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Homology
BLAST of mRNA_H-paniculata_contig11178.756.1 vs. uniprot
Match: D8LKF5_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF5_ECTSI) HSP 1 Score: 329 bits (843), Expect = 7.460e-102 Identity = 225/391 (57.54%), Postives = 258/391 (65.98%), Query Frame = 3
Query: 288 MQPSSDEAFWAAVAAQHVAEGSSTAP-WKQTQGGKPSGSK-------------RATGKAAAAGAGNSEH----CALCSDKTPGRWLTRCKGPGGGP---RQQPCSVWVHPACAWQNEEFAMRCIGGSAA-TEECEVR-LPTVFFACPQHDKPATYCSCKREEREDEEGQEDYIECESCNEWYHFSCEGLDEADPPDSYSCKRCRKLAAKGQKVPAGERRRNKAKTNEYMSQMMANKVMQIQQWVAEVKAFAMDDFSDDDFNNENSASSVVDATAASEARYVVMKELIGRKEDLEAPLEEDSDEGDAKAGXXXXXXXXXXXXXXXXXXXXXXXXXX---------EKFFCCQGLEGVYGEAVEMLSELESEAEAMEVAVDTWFDEHRVRYWR 1364
M SSDE FWAAVAAQ EGSST P W+Q P+ +A G AAAA A E CALC DK+ GRW+TRCKG GGG +QQ C++WVHPACAWQNE +AMR I GS+ T + E R LPTVFFACP HDKPATYCSCKREE EDE+G+EDYIECESCNEWYHFSCEGLDE +PP+ YSCKRCR+LAAKGQKVPA ERRRNKAKTNEY+S+M+ANKVMQIQQWV EVK A + + ARY +K+L+ R+E+LEAPLE XXXXXXXXXXXXXXXXXXXXXXXXXX E G+ GVY EA +L + E++ E AVD WFDEH Y++
Sbjct: 1 MLTSSDEDFWAAVAAQVAKEGSSTTPAWRQVGVAPPTSPSSGDSGHGRAGTRGKAKGPAAAASAAEVEAAGVCCALCEDKSEGRWVTRCKGSGGGTGTRQQQTCNIWVHPACAWQNEGYAMRSIAGSSRLTADGEKRRLPTVFFACPLHDKPATYCSCKREEGEDEDGEEDYIECESCNEWYHFSCEGLDEDNPPERYSCKRCRQLAAKGQKVPAQERRRNKAKTNEYLSEMLANKVMQIQQWVKEVKVLAATNTA----XXXXXXXXXXXXXXXXXARYASVKDLLARREELEAPLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDEEDGKVVHGMGGVYAEASALLESVAEESDRAEGAVDEWFDEHPEPYYK 387
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1364 |
| Cds size | 1098 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11178.756.1 >prot_H-paniculata_contig11178.756.1 ID=prot_H-paniculata_contig11178.756.1|Name=mRNA_H-paniculata_contig11178.756.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=366bp
MAVTTADMQPSSDEAFWAAVAAQHVAEGSSTAPWKQTQGGKPSGSKRATG
KAAAAGAGNSEHCALCSDKTPGRWLTRCKGPGGGPRQQPCSVWVHPACAW
QNEEFAMRCIGGSAATEECEVRLPTVFFACPQHDKPATYCSCKREEREDE
EGQEDYIECESCNEWYHFSCEGLDEADPPDSYSCKRCRKLAAKGQKVPAG
ERRRNKAKTNEYMSQMMANKVMQIQQWVAEVKAFAMDDFSDDDFNNENSA
SSVVDATAASEARYVVMKELIGRKEDLEAPLEEDSDEGDAKAGGSGGGGG
KKKGGAGGGGEERGGTVGGEKFFCCQGLEGVYGEAVEMLSELESEAEAME
