mRNA_H-paniculata_contig276.7552.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig276.7552.1
Unique NamemRNA_H-paniculata_contig276.7552.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig276.7552.1 vs. uniprot
Match: D7G5B1_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B1_ECTSI)

HSP 1 Score: 803 bits (2073), Expect = 5.440e-283
Identity = 392/533 (73.55%), Postives = 456/533 (85.55%), Query Frame = 1
Query:    1 MDSSSTLNSAPTNALTLTWAFGFNKDVVDGVHSLCADGREALFYVAAHTGVIYDYTRRTQELLQGHCNPITAVAVSNNKKWVVTADAGPDSMMVVWDTASGTPIKSIFNPHSNGVLGIDISSEALYIVTLSAPTLLKNGSSEPQTISLWEWTHPEREDALFTSVIEEPDLQKVVRFNLSNTRHIMTTGERKTMFWGWEDGGLRGYVPRISRHDFKRGKGVYTSCCFLPGTTQAITATSNGEIVLWEEVPVDAVDGVSQSGSVADRNLTAETAQLLLYRPKRQAIKILKLCDGLIAHISTIAGGNDAGGIDRVANMDRVLDSSSGGGSG-------AGSTTYIVVAGEDGAVRFYDLKFRVEAWFEDFGAGGVTSVSFATQLPSRRKGNSAS-FRVPDFVVGTTRAYVVACAASAFEELDPERRRGSVLVQGMVGSINCIAAHPLLPRLAVLCDSGDIQLWDYDLKVLMTLRSFDPARLRPQSCAFHPRGNLLAVGFSSGACKILDATNLEEVAGFRYTLASLNSVRFSPDGEM 1575
            MDSSSTLNS  TNALTL W+FGFNKDVVDGVHSLC+DGR+ALF+VAAHTGVIYDY +RTQ+LLQGHCN I AVAVS+NKKWVVTADAG DSM+VVWDTASG PIKSIFNPH  GV+ +DIS +AL+IVTLSAP   ++ +  PQTIS+WEWTHPERE+ALFTSVI+EPD+QKVV+FN S+ RHI+TTG+RKTMFWGWEDGGLRGY+PR+SRHDFK+G GVYTSCCFLPGTTQAIT TS GEIV+W+EV   +  GV+ +G+  + + + E+AQLLL+RPKRQA+K+LKLCDG I H+ST+AGG+ A       + +    +  G GSG       AG+  Y+V AGEDGAVRFYDLKFR+EAWFEDF AGGVTSVSFA +LP R KG + S FRVPDFVVGT RAYVVACAASAFEELDPERRRGSVLVQGMVGS+ C+AAHPLLPRL +LC+SGD+ LWDY+LKVL+TLRSFDPARLRPQ+CAFHP+G LLA+GFSSGACKILDAT+LEEVA FRY+  SL++VRFSPDGEM
Sbjct:    1 MDSSSTLNSLATNALTLNWSFGFNKDVVDGVHSLCSDGRQALFFVAAHTGVIYDYAKRTQDLLQGHCNCICAVAVSHNKKWVVTADAGQDSMLVVWDTASGIPIKSIFNPHPKGVIAMDISPDALFIVTLSAPAPAESENDSPQTISIWEWTHPEREEALFTSVIDEPDVQKVVKFNSSDIRHIVTTGDRKTMFWGWEDGGLRGYIPRMSRHDFKKGNGVYTSCCFLPGTTQAITVTSIGEIVVWDEVQTTS-KGVNGAGNAGEPDGSLESAQLLLHRPKRQAVKVLKLCDGAITHVSTVAGGSPA------VDDECATHAEDGPGSGDVGVDSAAGAAMYVVTAGEDGAVRFYDLKFRLEAWFEDFTAGGVTSVSFAAKLPPRAKGGADSAFRVPDFVVGTNRAYVVACAASAFEELDPERRRGSVLVQGMVGSVACVAAHPLLPRLVILCESGDVHLWDYNLKVLVTLRSFDPARLRPQNCAFHPQGTLLAIGFSSGACKILDATDLEEVASFRYSSTSLSTVRFSPDGEM 526          
BLAST of mRNA_H-paniculata_contig276.7552.1 vs. uniprot
Match: A0A397D0A3_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D0A3_9STRA)

HSP 1 Score: 421 bits (1081), Expect = 1.460e-134
Identity = 225/514 (43.77%), Postives = 311/514 (60.51%), Query Frame = 1
Query:   37 NALTLTWAFGFNKDVVDGVHSLCADGREALFYVAAHTGVIYDYTRRTQELLQGHCNPITAVAVSNNKKWVVTADAGPDSMMVVWDTASGTPIKSIFNPHSNGVLGIDISSEALYIVTLSAPTLLKNGSSEPQTISLWEWTHPEREDALFTSVIEEPDLQKVVRFNLSNTRHIMTTGERKTMFWGWEDGGLRGYVPRISRHDFKRGKGVYTSCCFLPGTTQAITATSNGEIVLWEEVPVDAVDGVSQSGSVADRNLTAETAQLLLYRPKRQAIKILKLCDGLIAHISTIAGGNDAGGIDRVANMDRVLDSSSGGGSGAGSTTYIVVAGEDGAVRFYDLKFRVEAWFEDFGAGGVTSVSFATQLPSRRKGNSASFRVPDFVVGTTRAYVVACAASAFEELDPERRRGSVLVQGMVGSINCIAAHPLLPRLAVLCDSGDIQLWDYDLKVLMTLRSFDPARLRPQSCAFHPRGNLLAVGFSSGACKILDATNLEEVAGFRYTLASLNSVRFSPDGEMV 1578
            NAL+L+W+FGFNKD+V GVHSL  D   A+FY A HTGVIY+Y  RTQ+LLQGHCNPI+  AVS +K+W+VTAD G DSM+VVWD  +G PIK+IFNPHS+GV  +D+S +A++IVTLS      N     Q I LWEWT   R+DAL+ + +   D+Q  VRFN  + R +MT G ++ +FW W    L+ Y P +S+ DFK+  G +T   F+P ++QAITAT +G+++LW+  PV A             N T   A        ++AIKI++           + G +    ++ +A+MD                 Y+V+   DGAVRFYD  FR+ AWFED  AG V +VSFA         ++  F VP+F+V T+ A+++    S  +E D E+RRG++L+QG+   I+ +AAHP    +AV C SG IQLWDY  K L+ LRSFD  +LRPQ   +HP G  L VGF++G  KI+ AT LE+V  FR    ++  V+ + DG  +
Sbjct:   10 NALSLSWSFGFNKDIVGGVHSLSDDTVHAIFYTAGHTGVIYNYANRTQKLLQGHCNPISCCAVSEDKRWIVTADRGQDSMLVVWDATTGNPIKTIFNPHSDGVQCLDMSPDAMFIVTLSIAMDKANLKEHAQEIKLWEWTVA-RDDALYVAAVTTEDVQTCVRFNTYDVRELMTNGAQRVIFWNWAAHQLQFYSPPLSQKDFKQTIGAFTQSLFVPDSSQAITATVDGDLILWDAAPVKA-------------NATTAHAD-------KKAIKIVR-----------VTGHDKPVAVNFLADMDG----------------YLVMGCADGAVRFYDFDFRLVAWFEDLCAGPVMAVSFANV--DAAPASADVFTVPEFIVSTSSAFILGITPSIHDEYDVEKRRGTLLMQGINDEIHGLAAHPASNHIAVSCYSGAIQLWDYVGKRLVMLRSFDRDKLRPQCLTYHPSGKHLLVGFTNGTIKIISATTLEDVTTFRQAKNAIVDVKIAADGSFI 473          
BLAST of mRNA_H-paniculata_contig276.7552.1 vs. uniprot
Match: W4H2Q6_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H2Q6_9STRA)

HSP 1 Score: 420 bits (1080), Expect = 4.020e-134
Identity = 225/514 (43.77%), Postives = 311/514 (60.51%), Query Frame = 1
