPPFGPVRG-TTVQEARITAVTHQAGMWGKCSQGHFGRFEEKPYVHSF 848
BLAST of mRNA_H-paniculata_contig2763.7565.1 vs. uniprot
Match: A0A6H5JI14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI14_9PHAE) HSP 1 Score: 184 bits (467), Expect = 1.140e-44 Identity = 130/339 (38.35%), Postives = 169/339 (49.85%), Query Frame = 1
Query: 52 PVNLNAFVSAHSLGISPAKLLSMFEKARAKRRDWRAEGRSMPRKVMRETLWVEDVMWALRVRKNRKEFDKWEVNEHMKEWVSILEAATPDNPTVFVPPADHRIALPLSYTEL--EESTFTGD--SCRGGATTSTTIATIAAGHGSRVFSSRSGGGGSRGEMLGISAEEPLLLGCTNPNRAKIVLQRGGGHQCVGASSRSHPAVDKPIPPGKAWISFEPRGPSTLTTTLSRPATAEAAVAARNR--------------TMFSAHGSWDGEDKAIRRVEKDGDETTVQLYTHTGVSKGSSTEDTDFTSFASLSAVQQKGLFGKKASPMTIARSARFVPRRR 1014
P +L FV AH LGIS A L M KAR+KR +WRA G+ +P +VMR+TLWVEDVMWALRVRK R+EFDKWE NEH EWVSILEAATP+N TVF PP DHRIA PLS+TEL ++S+ S G +++ S + S GG R G S +V +P+ GK W+ E R P++L T SRP +AEA V T+ + W GE A +D +T+ G S G++ + ++ Q++ LFG+K SP T+ARS + PR R
Sbjct: 29 PEDLQVFVGAHGLGISQATLREMVGKARSKRSNWRARGKDLPLRVMRDTLWVEDVMWALRVRKTRREFDKWEFNEHRDEWVSILEAATPNNHTVFAPPPDHRIAPPLSFTELLQQDSSSLPSVLSANPGGSSAXXXXXXXXXXXSHLTSQSRGGKKGRSGNTGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESMG--SVTRPVSTGKMWVPLESRLPTSLLLT-SRPGSAEAGVGETGAGACGDLATTTGGTPTVVTGGNEWGGEGGA-----EDPTVWNFSSWTNGGGSGGANGHGS--CGEGHVATAQERALFGRKPSPATVARSTSYAPRLR 357 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2763.7565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2763.7565.1 >prot_H-paniculata_contig2763.7565.1 ID=prot_H-paniculata_contig2763.7565.1|Name=mRNA_H-paniculata_contig2763.7565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=756bp VSSSVVRSAFANISSRFPVNLNAFVSAHSLGISPAKLLSMFEKARAKRRDback to top mRNA from alignment at H-paniculata_contig2763:1274..7688- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2763.7565.1 ID=mRNA_H-paniculata_contig2763.7565.1|Name=mRNA_H-paniculata_contig2763.7565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6415bp|location=Sequence derived from alignment at H-paniculata_contig2763:1274..7688- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2763:1274..7688- >mRNA_H-paniculata_contig2763.7565.1 ID=mRNA_H-paniculata_contig2763.7565.1|Name=mRNA_H-paniculata_contig2763.7565.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4536bp|location=Sequence derived from alignment at H-paniculata_contig2763:1274..7688- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |