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Homology
BLAST of mRNA_H-paniculata_contig11173.755.1 vs. uniprot
Match: D8LTP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP8_ECTSI) HSP 1 Score: 132 bits (332), Expect = 3.960e-31 Identity = 71/157 (45.22%), Postives = 100/157 (63.69%), Query Frame = 2
Query: 311 EVEHLQPAKPDKTSGMVVLGAFVAGSLVGIIICAPAFVVVVFGAGLGGLCLRDGKVGDFARKVGGLGGKVILAVVKKTRELNDRFHIADKAKTLAKDTGSRIQKADEKRGFSKNLKARASSLWSHIDEKTRPR-RALEEQRPPVETSTVTDGTQLPF 778
E H + D+ SG++V G+F+AG+LVG++ICAPAFVV++FGAG L D KVG F+RKVG + ++LAV + RE N + + DKAK AK+ ++ K G N+KARASSLW +D++T P +A + + S VTDGTQ+PF
Sbjct: 38 EQPHQEVIAHDEASGIIVFGSFIAGALVGVVICAPAFVVLLFGAGAAALTKSDSKVGKFSRKVGKVSSDILLAVFRLAREYNHKHKLTDKAKVGAKEAAGKVTDKMRKLGIVDNVKARASSLWDQVDKRTAPAGQASIQAAQGQDLSQVTDGTQIPF 194
BLAST of mRNA_H-paniculata_contig11173.755.1 vs. uniprot
Match: D8LTQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTQ0_ECTSI) HSP 1 Score: 82.4 bits (202), Expect = 8.550e-14 Identity = 54/161 (33.54%), Postives = 86/161 (53.42%), Query Frame = 2
Query: 251 VKAVSFDDLAVGSESKLLNIEVEHLQPAKP---DKTSGMVVLGAFVAGSLVGIIIC------APAFVVVVFGAGLGGLCLRDGKVGDFARKVGGLGGKVILAVVKKTRELNDRFHIADKAKTLAKDTGSRIQKADEKRGFSKNLKARASSLWSHIDEKTRP 706
V A + AV ++S L+ E EH D++S ++VLG+FVAG+LVG I+C AP VV++ GAG D K G +R+VG V LA+ + RE N ++ + K + A++ +++ ++ G +K RA SLW +D++T P
Sbjct: 9 VSAPGHEAAAVRNDS-YLDTEQEHHHDESTLAHDESSAIIVLGSFVAGALVGAILCVRVFMFAPTVVVLLCGAGAAVFTKSDSKAGQISREVGKWTCDVFLALFRVVREFNYKYQLTVKVRITAQEAAGKVKAEVQRLGICDGVKTRARSLWEQVDKRTAP 168
BLAST of mRNA_H-paniculata_contig11173.755.1 vs. uniprot
Match: A0A6H5JUV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV7_9PHAE) HSP 1 Score: 71.2 bits (173), Expect = 2.130e-10 Identity = 45/132 (34.09%), Postives = 71/132 (53.79%), Query Frame = 2
Query: 341 DKTSGMVVLGAFVAGSLVGIIICA------PAFVVVVFGAGLGGLCLRDGKVGDF----------ARKVGGLGGKVILAVVKKTRELNDRFHIADKAKTLAKDTGSRIQKADEKRGFSKNLKARASSLWSHI 688
D++S +++LG+FVAG+L+G IICA P VV++ GAG D +VG F +R VG V LA+ + RE N ++ +ADK K A++ +++ ++ G +K RA SLW +
Sbjct: 41 DESSAIIMLGSFVAGALMGAIICARVFMFAPMVVVLLCGAGAAVFTNSDSEVGKFVVRLRWAGQISRGVGKWTSDVFLALFRVVREFNYKYQLADKVKITAQEAARKVKAEVQRIGICDGVKTRARSLWEQV 172
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal anchor |
| Exons | 6 |
| Model size | 3386 |
| Cds size | 612 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11173.755.1 >prot_H-paniculata_contig11173.755.1 ID=prot_H-paniculata_contig11173.755.1|Name=mRNA_H-paniculata_contig11173.755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=204bp