Query:   37 NALTLTWAFGFNKDVVDGVHSLCADGREALFYVAAHTGVIYDYTRRTQELLQGHCNPITAVAVSNNKKWVVTADAGPDSMMVVWDTASGTPIKSIFNPHSNGVLGIDISSEALYIVTLSAPTLLKNGSSEPQTISLWEWTHPEREDALFTSVIEEPDLQKVVRFNLSNTRHIMTTGERKTMFWGWEDGGLRGYVPRISRHDFKRGKGVYTSCCFLPGTTQAITATSNGEIVLWEEVPVDAVDGVSQSGSVADRNLTAETAQLLLYRPKRQAIKILKLCDGLIAHISTIAGGNDAGGIDRVANMDRVLDSSSGGGSGAGSTTYIVVAGEDGAVRFYDLKFRVEAWFEDFGAGGVTSVSFATQLPSRRKGNSASFRVPDFVVGTTRAYVVACAASAFEELDPERRRGSVLVQGMVGSINCIAAHPLLPRLAVLCDSGDIQLWDYDLKVLMTLRSFDPARLRPQSCAFHPRGNLLAVGFSSGACKILDATNLEEVAGFRYTLASLNSVRFSPDGEMV 1578
            NAL+L+W+FGFNKD+V GVHSL  D   A+FY A HTGVIY+Y  RTQ+LLQGHCNPI+  AVS +K+W+VTAD G DSM+VVWD  +G PIK+IFNPHS+GV  +D+S +A++IVTLS      N     Q I LWEWT   R+DAL+ + +   D+Q  VRFN  + R +MT G ++ +FW W    L+ Y P +S+ DFK+  G +T   F+P ++QAITAT +G+++LW+  PV A             N T   A        ++AIKI++           + G +    ++ +A+MD                 Y+V+   DGAVRFYD  FR+ AWFED  AG V +VSFA         ++  F VP+F+V T+ A+++    S  +E D E+RRG++L+QG+   I+ +AAHP    +AV C SG IQLWDY  K L+ LRSFD  +LRPQ   +HP G  L VGF++G  KI+ AT LE+V  FR    ++  V+ + DG  +
Sbjct:   10 NALSLSWSFGFNKDIVGGVHSLSDDTVHAIFYTAGHTGVIYNYANRTQKLLQGHCNPISCCAVSEDKRWIVTADRGQDSMLVVWDATTGNPIKTIFNPHSDGVQCLDMSPDAMFIVTLSIAMDKANVKEHAQEIKLWEWTVA-RDDALYVAAVTTEDVQTCVRFNTYDVRELMTNGAQRVIFWNWAAHQLQFYSPPLSQKDFKQTIGAFTQSLFVPDSSQAITATVDGDLILWDAAPVKA-------------NATTIHAD-------KKAIKIVR-----------VTGHDKPVAVNFLADMDG----------------YLVMGCADGAVRFYDFDFRLVAWFEDLCAGPVMAVSFANV--DAAPASADVFTVPEFIVSTSSAFILGITPSIHDEYDVEKRRGTLLMQGINDEIHGLAAHPASNHIAVSCYSGAIQLWDYVGKRLVMLRSFDRDKLRPQCLTYHPSGKHLLVGFTNGTIKIISATTLEDVTTFRQAKNAIVDVKIAADGSFI 473          
BLAST of mRNA_H-paniculata_contig276.7552.1 vs. uniprot
Match: A0A418AVL0_9STRA (C2 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AVL0_9STRA)

HSP 1 Score: 419 bits (1078), Expect = 1.040e-132
Identity = 223/514 (43.39%), Postives = 309/514 (60.12%), Query Frame = 1
Query:   37 NALTLTWAFGFNKDVVDGVHSLCADGREALFYVAAHTGVIYDYTRRTQELLQGHCNPITAVAVSNNKKWVVTADAGPDSMMVVWDTASGTPIKSIFNPHSNGVLGIDISSEALYIVTLSAPTLLKNGSSEPQTISLWEWTHPEREDALFTSVIEEPDLQKVVRFNLSNTRHIMTTGERKTMFWGWEDGGLRGYVPRISRHDFKRGKGVYTSCCFLPGTTQAITATSNGEIVLWEEVPVDAVDGVSQSGSVADRNLTAETAQLLLYRPKRQAIKILKLCDGLIAHISTIAGGNDAGGIDRVANMDRVLDSSSGGGSGAGSTTYIVVAGEDGAVRFYDLKFRVEAWFEDFGAGGVTSVSFATQLPSRRKGNSASFRVPDFVVGTTRAYVVACAASAFEELDPERRRGSVLVQGMVGSINCIAAHPLLPRLAVLCDSGDIQLWDYDLKVLMTLRSFDPARLRPQSCAFHPRGNLLAVGFSSGACKILDATNLEEVAGFRYTLASLNSVRFSPDGEMV 1578
            NAL+L+W+FGFNKD+V GVHSL  D   A+FY A HTGVIY+Y  RTQ+LLQGHCNPI+   VS +K+W+VTAD G DSM+VVWD  +G PIK+IFNPH +GV  +D+S +A++IVTLS  T   N     Q I LWEWT   R+DAL+ + +   D+Q  VRFN  + R IMT G ++ +FW W    L+ Y P +S+ DFK+  G +T   F+P ++QAITAT +G+++LW+  PV                   +T    L    ++A KI+++            G +    I+ +A+MD                 Y+V+   DGAVRFYD  FR+ AW+ED  AG V +VSFA         ++ +F VP+F+V T+ A+++    S  +E D E+RRG++L+QG+   I+ +AAHP    +AV C SG IQLWDY  K L+ LRSFD  +LRPQ   +HP G  L VGF++G  KI+ A+ LE+VA FR     +  V+ + DG  V
Sbjct:  130 NALSLSWSFGFNKDIVGGVHSLSDDTVHAVFYTAGHTGVIYNYANRTQKLLQGHCNPISCCTVSEDKRWIVTADKGQDSMLVVWDATTGNPIKTIFNPHVDGVQCLDLSPDAMFIVTLSIATDKSNRKEHAQEIKLWEWTVA-RDDALYVAAVTTEDVQTCVRFNTYDIREIMTNGAQRVIFWNWAAHQLQFYSPPLSQKDFKQTIGAFTQSLFVPDSSQAITATVDGDLILWDAAPV-------------------KTNASTLVHADKKATKIVRM-----------TGHDKPMAINFLADMDG----------------YLVMGCADGAVRFYDFDFRLVAWYEDMCAGPVVAVSFANV--DATPASADAFTVPEFIVSTSNAFILGITPSIHDEYDVEKRRGTLLMQGINDEIHGLAAHPATSHIAVSCYSGTIQLWDYVGKRLVMLRSFDSDKLRPQCLTYHPSGKHLLVGFTNGTIKIVHASTLEDVATFRQARNPIVDVKIAADGSFV 594          
BLAST of mRNA_H-paniculata_contig276.7552.1 vs. uniprot
Match: A0A662WL71_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WL71_9STRA)

HSP 1 Score: 416 bits (1070), Expect = 3.270e-131
Identity = 231/550 (42.00%), Postives = 317/550 (57.64%), Query Frame = 1
Query:   37 NALTLTWAFGFNKDVVDGVHSLCADGREALFYVAAHTGVIYDYTRRTQELLQGHCNPITAVAVSNNKKWVVTADAGPDSMMVVWDTASGTPIKSIFNPHSNGVLGIDISSEALYIVTLSAPTLLKNGSSEP-------------QTISLWEWTHPEREDA----LFTSVIEEPDLQKVVRFNLSNTRHIMTTGERKTMFWGWEDGGLRGYVPRISRHDFKRGKGVYTSCCFLPGTTQAITATSNGEIVLWEEVPVDAVDGVSQSGSVADRNLTAETAQLLLYRPKRQAIKILKLCDGLIAHISTIAGGNDAGGIDRVANMDRVLDSSSGGGSGAGSTTYIVVAGEDGAVRFYDLKFRVEAWFEDFGAGGVTSVSFATQLPSRRKGNSAS--------------------FRVPDFVVGTTRAYVVACAASAFEELDPERRRGSVLVQGMVGSINCIAAHPLLPRLAVLCDSGDIQLWDYDLKVLMTLRSFDPARLRPQSCAFHPRGNLLAVGFSSGACKILDATNLEEVAGFRYTLASLNSVRFSPDGEM 1575
            NAL L WAFGF KD+V+GVHSL    R A+FY AAHTGVIYDY RR Q LLQGHC+PI+   VS +K+W+VTAD G +SM+VVWD +SG PI++IF PH+ GV  +DIS +AL++VTLSA    +    EP             Q +++WEW  P    A    L++S++   D+Q  VRFN  + R ++TTG ++ +FW W    L  Y P +++ DF++  G +T   F+P +TQA+T T +G++VLW+ V  D+   V  S                   P+R+AIKI++L  G+               +  +A+MD                 Y+V+   DGAVRFYD  FR+ AWFED  AG +TSVSFA  LP+   G S S                    F+VPDFVV T+ A++V   A+ F E +PERRRG++L+QG+  SI+ +AAHP L +LA+   SG +QLWDY  K L+ +R FD  +LRPQ   F   G  L VGF+SG  K+L A  L+++A FR   A++  VR SPD  +