VAVDTWFDEHRVRYWR back to topmRNA from alignment at H-paniculata_contig11178:2777..8146+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig11178.756.1 ID=mRNA_H-paniculata_contig11178.756.1|Name=mRNA_H-paniculata_contig11178.756.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5370bp|location=Sequence derived from alignment at H-paniculata_contig11178:2777..8146+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAAATTCTGTCCTCAAAACCTGATTCGAAGCACACCTACGTGGTATATC
CAACTGTCGTAAGTTTTCTGTACCGAGTAGTTCCGTGCGTGAGGCCAAAC
AACGGTCAGGATCTTGCCATTCAAGATCCTGGAAGCATATTCCTTTCCGC
GCGACTGTCACGAGTGCCTGATTGTATTTCTAATCTATAGTCGTTATCCA
GCACGGTCGGTGGGCCTGTGCCTGCTGCTCTTTCAACCCAAGGATTACCA
GGAAGGGGGGCACATAATGGTGAGATCCAGTACAGCAGAGAAAGGGAGTA
TCTAGTACTCAATGTCTCGGGGCATATCGCATGGTGTGTAGGGTGTATTT
AGCCTAATACTTGGTGTATATTTGGGGTTGATTTGACAAGCTTGTCCAGC
AGAGACACCATCCATCTCTGCAAACGAGCGATATGTAGGCTGTATATATT
GTACTGTAGTTGCACAACAGCGCGAGCGAGTCCAGGTCACGTGTCCGCAT
ATTTGATTGTTGGCTGAGCTAATATAGGGCTGTGTAATTCCCGTTCTCCA
TGCATGGTAGAGCTTCGATAAATGACTCCCCCGACACGATCAATCCAAAA
ATCGCTGTCCGCGTAGCCCGTCTTATATACAAAAGCCCAGTGCAAACTGA
CTGTGCGTGCTCTCTGTCTAATAATACTGACTGTTGGTAATGTAGTACAG
GGTGACAGTTGTGACAGCGTGCAAGGGGTCAAGACTCAGGACAACGATTG
CATATCTGCTGCATTCGCCCCTGATTGAAGCTCGTTATTAAGCAATGGAG
CTGTACGCTTTCACACACACAGCGAAATGTGGTGCTATTCTCGATCTGTT
TTATAGGTATTCATTATTATATTACAACACGCGAACAAGGTCATTCCTAT
TCACGTATCTGCATATTGGACTGGATGTAACATGCAACGTTAACCGCTTT
GTACCACTGTGCAACAGTACTGTCTTTCTTGAATCGTACTGCACTTCACG
CACCAGAGTACAAATCAAACTGTCGCAGTGCTACCGACCCTGGAAGCTGT
CAGTGAAAAATCCATGCTATTTATAGAAGCTCACACGAGTTTGGCCAGGG
TTGGGGGGATGGGAGCAGTTGTTGGCGTTGAAATAAACTGGAGGTCATGA
CGGCATGGCGAATCCGTGCTCCATGCGCACGTTCGCTGATTTGTGGCTGC
ACAACTGTTTTTTCTCCTTTGCTTGGCTTGGAGTGTGCAGCGCGGTCTCT
TCGCTATTTCGTTTACGTCAGATCGTTTCTTTTCGAAGGAAAGATCGCCT
GGTGTATGTATACATCGCCAATTTTTTGCCTGGGTGCAACGAGCCGCGCT
CACTGAAAATAGTGTTTCGAAGGTGACAACGTGCAGCACCTACAAGTCTC
GCCCACAGAGAACAGGCCACATAGCGACAATCGGCTTTTTGTTTAATGTA
CTGAGTTCCCGTTCTATGTGAGCTGTGTCAATTGGGGAAACGCGGGGTAC
ACCGTGGCCGCTGCACAGCTAACACTGGTGCCGCGTCGGTACTCGTCTGT
ACCAGGTTTTATGATTTCAAAATTTAGCAAAACTTACTTTTGCCGGGACG
GCGAAACCCCGAGAATCCTGAGGAAAGTCCCAAAAGACCATGAGCTTCGC
AGCGCAGCGACCACCAGCCACCCCACGTTCTCCCAGTCGGCACAGGAGTT
