mRNA_H-paniculata_contig27603.7556.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27603.7556.1
Unique NamemRNA_H-paniculata_contig27603.7556.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27603.7556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27603contigH-paniculata_contig27603:336..1095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size762
Cds size477
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929835.120476-CDS-H-paniculata_contig27603:335..8121622929835.120476-CDS-H-paniculata_contig27603:335..812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27603 336..812 +
1691481031.9620352-CDS-H-paniculata_contig27603:335..8121691481031.9620352-CDS-H-paniculata_contig27603:335..812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27603 336..812 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929835.1325698-UTR-H-paniculata_contig27603:812..10951622929835.1325698-UTR-H-paniculata_contig27603:812..1095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27603 813..1095 +
1691481031.9710858-UTR-H-paniculata_contig27603:812..10951691481031.9710858-UTR-H-paniculata_contig27603:812..1095Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27603 813..1095 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27603.7556.1prot_H-paniculata_contig27603.7556.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27603 336..812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27603.7556.1

>prot_H-paniculata_contig27603.7556.1 ID=prot_H-paniculata_contig27603.7556.1|Name=mRNA_H-paniculata_contig27603.7556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
RGRLSHLGWLLECACVACYSTNHRPKGFCLHACRSNNPTTASFSSYLPCF
IFGLLRVLPSTSGYLSTHTYALCAVFRTPMDDNNTIYTMGHQITDRSTLP
LLVPEKQTHTVCCVWARVPILTTQKWNMTYNNMNGASWTRSPLERMFYFM
VAAGRLIV*
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mRNA from alignment at H-paniculata_contig27603:336..1095+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27603.7556.1 ID=mRNA_H-paniculata_contig27603.7556.1|Name=mRNA_H-paniculata_contig27603.7556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=760bp|location=Sequence derived from alignment at H-paniculata_contig27603:336..1095+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGGGAGACTCTCTCATCTCGGATGGCTACTTGAATGTGCTTGTGTTGC
GTGTTACTCGACTAACCACCGCCCTAAAGGTTTTTGCCTACATGCCTGCC
GCTCAAATAACCCCACCACTGCGTCCTTCTCTTCGTATCTCCCTTGCTTT
ATTTTCGGCCTTCTCCGGGTACTACCCTCAACCTCCGGGTATCTCTCCAC
ACACACATACGCTTTGTGTGCTGTATTTCGTACGCCTATGGACGACAACA
ATACAATCTACACTATGGGGCACCAAATCACCGATCGATCTACGTTACCT
CTGCTGGTGCCGGAAAAACAAACGCACACCGTATGTTGTGTGTGGGCGAG
GGTGCCAATTTTAACAACACAAAAATGGAATATGACGTATAATAACATGA
ATGGTGCATCATGGACGCGGTCCCCGTTGGAACGTATGTTTTATTTCATG
GTGGCTGCCGGGCGATTGATTGTGTGATTGACGGGGGTGTGCTTCACTGG
CGCGACACCTGAAACTCACTCAAAACGAAACAATAGTTGTTTTTGGGAGA
ATGGTTGGAGGTACCCATGCCACTGGCACTGTGCGTCGCCAGTGTTGTAG
TGTGCTACGTGGAGGCGATGGTAACGGGCTCTGAAGGCGGGGGGCGAAAG
GTCAAAGCCAATTAGATCATAGATACTAGGTACGATGAACATAGCAGAGC
GGAGGATACCTGGCCGGATTACAGCAGCTATTTTTGATTTTTCGCGCGCG
CTCGGGGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig27603:336..1095+

>mRNA_H-paniculata_contig27603.7556.1 ID=mRNA_H-paniculata_contig27603.7556.1|Name=mRNA_H-paniculata_contig27603.7556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig27603:336..1095+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGGGAGACTCTCTCATCTCGGATGGCTACTTGAATGTGCTTGTGTTGC
GTGTTACTCGACTAACCACCGCCCTAAAGGTTTTTGCCTACATGCCTGCC
GCTCAAATAACCCCACCACTGCGTCCTTCTCTTCGTATCTCCCTTGCTTT
ATTTTCGGCCTTCTCCGGGTACTACCCTCAACCTCCGGGTATCTCTCCAC
ACACACATACGCTTTGTGTGCTGTATTTCGTACGCCTATGGACGACAACA
ATACAATCTACACTATGGGGCACCAAATCACCGATCGATCTACGTTACCT
CTGCTGGTGCCGGAAAAACAAACGCACACCGTATGTTGTGTGTGGGCGAG
GGTGCCAATTTTAACAACACAAAAATGGAATATGACGTATAATAACATGA
ATGGTGCATCATGGACGCGGTCCCCGTTGGAACGTATGTTTTATTTCATG
GTGGCTGCCGGGCGATTGATTGTGTGACGGGGGAGACTCTCTCATCTCGG
ATGGCTACTTGAATGTGCTTGTGTTGCGTGTTACTCGACTAACCACCGCC
CTAAAGGTTTTTGCCTACATGCCTGCCGCTCAAATAACCCCACCACTGCG
TCCTTCTCTTCGTATCTCCCTTGCTTTATTTTCGGCCTTCTCCGGGTACT
ACCCTCAACCTCCGGGTATCTCTCCACACACACATACGCTTTGTGTGCTG
TATTTCGTACGCCTATGGACGACAACAATACAATCTACACTATGGGGCAC
CAAATCACCGATCGATCTACGTTACCTCTGCTGGTGCCGGAAAAACAAAC
GCACACCGTATGTTGTGTGTGGGCGAGGGTGCCAATTTTAACAACACAAA
AATGGAATATGACGTATAATAACATGAATGGTGCATCATGGACGCGGTCC
CCGTTGGAACGTATGTTTTATTTCATGGTGGCTGCCGGGCGATTGATTGT
GTGA
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