Sbjct:   52 NALRLAWAFGFQKDLVNGVHSLSTGSRRAVFYAAAHTGVIYDYARRQQRLLQGHCHPISCCVVSEDKRWIVTADRGHESMLVVWDASSGNPIRTIFRPHAKGVQALDISPDALFLVTLSAVDREEEEDVEPGSAKKAADRERFDQELAVWEWAAPASGAAASKPLYSSLVATEDVQHAVRFNTYDVRELVTTGRQRVVFWSWAARTLLFYSPSLAQKDFRQVVGAFTQSLFVPDSTQALTGTEDGDLVLWDAVQSDSGAEVPASSF-----------------PERKAIKIVRLAGGVEPQRKV--------SLTVIADMDG----------------YLVLGSSDGAVRFYDFDFRLVAWFEDMNAGSITSVSFA--LPTSPNGGSNSPADSRRQPPRSDXXXXDGEAFQVPDFVVATSSAFIVGMHAALFAEHEPERRRGTLLMQGINDSIHGLAAHPTLMQLALSSYSGVVQLWDYAAKRLVMVRRFDSEKLRPQCLVFARDGRKLLVGFTSGVVKVLHAQRLDDLASFRLGKAAITDVRVSPDSSL 558          
BLAST of mRNA_H-paniculata_contig276.7552.1 vs. uniprot
Match: A0A6G0XN73_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XN73_9STRA)

HSP 1 Score: 412 bits (1058), Expect = 5.900e-131
Identity = 218/514 (42.41%), Postives = 317/514 (61.67%), Query Frame = 1
Query:   37 NALTLTWAFGFNKDVVDGVHSLCADGREALFYVAAHTGVIYDYTRRTQELLQGHCNPITAVAVSNNKKWVVTADAGPDSMMVVWDTASGTPIKSIFNPHSNGVLGIDISSEALYIVTLSAPTLLKNGSSEPQTISLWEWTHPEREDALFTSVIEEPDLQKVVRFNLSNTRHIMTTGERKTMFWGWEDGGLRGYVPRISRHDFKRGKGVYTSCCFLPGTTQAITATSNGEIVLWEEVPVDAVDGVSQSGSVADRNLTAETAQLLLYRPKRQAIKILKLCDGLIAHISTIAGGNDAGGIDRVANMDRVLDSSSGGGSGAGSTTYIVVAGEDGAVRFYDLKFRVEAWFEDFGAGGVTSVSFATQLPSRRKGNSASFRVPDFVVGTTRAYVVACAASAFEELDPERRRGSVLVQGMVGSINCIAAHPLLPRLAVLCDSGDIQLWDYDLKVLMTLRSFDPARLRPQSCAFHPRGNLLAVGFSSGACKILDATNLEEVAGFRYTLASLNSVRFSPDGEMV 1578
            NAL+++W+FGFNKD+V+GVH+L  D   A+FY A HTGVIYDY  RTQ+LLQGHCNPI+  AVS +K+W+VTAD G DSM+VVWD  +  PIK+IFNPH +GV  +DIS +A++IVTLS      + S + Q I LWEWT   RE+AL+++ +   D+Q  VRFN  + R ++T G ++ +FW W    L+ Y P +S+ DFK+  G +T   F+P ++QAITAT +G+++LW+   V      + + S AD+                +A+KI+++      H +T         I+ + +MD                 Y+V+   DGAVRFYD  FR+ AWFED  AG V SVSFA    S    +  SFRVP+F+V T+ A+++    S  EE D E+RRG++L+QG+   I+ +AAHP   ++AV C SG +Q+WDY  K L+ +R+FD  +LRPQ   ++P G  + VGF++G  KI+DA +L++VA FR   + +  V+ + D   +
Sbjct:    9 NALSMSWSFGFNKDIVNGVHNLSDDNVHAIFYTAGHTGVIYDYANRTQKLLQGHCNPISCCAVSEDKRWIVTADRGQDSMLVVWDATTANPIKTIFNPHLDGVQCVDISPDAMFIVTLSVGRAKNDKSEQAQEIKLWEWTVA-REEALYSAAVATEDVQTCVRFNTYDIRELVTNGPQRVIFWNWAHHQLQFYSPPLSQKDFKQTIGAFTQSLFVPDSSQAITATEDGDLILWDTAQVQT----ATTSSHADK----------------KAVKIVRMT----GHETTPIA------INFLTDMDG----------------YLVMGCADGAVRFYDFDFRLVAWFEDLCAGPVQSVSFANVDMSPEVDDD-SFRVPEFIVATSHAFILGITPSTHEEYDVEKRRGTLLMQGINDDIHGLAAHPTASQIAVSCYSGAVQVWDYVAKRLVMMRTFD--KLRPQCLTYNPTGKQVLVGFTNGTVKIVDAVSLDDVATFRPAKSPVVEVKIAQDSSFI 472          
BLAST of mRNA_H-paniculata_contig276.7552.1 vs. uniprot
Match: W2QWE4_PHYPN (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=W2QWE4_PHYPN)

HSP 1 Score: 414 bits (1064), Expect = 1.400e-130
Identity = 226/539 (41.93%), Postives = 311/539 (57.70%), Query Frame = 1
Query:   37 NALTLTWAFGFNKDVVDGVHSLCADGREALFYVAAHTGVIYDYTRRTQELLQGHCNPITAVAVSNNKKWVVTADAGPDSMMVVWDTASGTPIKSIFNPHSNGVLGIDISSEALYIVTLSAPTLLKNGSSEP-----------QTISLWEWTHPEREDA----LFTSVIEEPDLQKVVRFNLSNTRHIMTTGERKTMFWGWEDGGLRGYVPRISRHDFKRGKGVYTSCCFLPGTTQAITATSNGEIVLWEEVPVDAVDGVSQSGSVADRNLTAETAQLLLYRPKRQAIKILKLCDGLIAHISTIAGGNDAGGIDRVANMDRVLDSSSGGGSGAGSTTYIVVAGEDGAVRFYDLKFRVEAWFEDFGAGGVTSVSFATQLPSRRKGNSAS-----------FRVPDFVVGTTRAYVVACAASAFEELDPERRRGSVLVQGMVGSINCIAAHPLLPRLAVLCDSGDIQLWDYDLKVLMTLRSFDPARLRPQSCAFHPRGNLLAVGFSSGACKILDATNLEEVAGFRYTLASLNSVRFSPDGEM 1575
            NAL L W FGF KD++ GVHSL A  R A+FY AAHTGVIYDY RR Q LLQGHC+PI+   VS +K+WVVTAD G +SM+VVWD  SG PI++IF PH+NGV  IDIS +AL++VTLSA       +S+            Q +++WEW  P    A    L++S++   D+Q  VRFN  + R ++TTG ++ +FW W    L  Y P +++ DF++  G +T   F+P + QA+T T +G++VLW+ V  D                 AETA      P+R+A+KI++L  G        A       +  + +MD                 Y+V+   DGAVRFYD  FR+ AWFED  AG VTSVSFA    +  +G   +           F VPDF+V T  A++V  +A+ F E +P+RRRG++L+QG+  SI+ +A HP LP+LA+   SG +QLWDY  K L+ +R FD  +LRPQ   F   G  L VGF+SG  K+L A  L+++A FR   A++  V  SPD  +
Sbjct:   53 NALKLAWTFGFQKDLISGVHSLSAGTRRAVFYAAAHTGVIYDYARRQQRLLQGHCHPISCCVVSEDKRWVVTADRGQESMLVVWDAQSGNPIRTIFRPHANGVQAIDISPDALFLVTLSAVDRDDEDASDTSKSKTSRKRFDQELAVWEWAAPVSGAAVSKPLYSSLVATEDVQHAVRFNTYDVRELVTTGRQRVIFWSWAARTLLFYSPSLAQKDFRQIVGAFTQSLFVPDSAQALTGTEDGDLVLWDAVQADT---------------DAETASTSF--PERKAVKIVRLAGG--------AEPQHKVALTVIVDMDG----------------YLVIGSSDGAVRFYDFDFRLVAWFEDMNAGPVTSVSFALPASATNEGEHVNDTHQGDDTDEAFHVPDFIVSTASAFIVGMSATLFGEHEPDRRRGTLLMQGINDSIHGLATHPRLPQLALSSYSGVVQLWDYSAKRLIMVRRFDSEKLRPQCLTFARDGRKLVVGFTSGIVKVLHAHRLDDLASFRLGKAAITDVLVSPDSSL 550          