CGCTAAATTATGCAGAGTAGTCCGCGTTGATTGTCACTCTGTGATATGCA
TTCTCTGTGACACGACTAAATGCTGCAGGTTGGTATATTCGAAGCACGGA
AAAGGCGATCTCTTGAACCGAGGAAAAAGGTGGTCAAAAGAGGCATTTGC
CAGGCGGCCATATTTTTCCCGATAAGCAGTGCTCCTCACAACCAGGTCGC
GCGCGAGAGACAAAACTGTCAAAAGCGCTATCGTAGTGGTTGATCATTTT
GACATGCTCCAGTGCTTTCGTTGTGGCGATACCGCAAAGGCGATCGAGAG
ACAACCAGGCAGACAGGAGAGACAGAGAACGGCGTGCTTACCCTTGTAGA
CCCACCTTCGAATAAAACGTGAAGAATGTCACAAAAGTTAACGTCTGACT
CTTACATCGTTGCAAGCTGACTCCGCAGTGCTATTTTCAGATATTCTATA
TGTAGTTACCTTCGTGGTTTGTGTCATTAGTTCACAGTTGTTGTTGTAGC
CCGCTTATCCGTTTTGGGTTGGAAATTACTGAAGAGTAAATAGGAATGTG
GGTCCGTTTCCCCCTACTCATTGTTGTGGTCGATGTGTGGAGTCAGAATC
AGCGTTGAACGTGGAATCGGCTGTTCACGGGTAATAATTATCAAAACAAT
GACGACGGGGTCTGCGAGATGACATTTTTGGTGGTGCCCGAAAAATATGC
CTTTTTTTTTTTCGGTTTCATGTCCTGTTCTGCCCTGTCGTGCTGTGATT
TGATGTGTTATGCTGTGTTGGTGTGTGCCCTCTTTCCAGGCGGTGACGAC
CGCCGACATGCAACCGTCCAGCGACGAGGCCTTCTGGGCTGCGGTCGCTG
CGCAGCACGTCGCGGAGGGGTCCAGCACCGCGCCTTGGAAACAAACACAG
GGGGGCAAGCCTTCAGGAAGCAAGAGAGCCACCGGCAAGGCGGCCGCCGC
GGGTGCCGGTAACAGCGAGCACTGCGCGCTTTGCTCGGATAAGACGCCGG
GGCGATGGTTAACCCGGTGTAAAGGTCCCGGCGGAGGACCGCGGCAGCAA
CCGTGCTCCGTGTGGGTCCATCCCGCGTGCGCGTGGCAGGTATGTGGATC
GAAAGAGGAGGGGAAGGTTGCTGTAAATATTTTGGAGGTATGCTCAGCAT
CTTCAAGCTGCTGTATTACTTAGTCATTATCCACCAACTGACTGACCGAA
CTAATGGAGTAGCTACTGGATTACCTTCCATAAACTGAATGAACTAGGAG
GGACGGCTGGGGCGGGCGGTGTATCGGCAGTTTGTGTATTCTGATGTTGT
ACGTGGCGTGCGTAAACGATGAGATGCCATGGTGTTGCAATAGTGGCGCA
AAAGCCATCCGTGACGCCCCTTATTTCCAGTTGGGGTATTTTTGGGTTGG
ACACACAGTGTACATTTTTTGTTCAATTTTGTTTTTGTTCGAACCAAACA
AACGGGATGAAGTTATGCTTCCCCGCCCCACCGACCCCATCCGTCTCCTC
GCTCCGTCCTCTCGAAGATGCGCGGTCAATCATATAACACCTGAGGCATC
TAAACGTGAGTACCCCTCCCCCGCTCCGGCACCTCACCTGCACAGAATGA
AGAGTTTGCCATGCGGTGCATCGGAGGATCTGCAGCGACGGAGGAGTGTG
AGGTACGCCTGCCGACGGTGTTCTTCGCGTGCCCGCAGCACGATAAACCG
GCGACCTATTGCTCGTGCAAGCGGGAGGAACGAGAAGACGAGGAGGGACA
GTAAGTCCTGATTTGTTTTTCGCTGATTCAAAGTAGTTAGTAGAGTGCGT
GTATGTTGTACTACAGTGGGATTTTTTTCGTCGCTCGGACAAAGGATGCA
GTTGGGTGTCATCCTCCAGTGAGAATGTTTTGGTTGCCGACAGAGAATTA
GTTAGGTGTCATTACTTCAATGGGAGTTTTTGTTGTTGCAGATAATAGAT
TTATTTTGGGTGTCATACTCCAATGGATTTTCTTCGTCACCGACAGAGGA
TTGAGTTGGGTGTCGTACTCCAGTAGGGTGTTTTTCGTCGCAGACAGTAA
ATTTTATTGGATGTCGTACTCCAGTGGGGTGTTTTCGTCGTCGACTGTTA
