mRNA_H-paniculata_contig27619.7562.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27619.7562.1
Unique NamemRNA_H-paniculata_contig27619.7562.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27619.7562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27619contigH-paniculata_contig27619:2..596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size595
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27619.7562.1prot_H-paniculata_contig27619.7562.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27619 99..434 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929835.6644614-UTR-H-paniculata_contig27619:1..981622929835.6644614-UTR-H-paniculata_contig27619:1..98Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27619 2..98 +
1691481032.1553936-UTR-H-paniculata_contig27619:1..981691481032.1553936-UTR-H-paniculata_contig27619:1..98Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27619 2..98 +
1622929835.7035432-UTR-H-paniculata_contig27619:434..5961622929835.7035432-UTR-H-paniculata_contig27619:434..596Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27619 435..596 +
1691481032.1788008-UTR-H-paniculata_contig27619:434..5961691481032.1788008-UTR-H-paniculata_contig27619:434..596Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27619 435..596 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929835.6827831-CDS-H-paniculata_contig27619:98..4341622929835.6827831-CDS-H-paniculata_contig27619:98..434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27619 99..434 +
1691481032.165131-CDS-H-paniculata_contig27619:98..4341691481032.165131-CDS-H-paniculata_contig27619:98..434Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27619 99..434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27619.7562.1

>prot_H-paniculata_contig27619.7562.1 ID=prot_H-paniculata_contig27619.7562.1|Name=mRNA_H-paniculata_contig27619.7562.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MSYPTRSGVGPWRTLCSPLFLDATHYRSSSSSIHGNKASPSRSLCLELYI
YVSNHSHITGKKKVSLPPSPKSLLLSLFSTNTVFPRAMAKQRGCKLLVAV
TQLSLNLQSLS*
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mRNA from alignment at H-paniculata_contig27619:2..596+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27619.7562.1 ID=mRNA_H-paniculata_contig27619.7562.1|Name=mRNA_H-paniculata_contig27619.7562.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=595bp|location=Sequence derived from alignment at H-paniculata_contig27619:2..596+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTAGGCGCCACCCCGGTTCGGCTGAACCAGGTAGGCAGTGTGGGGGTT
GCACCCACTAAAAGACCTCTGGCTAGAATTCCAGTCATGCTCAGTTCATG
AGCTACCCTACCCGTTCGGGCGTAGGTCCGTGGAGGACCTTGTGTTCTCC
ATTATTTCTGGACGCAACCCACTATCGTTCAAGCTCATCGTCCATCCACG
GGAACAAAGCAAGTCCTTCCAGGAGTCTATGCTTAGAGCTCTATATCTAT
GTATCAAATCACTCTCACATAACTGGGAAAAAGAAGGTCTCGTTGCCTCC
AAGCCCCAAGTCCTTGCTGCTATCGTTATTTTCCACGAACACTGTTTTCC
CGAGAGCGATGGCAAAACAAAGGGGCTGTAAGCTTCTCGTTGCTGTGACG
CAGCTCAGCCTCAACCTCCAGTCCCTCTCGTAACCCTTACAAGCTTCGTT
TCTCACGACGGAGCGTAGGCGGGATCAGCGAGAAACGATCGCGTCACTTC
GAGGGATTTCTCAAAGAGATACGTATCTAGCCCGTCCACCTTCCTGCACA
CCCGCGCCTTCACGACCTTGTCTCCGGTACCGCCGCCGCCGCCCT
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Coding sequence (CDS) from alignment at H-paniculata_contig27619:2..596+

>mRNA_H-paniculata_contig27619.7562.1 ID=mRNA_H-paniculata_contig27619.7562.1|Name=mRNA_H-paniculata_contig27619.7562.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig27619:2..596+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCTACCCTACCCGTTCGGGCGTAGGTCCGTGGAGGACCTTGTGTTC
TCCATTATTTCTGGACGCAACCCACTATCGTTCAAGCTCATCGTCCATCC
ACGGGAACAAAGCAAGTCCTTCCAGGAGTCTATGCTTAGAGCTCTATATC
TATGTATCAAATCACTCTCACATAACTGGGAAAAAGAAGGTCTCGTTGCC
TCCAAGCCCCAAGTCCTTGCTGCTATCGTTATTTTCCACGAACACTGTTT
TCCCGAGAGCGATGGCAAAACAAAGGGGCTGTAAGCTTCTCGTTGCTGTG
ACGCAGCTCAGCCTCAACCTCCAGTCCCTCTCGTAAATGAGCTACCCTAC
CCGTTCGGGCGTAGGTCCGTGGAGGACCTTGTGTTCTCCATTATTTCTGG
ACGCAACCCACTATCGTTCAAGCTCATCGTCCATCCACGGGAACAAAGCA
AGTCCTTCCAGGAGTCTATGCTTAGAGCTCTATATCTATGTATCAAATCA
CTCTCACATAACTGGGAAAAAGAAGGTCTCGTTGCCTCCAAGCCCCAAGT
CCTTGCTGCTATCGTTATTTTCCACGAACACTGTTTTCCCGAGAGCGATG
GCAAAACAAAGGGGCTGTAAGCTTCTCGTTGCTGTGACGCAGCTCAGCCT
CAACCTCCAGTCCCTCTCGTAA
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