BLAST of mRNA_H-paniculata_contig276.7552.1 vs. uniprot
Match: A0A8K1C420_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C420_PYTOL)

HSP 1 Score: 410 bits (1053), Expect = 3.010e-129
Identity = 232/563 (41.21%), Postives = 319/563 (56.66%), Query Frame = 1
Query:    7 SSSTLNSAPTNALTLTWAFGFNKDVVDGVHSLCADGREALFYVAAHTGVIYDYTRRTQELLQGHCNPITAVAVSNNKKWVVTADAGPDSMMVVWDTASGTPIKSIFNPHSNGVLGIDISSEALYIVTLSA--PTLLKNGSSEP----------QTISLWEWTHPERED-ALFTSVIEEPDLQKVVRFNLSNTRHIMTTGERKTMFWGWEDGGLRGYVPRISRHDFKRGKGVYTSCCFLPGTTQAITATSNGEIVLWEEVPVDAVDGVSQSGSVADRNLTAETAQLLLYR---PKRQAIKILKLCDGLIAHISTIAGGNDAGGIDRVANMDRVLDSSSGGGSGAGSTTYIVVAGEDGAVRFYDLKFRVEAWFEDFGAGGVTSVSFATQ--LPSRRKGNSAS----------------------FRVPDFVVGTTRAYVVACAASAFEELDPERRRGSVLVQGMVGSINCIAAHPLLPRLAVLCDSGDIQLWDYDLKVLMTLRSFDPARLRPQSCAFHPRGNLLAVGFSSGACKILDATNLEEVAGFRYTLASLNSVRFSPDGEM 1575
            S S  N + +NAL L+W FGFNKD+V+GVH+L  + R A+FY AAHTGVIYDY  R Q+LLQGHC+PIT   VS +K+W+VTAD G +SM+VVWD  +G PIK+IF PH  GV  IDIS +AL+ VTLSA  P    NGS  P          Q +S+WEWT     + AL++S +   DLQ  VRFN  + R I++ G+++ +FW W +  L  Y P +S+ DF++  G +T   F+P + QA+T+T +G++VLW+ V            +  +  L     + +L R   P R+AIKI++L  G        +  N    I  + +MD                 Y+V+   DGAVRFYD  FR+ AWFED  AG V SVSFAT    PS    N+ S                      F VPDFVVGT  A++V  +A  F E + ERRRG++L+QG+   I+ +A HP   +LA+   SG +QLWDY+ + L+ +R FD  + RPQ   F P G  L VGF+SG  KIL A  LE+++  R +  ++  +R S D  +
Sbjct:   19 SGSAFNQSNSNALRLSWTFGFNKDLVNGVHNLTTESRRAIFYSAAHTGVIYDYANREQKLLQGHCHPITCCVVSEDKRWIVTADRGHESMIVVWDALTGNPIKTIFQPHPYGVQAIDISPDALFFVTLSATNPNETSNGSKSPSKNSKKMRFRQELSVWEWTSAATGNTALYSSFVATEDLQHAVRFNTYDIREIVSNGKQRVIFWNWAEQRLLFYSPSLSQKDFRQVIGDFTQSLFVPDSKQALTSTEDGDLVLWDVV------------ATTEETLEGADPEEMLARSRFPDRKAIKIVRLAGG--------SEMNKKVAITHLTDMDG----------------YLVLGSSDGAVRFYDFDFRLVAWFEDMNAGPVMSVSFATSNAAPSPSTSNNRSKTASRRSPSDEHGPPAQEDEEFFHVPDFVVGTASAFIVGMSADLFAEHEAERRRGTLLMQGINDEIHGLATHPKYSQLALSSYSGAVQLWDYNSRRLIMMRKFDAEKFRPQCLTFSPEGKRLFVGFTSGVIKILHAQKLEDISMLRLSKVAITDIRVSLDASL 545          
BLAST of mRNA_H-paniculata_contig276.7552.1 vs. uniprot
Match: A0A485LPA6_9STRA (Aste57867_23417 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LPA6_9STRA)

HSP 1 Score: 407 bits (1045), Expect = 5.620e-129
Identity = 219/525 (41.71%), Postives = 319/525 (60.76%), Query Frame = 1
Query:   19 LNSAPTNALTLTWAFGFNKDVVDGVHSLCADGREALFYVAAHTGVIYDYTRRTQELLQGHCNPITAVAVSNNKKWVVTADAGPDSMMVVWDTASGTPIKSIFNPHSNGVLGIDISSEALYIVTLSAPTLLKNGSSE-PQTISLWEWTHPEREDALFTSVIEEPDLQKVVRFNLSNTRHIMTTGERKTMFWGWEDGGLRGYVPRISRHDFKRGKGVYTSCCFLPGTTQAITATSNGEIVLWEEVPVDAVDGVSQSGSVADRNLTAETAQLLLYRPKRQAIKILKLCDGLIAHISTIAGGNDAG---GIDRVANMDRVLDSSSGGGSGAGSTTYIVVAGEDGAVRFYDLKFRVEAWFEDFGAGGVTSVSFATQ-LPSRRKGNSASFRVPDFVVGTTRAYVVACAASAFEELDPERRRGSVLVQGMVGSINCIAAHPLLPRLAVLCDSGDIQLWDYDLKVLMTLRSFDPARLRPQSCAFHPRGNLLAVGFSSGACKILDATNLEEVAGFRYTLASLNSVRFSPDGEMV 1578
            ++S   NAL L+W+FGFNKD+V GVHSL  D   A+FY A HTGVIY+Y  RTQ LLQGHCN I+  AVS +K+W+VTAD G DSM+VVWD  +G PIK+IFNPH++GV  +D+S +A++IVTLS     ++ + E  Q I LWEWT   REDAL+ + +   D+Q  VRFN  + R +MT G ++ +FW W    L+ Y P +S+ DFK+  G +T   F+P ++QAITAT +G+++LW+  P+                   +T   L++  K+ A+KI+++             G+DA     I+ +A+MD                 Y+V+   DGAVRFYD  FR+ AW+ED  AG V SVSFA   +P+   G    F VP+FVV T+ A+++    +  +E D E+RRG++L+QG+   I+ +AAHP    +AV C SG +QLW+Y+ K L+ +R+FD  +LRPQ   + P G  L VGF++G  K++ A  L++V  FR+  + +  V+ + DG  +
Sbjct:    1 MDSPSANALGLSWSFGFNKDIVGGVHSLSDDHVHAIFYTAGHTGVIYNYANRTQRLLQGHCNTISCCAVSEDKRWIVTADRGQDSMLVVWDANTGNPIKTIFNPHADGVQCLDMSPDAMFIVTLSIANAKQDDAPEHAQEIKLWEWTVA-REDALYAAAVTTEDVQTCVRFNTYDIRELMTNGAQRVIFWNWTHHTLQFYSPPLSQKDFKQTIGAFTQSLFVPDSSQAITATDDGDLILWDSSPI-------------------KTGAALVHTDKK-AVKIVRM------------SGHDASKAVAINYLADMDG----------------YLVMGCADGAVRFYDFDFRLVAWYEDLCAGPVVSVSFANMDMPASVDG----FHVPEFVVATSHAFILGITPAIHDEYDVEKRRGTLLMQGINDEIHGLAAHPASAHIAVSCYSGAVQLWEYNTKRLVMMRNFD--KLRPQCLTYSPSGKHLLVGFTNGTIKLVHAATLDDVTTFRHAKSPVVDVKIASDGTFI 470          
BLAST of mRNA_H-paniculata_contig276.7552.1 vs. uniprot
Match: H3GM44_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GM44_PHYRM)

HSP 1 Score: 409 bits (1052), Expect = 9.470e-129
Identity = 231/544 (42.46%), Postives = 319/544 (58.64%), Query Frame = 1