ATAATGCCCTTGTGTCTTGCTCCAGCAAGATTTTCGTCACCGACGGTGAA
ATCAGTTGTAAGCCCTCTTGGGGTAATCACGAAAGCAGCGGTTGTTGGGC
AACAAGATCATAGCATGGTGAAAACGTTCAATTCAGCCCGCCGTAGAGTA
CCAAAACCCTCGTTTGTTTTGAATTGATTAGTGTTTCCGCGCCCTTGCCC
CCCTCAGCCAACTCCCCATCCCTTTCTGGGTATTTATCAATGTCGTTGTT
GGTGGTGTGTGCCCGTATGCCTGTCTACCCCGGTCCAATTCAACCATCAC
CACTCTAAACACAACACAACGCTTGCATCCATCATGTGGCTGCTGCACCC
CAACACAGGGAGGATTACATCGAGTGCGAAAGCTGCAATGAATGGTATCA
TTTTTCTTGCGAAGGCCTCGACGAGGCCGACCCCCCGGACAGCTACAGCT
GCAAACGCTGCCGGAAACTCGCCGCAAAAGGACAGAAGGTCCCCGCCGGA
GAGCGTCGTAGGAACAAGGCCAAAACCAACGAGTACATGAGTCAGATGGT
GCGTGAATGCTCCGCCCCGGATGGCGTGTGTTGACGGATTATGTCACTTC
CGGGTTATGTATATGTGTGTTTGTGTGTTCTGCAAAAAATCGGTTTTATC
GGGAGAGCCAGACCCGAGACTTTGTCGAAAGAGCATGATTGTCGGTGTTG
GCGTGAGTTTATTGCCGAAATTTACTGTGCATTATTCGTAAAACCATGTC
GGCCACCCCCTTCCCCCGTTTCCAAAGTTCTAGATTTTTGTGCAGTACTT
ACAGATTTTTGCTGAAGAAAGTTTAAACTCCACCTTCTATTCAAATGCAC
TGCTTTTTGTCGCGATGAATGTTTGTCGCTCATGTTTCTGTGTTTCAATT
CAAGTATATGGTATTGCTTTTAACATCCCAGTCACCCCCTTCACATACAC
CCCACCGCCTTTCCCTTCCTTCGGACTTGACAATCGGTGATGCGTACATA
TAGTCATGATCCATGATCATGGTTCTGGGCGAAATAAATAGCCGCAGCAT
TAACCATATTTACGTTGTAAACTAGAGTATCTAAAGGTCACCCCCCCTTC
CCTCCCCCCCCCCAAAAAAGATGGCCAACAAGGTAATGCAGATCCAGCAA
TGGGTAGCCGAGGTTAAAGCCTTCGCGATGGATGACTTCTCGGATGATGA
TTTCAACAACGAAAACTCAGCATCATCGGTCGTGGACGCTACTGCCGCTA
GCGAAGCCCGCTACGTCGTTATGAAGGAGCTCATCGGTCGAAAAGAGGAC
CTGGAGGCACCCTTGGAGGAGGACTCTGATGAGGGAGATGCGAAGGCAGG
AGGGAGCGGGGGGGGGGGCGGCAAGAAGAAGGGTGGAGCCGGAGGCGGGG
GGGAGGAGAGGGGAGGAACGGTGGGCGGGGAAAAGTTTTTTTGCTGTCAG
GGGTTGGAAGGCGTGTACGGAGAAGCGGTGGAGATGCTGTCGGAGCTGGA
GAGCGAGGCGGAGGCGATGGAAGTGGCGGTTGATACCTGGTTTGACGAGC
ACAGGGTGAGATATTGGAGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig11178:2777..8146+ >mRNA_H-paniculata_contig11178.756.1 ID=mRNA_H-paniculata_contig11178.756.1|Name=mRNA_H-paniculata_contig11178.756.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2196bp|location=Sequence derived from alignment at H-paniculata_contig11178:2777..8146+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGCGGTGACGACCGCCGACATGCAACCGTCCAGCGACGAGGCCTT
CTGGGCTGCGGTCGCTGCGCAGCACGTCGCGGAGGGGTCCAGCACCGCGC
CTTGGAAACAAACACAGGGGGGCAAGCCTTCAGGAAGCAAGAGAGCCACC