Query:   37 NALTLTWAFGFNKDVVDGVHSLCADGREALFYVAAHTGVIYDYTRRTQELLQGHCNPITAVAVSNNKKWVVTADAGPDSMMVVWDTASGTPIKSIFNPHSNGVLGIDISSEALYIVTLSA----------PTLLKNGSSE--PQTISLWEWTHPEREDA----LFTSVIEEPDLQKVVRFNLSNTRHIMTTGERKTMFWGWEDGGLRGYVPRISRHDFKRGKGVYTSCCFLPGTTQAITATSNGEIVLWEEVPVDAVDGVSQSGSVADRNLTAETAQLLLYRPKRQAIKILKLCDGLIAHISTIAGGNDAGGIDRVANMDRVLDSSSGGGSGAGSTTYIVVAGEDGAVRFYDLKFRVEAWFEDFGAGGVTSVSFATQLPSR-----------RKG----NSASFRVPDFVVGTTRAYVVACAASAFEELDPERRRGSVLVQGMVGSINCIAAHPLLPRLAVLCDSGDIQLWDYDLKVLMTLRSFDPARLRPQSCAFHPRGNLLAVGFSSGACKILDATNLEEVAGFRYTLASLNSVRFSPDGEM 1575
            NAL L W FGF KD+++GVHSL A  R A+FY AAHTGVIYDY RR Q LLQGHC+PI+   VS +K+WVVTAD G +SM+VVWD  SG PI++IF PH+NGV  IDIS +AL++VTLSA           T  KN + +   Q +++WEW  P    A    L++S++   D+Q  VRFN  + R ++TTG ++ +FW W    L  Y P +++ DF++  G +T   F+P + QA+T T +G++VLW+ V  D     + +GS                 P+R+A+KI++L           AGG +     R   +  ++D             Y+V+   DGAVRFYD  FR+ AWFED  AG VTSVSFA  LP+            R G    +S SF VP+F+V T  A++V  +A  F E +PERRRG++L+QG+  SI+ +AAHP LP+LA+   SG +QLWDY  K L+ +R F+  +LRPQ   F   G  L VGF+SG  K+L    L+++A FR   A++  V  SPD  +
Sbjct:   50 NALRLAWTFGFQKDLINGVHSLSAGSRRAVFYAAAHTGVIYDYARRQQRLLQGHCHPISCCVVSEDKRWVVTADRGHESMLVVWDAQSGNPIRTIFRPHANGVQAIDISPDALFLVTLSAVNREDENGRETTEAKNTARKRFDQELAVWEWAAPASGAAVSKPLYSSLVATEDVQHAVRFNTYDVRELVTTGRQRVIFWSWAARTLLFYSPSLAQKDFRQVVGAFTQSLFVPDSAQALTGTEDGDLVLWDAVQSDN-GAETPAGSF----------------PERKAVKIVRL-----------AGGAEP---QRKVALTALVDMDG----------YLVIGSSDGAVRFYDFDFRLVAWFEDMNAGPVTSVSFA--LPANATNGDADSNLGRAGGDDADSESFHVPEFIVSTASAFIVGMSAGLFAEHEPERRRGTLLMQGINDSIHGLAAHPRLPQLALSSYSGVVQLWDYAAKRLIMVRRFESEKLRPQCLTFARDGRKLVVGFTSGIVKVLHGHRLDDLASFRLGKAAITDVLVSPDSSL 550          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig276.7552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5B1_ECTSI5.440e-28373.55Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A397D0A3_9STRA1.460e-13443.77Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
W4H2Q6_9STRA4.020e-13443.77Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A418AVL0_9STRA1.040e-13243.39C2 domain-containing protein n=2 Tax=Aphanomyces i... [more]
A0A662WL71_9STRA3.270e-13142.00Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A6G0XN73_9STRA5.900e-13142.41Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W2QWE4_PHYPN1.400e-13041.93Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]
A0A8K1C420_PYTOL3.010e-12941.21Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485LPA6_9STRA5.620e-12941.71Aste57867_23417 protein n=1 Tax=Aphanomyces stella... [more]
H3GM44_PHYRM9.470e-12942.46Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig276contigH-paniculata_contig276:196..6263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score810.1
Seed ortholog evalue6.2e-232
Seed eggNOG ortholog2880.D7G5B1
Preferred nameWDR66
Hectar predicted targeting categoryother localisation
GOsGO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0030030,GO:0031514,GO:0032838,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120036,GO:0120038
EggNOG free text desc.cilium movement
EggNOG OGs2CCTB@1,2QQ05@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons9
Model size1578
Cds size1578
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929834.142342-CDS-H-paniculata_contig276:195..4021622929834.142342-CDS-H-paniculata_contig276:195..402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig276 196..402 -
1691481031.5149524-CDS-H-paniculata_contig276:195..4021691481031.5149524-CDS-H-paniculata_contig276:195..402Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig276 196..402 -
1622929834.155311-CDS-H-paniculata_contig276:2685..28121622929834.155311-CDS-H-paniculata_contig276:2685..2812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig276 2686..2812 -
1691481031.5245914-CDS-H-paniculata_contig276:2685..28121691481031.5245914-CDS-H-paniculata_contig276:2685..2812Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig276 2686..2812 -
1622929834.172602-CDS-H-paniculata_contig276:3101..32831622929834.172602-CDS-H-paniculata_contig276:3101..3283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig276 3102..3283 -
1691481031.5330043-CDS-H-paniculata_contig276:3101..32831691481031.5330043-CDS-H-paniculata_contig276:3101..3283Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig276 3102..3283 -
1622929834.193709-CDS-H-paniculata_contig276:3789..39961622929834.193709-CDS-H-paniculata_contig276:3789..3996Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig276 3790..3996 -
1691481031.5416603-CDS-H-paniculata_contig276:3789..39961691481031.5416603-CDS-H-paniculata_contig276:3789..3996Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig276 3790..3996 -
1622929834.211092-CDS-H-paniculata_contig276:4185..43171622929834.211092-CDS-H-paniculata_contig276:4185..4317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig276 4186..4317 -
1691481031.5504014-CDS-H-paniculata_contig276:4185..43171691481031.5504014-CDS-H-paniculata_contig276:4185..4317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig276 4186..4317 -
1622929834.2260978-CDS-H-paniculata_contig276:4634..47091622929834.2260978-CDS-H-paniculata_contig276:4634..4709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig276 4635..4709 -
1691481031.5595713-CDS-H-paniculata_contig276:4634..47091691481031.5595713-CDS-H-paniculata_contig276:4634..4709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig276 4635..4709 -
1622929834.2470067-CDS-H-paniculata_contig276:4930..50621622929834.2470067-CDS-H-paniculata_contig276:4930..5062Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig276 4931..5062 -
1691481031.5801518-CDS-H-paniculata_contig276:4930..50621691481031.5801518-CDS-H-paniculata_contig276:4930..5062Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig276 4931..5062 -
1622929834.261754-CDS-H-paniculata_contig276:5283..56071622929834.261754-CDS-H-paniculata_contig276:5283..5607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig276 5284..5607 -
1691481031.599016-CDS-H-paniculata_contig276:5283..56071691481031.599016-CDS-H-paniculata_contig276:5283..5607Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig276 5284..5607 -
1622929834.2771926-CDS-H-paniculata_contig276:6071..62631622929834.2771926-CDS-H-paniculata_contig276:6071..6263Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig276 6072..6263 -
1691481031.609073-CDS-H-paniculata_contig276:6071..62631691481031.609073-CDS-H-paniculata_contig276:6071..6263Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig276 6072..6263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig276.7552.1prot_H-paniculata_contig276.7552.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig276 196..6263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig276.7552.1

>prot_H-paniculata_contig276.7552.1 ID=prot_H-paniculata_contig276.7552.1|Name=mRNA_H-paniculata_contig276.7552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=526bp
MDSSSTLNSAPTNALTLTWAFGFNKDVVDGVHSLCADGREALFYVAAHTG
VIYDYTRRTQELLQGHCNPITAVAVSNNKKWVVTADAGPDSMMVVWDTAS
GTPIKSIFNPHSNGVLGIDISSEALYIVTLSAPTLLKNGSSEPQTISLWE
WTHPEREDALFTSVIEEPDLQKVVRFNLSNTRHIMTTGERKTMFWGWEDG
GLRGYVPRISRHDFKRGKGVYTSCCFLPGTTQAITATSNGEIVLWEEVPV
DAVDGVSQSGSVADRNLTAETAQLLLYRPKRQAIKILKLCDGLIAHISTI
AGGNDAGGIDRVANMDRVLDSSSGGGSGAGSTTYIVVAGEDGAVRFYDLK
FRVEAWFEDFGAGGVTSVSFATQLPSRRKGNSASFRVPDFVVGTTRAYVV
ACAASAFEELDPERRRGSVLVQGMVGSINCIAAHPLLPRLAVLCDSGDIQ
LWDYDLKVLMTLRSFDPARLRPQSCAFHPRGNLLAVGFSSGACKILDATN
LEEVAGFRYTLASLNSVRFSPDGEMV
back to top

mRNA from alignment at H-paniculata_contig276:196..6263-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig276.7552.1 ID=mRNA_H-paniculata_contig276.7552.1|Name=mRNA_H-paniculata_contig276.7552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6068bp|location=Sequence derived from alignment at H-paniculata_contig276:196..6263- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATTCATCCAGTACTCTCAATTCGGCACCCACGAACGCATTGACCCT CACTTGGGCTTTCGGCTTTAACAAGGATGTCGTAGACGGTGTGCATAGTT TGTGTGCTGATGGCCGTGAAGCGTTGTTCTACGTCGCAGCTCATACGGGC GTGATCTACGACTATACTAGACGCACACAAGAGCTATTGCAGGTGTGCGT AATACGTGTTTATAGCTCACACGATAGAGAGAGTAAAAATCAATCATTTT CGGTCTGTTACTCCTTTCCAACTTATATATTGCCGATGTATCCCTCGAGA GATTGTTGCCGAACACCGCTTCGGGCATCTCGTCTGTGGCACGTGTTGAG ATTGGCATGTCAATCGTGAGAACGGCGACCATCAACGCATGTTTCGCCAC AGGCTTTAGTATTTTTCTTCCAATTTCGAGAGTGAGCAACCACGCTCGCA GTGTTTAGACGACGAAGTCTTGTCTTGCCACAAGCTAGGGCTTTCGAGAA ATTCTCGTGTCGGTGCGCCATTCTCTTTTAACTGCGATACTTGCTGCATC ATGACGATTCGGCAAACAACACTTTCTCAAGACTAAAAGAGCCTGCGCAA CCCTCTCCGATGTGCGGCTTAGCTCCTTCCCCGCCATTGATGACCATGCC AACCAGGGACATTGCAATCCCATCACGGCGGTTGCCGTAAGCAACAACAA GAAGTGGGTGGTCACTGCGGATGCTGGTCCAGACAGCATGATGGTGGTAT GGGACACGGCGTCGGGTACCCCCATTAAGAGCATCTTCAATCCGCACTCC AACGGTGTGCTGGGAATCGACATCTCTTCAGAAGCTTTGTATATTGTCAC CTTGAGTGCCCCTACCCTACTGAAGAACGGTAGCTCTGAACCCCAGACAA TATCCCTTTGGGAATGGACTCATCCCGAAAGAGAAGATGCGCTGTTCACT