GGCAAGGCGGCCGCCGCGGGTGCCGGTAACAGCGAGCACTGCGCGCTTTG
CTCGGATAAGACGCCGGGGCGATGGTTAACCCGGTGTAAAGGTCCCGGCG
GAGGACCGCGGCAGCAACCGTGCTCCGTGTGGGTCCATCCCGCGTGCGCG
TGGCAGGCGGTGACGACCGCCGACATGCAACCGTCCAGCGACGAGGCCTT
CTGGGCTGCGGTCGCTGCGCAGCACGTCGCGGAGGGGTCCAGCACCGCGC
CTTGGAAACAAACACAGGGGGGCAAGCCTTCAGGAAGCAAGAGAGCCACC
GGCAAGGCGGCCGCCGCGGGTGCCGGTAACAGCGAGCACTGCGCGCTTTG
CTCGGATAAGACGCCGGGGCGATGGTTAACCCGGTGTAAAGGTCCCGGCG
GAGGACCGCGGCAGCAACCGTGCTCCGTGTGGGTCCATCCCGCGTGCGCG
TGGCAGAATGAAGAGTTTGCCATGCGGTGCATCGGAGGATCTGCAGCGAC
GGAGGAGTGTGAGGTACGCCTGCCGACGGTGTTCTTCGCGTGCCCGCAGC
ACGATAAACCGGCGACCTATTGCTCGTGCAAGCGGGAGGAACGAGAAGAC
GAGGAGGGACAAATGAAGAGTTTGCCATGCGGTGCATCGGAGGATCTGCA
GCGACGGAGGAGTGTGAGGTACGCCTGCCGACGGTGTTCTTCGCGTGCCC
GCAGCACGATAAACCGGCGACCTATTGCTCGTGCAAGCGGGAGGAACGAG
AAGACGAGGAGGGACAGGAGGATTACATCGAGTGCGAAAGCTGCAATGAA
TGGTATCATTTTTCTTGCGAAGGCCTCGACGAGGCCGACCCCCCGGACAG
CTACAGCTGCAAACGCTGCCGGAAACTCGCCGCAAAAGGACAGAAGGTCC
CCGCCGGAGAGCGTCGTAGGAACAAGGCCAAAACCAACGAGTACATGAGT
CAGATGGGAGGATTACATCGAGTGCGAAAGCTGCAATGAATGGTATCATT
TTTCTTGCGAAGGCCTCGACGAGGCCGACCCCCCGGACAGCTACAGCTGC
AAACGCTGCCGGAAACTCGCCGCAAAAGGACAGAAGGTCCCCGCCGGAGA
GCGTCGTAGGAACAAGGCCAAAACCAACGAGTACATGAGTCAGATGATGG
CCAACAAGGTAATGCAGATCCAGCAATGGGTAGCCGAGGTTAAAGCCTTC
GCGATGGATGACTTCTCGGATGATGATTTCAACAACGAAAACTCAGCATC
ATCGGTCGTGGACGCTACTGCCGCTAGCGAAGCCCGCTACGTCGTTATGA
AGGAGCTCATCGGTCGAAAAGAGGACCTGGAGGCACCCTTGGAGGAGGAC
TCTGATGAGGGAGATGCGAAGGCAGGAGGGAGCGGGGGGGGGGGCGGCAA
GAAGAAGGGTGGAGCCGGAGGCGGGGGGGAGGAGAGGGGAGGAACGGTGG
GCGGGGAAAAGTTTTTTTGCTGTCAGGGGTTGGAAGGCGTGTACGGAGAA
GCGGTGGAGATGCTGTCGGAGCTGGAGAGCGAGGCGGAGGCGATGGAAGT
GGCGGTTGATACCTGGTTTGACGAGCACAGGGTGAGATATTGGAGAATGG
CCAACAAGGTAATGCAGATCCAGCAATGGGTAGCCGAGGTTAAAGCCTTC
GCGATGGATGACTTCTCGGATGATGATTTCAACAACGAAAACTCAGCATC
ATCGGTCGTGGACGCTACTGCCGCTAGCGAAGCCCGCTACGTCGTTATGA
AGGAGCTCATCGGTCGAAAAGAGGACCTGGAGGCACCCTTGGAGGAGGAC
TCTGATGAGGGAGATGCGAAGGCAGGAGGGAGCGGGGGGGGGGGCGGCAA
GAAGAAGGGTGGAGCCGGAGGCGGGGGGGAGGAGAGGGGAGGAACGGTGG
GCGGGGAAAAGTTTTTTTGCTGTCAGGGGTTGGAAGGCGTGTACGGAGAA
GCGGTGGAGATGCTGTCGGAGCTGGAGAGCGAGGCGGAGGCGATGGAAGT
GGCGGTTGATACCTGGTTTGACGAGCACAGGGTGAGATATTGGAGA back to top
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