AGCGTGATCGAGGAACCCGACCTCCAGAAGGTGCGAAAGTCAGCAGGCTT TGGAAGAGACAAGTATTGGATCCGTGGTGCTGCTGGTTGCTCTGTAGATA ACAATACGATACTACCGGACTGTATGGTGCTCTTGTGCTACTGCTTTTTT ATGCGTGCGTAAAATTTTCCGTTTGTGAAGGGTGTCCAATAGAACGGATA GCTTGCTGCAGCTCAATCTACTGAGACTGAATTACATGCCATGTGCAACA GGTGGTGAGATTTAACCTATCTAATACCCGGCACATCATGACTACGGGGG AACGCAAGACGATGTTCTGGGGATGGGAAGATGGGGGTCTCCGGGGCTAC GTCCCTCGAATATCTCGCCACGACTTCAAGAGGGTAAGAGCTGCGGGAAC GTATGGTTTGTTTTGCTGGCGCAGTATCATACATTGTACAGTTTAACCCA CAATACTTCGCAGAACTCGACGACGCCTTCAGTACTGCCACGAGCAGGGC CTCGTTACAACATAAGCTAAATATCTCGTTCCTTCGTTGGGCAACATTCT CTTTGCACTATGACGTCGCCTCCTCGCCCATCGTCCTTTCATGGGACTCC TCAGGGAAAGGGCGTGTATACATCTTGCTGCTTTCTTCCGGGAACCACCC AGGCTATCACAGCCACGTCGAACGGCGAGGTAGGAGGTCGAACCTGCCTA TGACTATGTTTGACTATAGTTTTGCTTTCCCGGTAATAATGAAGAAGACC GTTTGTCTTGATATTGTCATCACAACAACTGCCGCAGTCGTATCTTTAGT AAGCGATACCGAGCGGGGTACGGCTAGATTTCCTTGACTGCAACGGAAGC AAAAGGCGAGTGCGTTATCTTGAACTCATTGGAGTTTATTGCAAGCGTAC TCAAGAAACCCATAAATATTGAGTTTATACTAGCAGTTAACAGCTGTTTG GTTTTGTCTGTGCTCGTCGTACCAACATCGGGCGGGGGGCGAAAAGATTG TTTTATGGGAAGAAGTGCCGGTGGATGCAGTGGACGGCGTCAGCCAGAGC GGGAGCGTTGCAGACCGGAATCTGACCGCCGAAACGGCGCAACTACTCTT GTATAGACCGAAGCGGCAAGCCATCAAGGTGATCTAAGTAAAGAATACCA TATATCGGGAGAATCAAGCGAAAGTTGGAGTTCTTCAGCGAGAAGCAAGG TAGCAAGAAGCAGAAAACATCTGTCGTCAGCATGCACCCGCTTCGTTCAC AAGAGCTGTGCCCTCTCCCAAACGCCTCCTCGTACTCACCATCCTTGCCG ACTTCCAAACACATTAGATTTTGAAGCTTTGCGATGGATTGATTGCCCAT ATTAGTACTATCGCCGGAGGCAATGATGCGGGGGGGATCGACAGAGTGGC AAATATGGATAGAGTGTTGGATTCAAGCTCAGGCGGGGGGTCAGGCGCGG GCAGCACGACGTATATTGTGGTGGCAGGCGAAGATGGGGCGGTGCGATTC TATGACCTTAAATTCCGTGTGGAGGTAAGACCATGAGGACTCTTGCATAT TTCGAAACCGGGAGTCAACCATATAGAGGTCTAGTCGGATCGGTGGCAAT GCTGTTGACGACGCTGCTATCTTTGCAATGTGGAATGCCACATTCGCAGA AGGTAGGCTGGAAAGAAGTCGGGGGGCATCGGTGTAAAAGACGTAGCTTG AGCGGAGGAAACCAGCAGTGTGTGTTGTTGCTTTTTTCAATGCGTTGGAG AACGCCTTGAGTCCTTTAAGGTAAGCATGAAAGGAAGCCACGAATCAACA CAACGTACGTAATGGAACCCGTCCGAGGAAATGCCATCTTGTGTCAACTT GCACGATAATTGCTGATGTTTGAAGTAGCTGATAAAGCTTGCCCTGAATC CGTCACAGCCCTTCTATTGAGTAGGAGAACTCTACCCTCTCAACGTTGGA GATCTACAGTGTCCGGGAAATGTTGCACATGAGAGGGCTATTTGTCGCTC TAACCCTCACTATCTGCTTTCTGTTCCAAGGCCTGGTTTGAAGATTTTGG AGCGGGCGGCGTGACCTCTGTCAGTTTCGCCACACAATTACCTTCTCGAC GGAAAGGAAACAGTGCTTCCTTCCGCGTGCCGGATTTCGTTGTAGGCACA ACTCGGGCGTACGTAGTTGCTTGCGCTGCTTCGGCCTTCGAAGAACTCGA CCCCGAGAGGAGGTGATCATGCGTATCGATGATAGGGGAATATTCTTAAA ACAAGAGTAAATAGGAAGGCGGTTCGGTCTCCACTAAGCGCTGCTTCGAT AGAATCAAGCTAGCCATCGCTCCGAACACAAGATGTATCTCCCATCTACT TTTCGTCGCCCGGATGTCGCGACGAACTTTGAGTACTTCCGAACTGTTCT ACACAAAACAATTTATTGCGTCTGGTACTTCTTTGTCTCCATTCCTTTTA TTGTTGCCTACGCCCACGCTTTCGTGTTCACTTCTGGCTCTCGGGGATCA GGAGAGGCTCTGTGTTGGTTCAGGGTATGGTAGGGTCGATCAATTGCATC GCTGCACATCCTCTGCTGCCGCGCCTAGCAGTTTTGTGCGATTCCGGAGA CATTCAACTATGGGACTACGATCTCAAGGTAGAACACGTGCCGGTCGTAG TACATCTCCGGTCTTCGAGTGGCCACAAATAGATTGGTTTGGGGCCATTC TTTTATGTCGTTTTATCCCCCGCTTGTCCACGAAACCCTTTCACTTGTCG TATGATATCACTATATGAGGGAGCGCCAAGTGTATCGAAGAAAGTCCTGA TGTGCGACATCGACGTTAGAATTTCAGATATCTGCCCGATCGTTTACTAC TATCACTGTTAGGAAGTGGTTTCATCGATCGTTTCGATTCGGTGTAGATC GCAGTTTGTGGCAATTTTGGCAAGCAAAGGTGACATCGTGATGGTTGAGC TCACCGTATAGGTTTCGATGGGTGTAAAAGGATCAAACCTTTTTAACCGA TTGGGGTATTTGTAACCAGTGTCACTAGGCTACATGATGACATACCTCCT TGGGTCTATAATCGTCAGCGGATCACTACACGCAACCCTATTGCAGAAGG GGAAAAAGAAGAAAGAGGCACTATCATATACATATTCTAAGGGATTTCAT CATTTTGTCGGCCCATAAGCAGGCTGTTGCTAAGTAGAAGTGTAGCAGAG CACTCGAGATGGGTAGTCTGCATCGATCATCGTGTTTGAAATCGAAAATC TAAGCATCGAACCGGAATTCCTCATTTGTCGACGCACATCATATTTGTTT TTATAATATTAGCCGTAGCGTTGCAGTTCAACAGACACTTGGATTTAGCA TATCGTGCTCTTCACAAATGACCCTAAACACTCCGCATACCCAACTACTG AAGAATCAAGGATTGAAGCTAGGCGAGAAATACGGCTACTCTTAATCCTA CTATAAGTCAAGGTCCTCGTTTCTCCAGTTATATTTACAGCCGAGCCCGC CTTGAGAAAGCATCTGGTGTGCAAAGCAAAAGTGTGCGCCTAAGGTAGGC AACTCTTCTTACCCCGTCGGGGATGGTAACTTTCGGTCCCCGGGTGGAGT GTCGGCGTTTTATGGTTCAATCGATGCATCTTGGTAAAGACAACTTGCTC CTAACAAAAAAAACAATGTTCCTCCACTTTGTTACAAATTTCGCCCCAAT ATTATAATCTTTGTGCTGGATACCAGGCCCCAGCATAGCTGTATTCTACT CTACTGCATTTTTCAATGCAATTATGTGCACTACGTGGAGTGCTCGCTGC ATGGTACATATTGTTGTAGGGGGAGTTAGTGCTCCATTTTTTTAAAGAAA ATAATGTGCAGTTTCGTTGTACTGCACACCATACCTCTCGCTCAGGCATA ATCAGCCCCGCTCCAAAAATCCCCCGGGTACCTGCACCTCTTCCCTTCGT CAAGTTGCTCTGTGATTCTTCCACGTATTCCGCTTGAAACCATGAACGTT ACACGAAAGGGCAAGCTGTCTTAGTGTAACCACCCACGTTCCCGTGTACA CGCAGATAGGTCCCCACTTGCTCTAGCTTCAGTGATAGTTCTATTCGTGT GTGTGACAAGGTCATGGTCGGCTCAGCCTCATCCACATCGTCTCCGTCTG ACTCCGTACAACATAGGTTAAAGTTCGTCTGTTCCTCCTTAGAGTTAGAG TTACCCCTGAACTAAAAACGAAATTCTTCCTTGAAGCCGGGAGGCATCTC TACCCTGTGCGTCCTTCAAGCGGGGGGGACTGCACAGATCGTCTTTTAAG TTCTATGCATGATGTTGTGTGTTGCAGTCAACTCCATCTTCGCTTTGACC GCTGCGGATGATCAAGATTTAAGGGTTACGACTTACAACGTTACTTGTGC TAGTCATCCAACGTGGACTCTTCAGACGTTGTGTGTGTAAGAAACTCCTT ATGCCTGCCCGCTGCAGTTCGACGAACATGCAGGTGTCCGTATCGTATTC TCCGTAGCGGAAGAATTATTGCTCCTTGTCCGCTGCTTTTAACGCACACG TAGGTCTACGCGTCACCATATTCTTCATAGTATTCTGCGTCCGTTGGTGT TTAACGTTATGTAGTTCTTGTACCGTGTTCTCCGTCTGCAATTTTCCTAC AATGAAAGTAAGTCGATGCGAAGATATCAAAGATGCCGACTCGTTTACTG TTAGTCACAGCAAATAGCTGACGGTGCCTAACTGACCAAAGACTACTTAA TGGTCAAGGTAATCGCATCACTGGTGGGTGTGACCATATCTTGGCAGTGT GTGTAATCATCTGTAAACCTTCAACAGCGAAATACCCCCATAAACGCGAG CTATCAAGTACATTCACTTCCCCCCCTCGCATCAATCTTCAATCCATTGT CACACTAAAAGGTGTTAATGACGTTGCGATCATTCGATCCGGCCCGGTTG CGACCACAAAGTTGTGCGTTTCACCCTCGCGGCAATCTACTCGCTGTCGG CTTCAGTTCTGGGGCGTGCAAGATTCTGGATGCGACAAACCTCGAGGAAG TCGCCGGTTTCCGATACACCTTGGCATCTCTCAACTCCGTCCGCTTCAGT CCAGACGGAGAAATGGTA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig276:196..6263-

>mRNA_H-paniculata_contig276.7552.1 ID=mRNA_H-paniculata_contig276.7552.1|Name=mRNA_H-paniculata_contig276.7552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3156bp|location=Sequence derived from alignment at H-paniculata_contig276:196..6263- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATTCATCCAGTACTCTCAATTCGGCACCCACGAACGCATTGACCCT
CACTTGGGCTTTCGGCTTTAACAAGGATGTCGTAGACGGTGTGCATAGTT
TGTGTGCTGATGGCCGTGAAGCGTTGTTCTACGTCGCAGCTCATACGGGC
GTGATCTACGACTATACTAGACGCACACAAGAGCTATTGCAGATGGATTC
ATCCAGTACTCTCAATTCGGCACCCACGAACGCATTGACCCTCACTTGGG
CTTTCGGCTTTAACAAGGATGTCGTAGACGGTGTGCATAGTTTGTGTGCT
GATGGCCGTGAAGCGTTGTTCTACGTCGCAGCTCATACGGGCGTGATCTA
CGACTATACTAGACGCACACAAGAGCTATTGCAGGGACATTGCAATCCCA
TCACGGCGGTTGCCGTAAGCAACAACAAGAAGTGGGTGGTCACTGCGGAT
GCTGGTCCAGACAGCATGATGGTGGTATGGGACACGGCGTCGGGTACCCC
CATTAAGAGCATCTTCAATCCGCACTCCAACGGTGTGCTGGGAATCGACA
TCTCTTCAGAAGCTTTGTATATTGTCACCTTGAGTGCCCCTACCCTACTG
AAGAACGGTAGCTCTGAACCCCAGACAATATCCCTTTGGGAATGGACTCA
TCCCGAAAGAGAAGATGCGCTGTTCACTAGCGTGATCGAGGAACCCGACC
TCCAGAAGGGACATTGCAATCCCATCACGGCGGTTGCCGTAAGCAACAAC
AAGAAGTGGGTGGTCACTGCGGATGCTGGTCCAGACAGCATGATGGTGGT
ATGGGACACGGCGTCGGGTACCCCCATTAAGAGCATCTTCAATCCGCACT
CCAACGGTGTGCTGGGAATCGACATCTCTTCAGAAGCTTTGTATATTGTC
ACCTTGAGTGCCCCTACCCTACTGAAGAACGGTAGCTCTGAACCCCAGAC
AATATCCCTTTGGGAATGGACTCATCCCGAAAGAGAAGATGCGCTGTTCA
CTAGCGTGATCGAGGAACCCGACCTCCAGAAGGTGGTGAGATTTAACCTA
TCTAATACCCGGCACATCATGACTACGGGGGAACGCAAGACGATGTTCTG
GGGATGGGAAGATGGGGGTCTCCGGGGCTACGTCCCTCGAATATCTCGCC
ACGACTTCAAGAGGGTGGTGAGATTTAACCTATCTAATACCCGGCACATC
ATGACTACGGGGGAACGCAAGACGATGTTCTGGGGATGGGAAGATGGGGG
TCTCCGGGGCTACGTCCCTCGAATATCTCGCCACGACTTCAAGAGGGGAA
AGGGCGTGTATACATCTTGCTGCTTTCTTCCGGGAACCACCCAGGCTATC
ACAGCCACGTCGAACGGCGAGGGAAAGGGCGTGTATACATCTTGCTGCTT
TCTTCCGGGAACCACCCAGGCTATCACAGCCACGTCGAACGGCGAGATTG
TTTTATGGGAAGAAGTGCCGGTGGATGCAGTGGACGGCGTCAGCCAGAGC
GGGAGCGTTGCAGACCGGAATCTGACCGCCGAAACGGCGCAACTACTCTT
GTATAGACCGAAGCGGCAAGCCATCAAGATTGTTTTATGGGAAGAAGTGC
CGGTGGATGCAGTGGACGGCGTCAGCCAGAGCGGGAGCGTTGCAGACCGG
AATCTGACCGCCGAAACGGCGCAACTACTCTTGTATAGACCGAAGCGGCA
AGCCATCAAGATTTTGAAGCTTTGCGATGGATTGATTGCCCATATTAGTA
CTATCGCCGGAGGCAATGATGCGGGGGGGATCGACAGAGTGGCAAATATG
GATAGAGTGTTGGATTCAAGCTCAGGCGGGGGGTCAGGCGCGGGCAGCAC
GACGTATATTGTGGTGGCAGGCGAAGATGGGGCGGTGCGATTCTATGACC
TTAAATTCCGTGTGGAGATTTTGAAGCTTTGCGATGGATTGATTGCCCAT
ATTAGTACTATCGCCGGAGGCAATGATGCGGGGGGGATCGACAGAGTGGC
AAATATGGATAGAGTGTTGGATTCAAGCTCAGGCGGGGGGTCAGGCGCGG
GCAGCACGACGTATATTGTGGTGGCAGGCGAAGATGGGGCGGTGCGATTC
TATGACCTTAAATTCCGTGTGGAGGCCTGGTTTGAAGATTTTGGAGCGGG
CGGCGTGACCTCTGTCAGTTTCGCCACACAATTACCTTCTCGACGGAAAG
GAAACAGTGCTTCCTTCCGCGTGCCGGATTTCGTTGTAGGCACAACTCGG
GCGTACGTAGTTGCTTGCGCTGCTTCGGCCTTCGAAGAACTCGACCCCGA
GAGGAGGCCTGGTTTGAAGATTTTGGAGCGGGCGGCGTGACCTCTGTCAG
TTTCGCCACACAATTACCTTCTCGACGGAAAGGAAACAGTGCTTCCTTCC
GCGTGCCGGATTTCGTTGTAGGCACAACTCGGGCGTACGTAGTTGCTTGC
GCTGCTTCGGCCTTCGAAGAACTCGACCCCGAGAGGAGGAGAGGCTCTGT
GTTGGTTCAGGGTATGGTAGGGTCGATCAATTGCATCGCTGCACATCCTC
TGCTGCCGCGCCTAGCAGTTTTGTGCGATTCCGGAGACATTCAACTATGG
GACTACGATCTCAAGGAGAGGCTCTGTGTTGGTTCAGGGTATGGTAGGGT
CGATCAATTGCATCGCTGCACATCCTCTGCTGCCGCGCCTAGCAGTTTTG
TGCGATTCCGGAGACATTCAACTATGGGACTACGATCTCAAGGTGTTAAT
GACGTTGCGATCATTCGATCCGGCCCGGTTGCGACCACAAAGTTGTGCGT
TTCACCCTCGCGGCAATCTACTCGCTGTCGGCTTCAGTTCTGGGGCGTGC
AAGATTCTGGATGCGACAAACCTCGAGGAAGTCGCCGGTTTCCGATACAC
CTTGGCATCTCTCAACTCCGTCCGCTTCAGTCCAGACGGAGAAATGGTAG
TGTTAATGACGTTGCGATCATTCGATCCGGCCCGGTTGCGACCACAAAGT
TGTGCGTTTCACCCTCGCGGCAATCTACTCGCTGTCGGCTTCAGTTCTGG
GGCGTGCAAGATTCTGGATGCGACAAACCTCGAGGAAGTCGCCGGTTTCC
GATACACCTTGGCATCTCTCAACTCCGTCCGCTTCAGTCCAGACGGAGAA
ATGGTA
back to top