MCTAKEASTPACGSSQDMVKAVSFDDLAVGSESKLLNIEVEHLQPAKPDK
TSGMVVLGAFVAGSLVGIIICAPAFVVVVFGAGLGGLCLRDGKVGDFARK
VGGLGGKVILAVVKKTRELNDRFHIADKAKTLAKDTGSRIQKADEKRGFS
KNLKARASSLWSHIDEKTRPRRALEEQRPPVETSTVTDGTQLPFGQQIQR
TDI* back to topmRNA from alignment at H-paniculata_contig11173:883..7465- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig11173.755.1 ID=mRNA_H-paniculata_contig11173.755.1|Name=mRNA_H-paniculata_contig11173.755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6583bp|location=Sequence derived from alignment at H-paniculata_contig11173:883..7465- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATGTCTCACCGCATCGTCGCAGGCGTATTTATAGTACATGCCTGTTGT
CGCCTTTCGCCGGTTCACCCATACGAAGCACAGACAGCAGAAGCTTCTGG
CTCACTTACGACGACACCTGGCCCGCCTGATGATCAGTAGTGGTTGACGA
AGGCTTGAGGTGATTGAGAAGAGAAACAAATATGAGGCAGACAGGAAAAA
CGCAAATAGAGTACGCAAAATCAGAAGCGACCCGAAAGTCGAATCCCAAC
AGGAGGAGGGCATCAAAGTGCAACAACGTATCACACCGCGCACCTCTGCA
AGGGCTTCACACGAACATGGGCCAGTATTGAAGCTATAAACAGTACAGTA
CGGTGTAGTACAGTGACACACACTTGACCCAGCACGTGCTATGAGGAGGG
CGTTTTTGATAGTCAGTGATGACCCCTATTCGTTCGCGTAAACGTTCGGC
GACAATGGTAGACCCCCTCAAGAACCCGCATCTTGGTATCTTAAAATTCT
TTGTGTCATTTGCTGTTTTGAGAAAATGACACAGCAAACCCCGCCTGGTG
GAAGGCACGTGGGCTACGGGAGTGAGGAATAGTCAGTTGAAAATAGTTCT
GAAGCTCACATAATAGCTTCACTGTATCCATATTGAGGCTAGCAGCTGAC
TTCAAACTTCGCTTGTTTACGTCTGTCGGAAAAATATGTAAGGGGTGTTA
TACATTGTCGACAGCGCATAAATGAGAATAGAACAGTTTGGCCATGTAGA
GAAATAGAGCGGTACCAAGATCATTCTGAAGAATGTTCTCTACTAGCAAG
TTGATTCCGCCGCCTTGTCCCGTCGTGCACCACAGTATTACAGCCCACCG
CTACACAAACCCGAGGCAAGTATACACCTCACACCTCCAGTTACCTCAAG
CACTCTTCTCCATCCTTCCATCGTATACGCAGTACTCTGGGAATAGGACT
TCCAATCTCTTCTAAAAAAATGTGCACTGCAAAGGAAGCTTCAACTCCTG
CATGCGGCAGCTCTCAAGATATGGTCAAAGCCGTCTCTTTCGGTGAGGCG
TGGGTGTGTCTGCAATCAGCAAACCTCGCATGCTCGCCCGATACATACAG
GCTACGTGAACAGTTTAGATGGGCCTGGGTTATCGAAAAGGAACCGTTCC
CAAGTGTTTCGATAGTAAGGATGTAGAGCCTACTCTATCACCATTGAGTT
GACGTGAATTGAATTATGTTGCCTGCATCAACTAATATTACAGTTTATCG
TCAATGGCTTTGCAGTGACATCTAGCTGGTACGAGTATTTAGCCGGCAGC
ATCATCGTGGTCAGATTCGGTATAGTGCAGCACCGATCGTAACCGTTGGT
AACACATACAAGCGGTCGGTATTGTTACATGTCGCGCGTGTGAGTAGAGA
GCCTGTAGACGGGGAAGAATGCAGAAAAATTAGTACGGTATGGTAATGCG
GTTGATGAATGCTGAGTTGCCTTTCCTCCTCTATCTCGGTCACGTTGGCC
ACAGACGATCTGGCGGTGGGAAGCGAGTCGAAGCTCCTTAATATTGAGGT
AGAACACCTACAACCGGCTAAGCCCGACAAGACCAGCGGCATGGTCGTTC
TCGGTGCCTTCGTAGCCGGCTCTCTCGTGGGGATCATCATCTGCGCGCCA
GCTTTCGTCGTCGTAGTTTTCGGTGCGGGCCTCGGGGGTCTGTGTCTTCG
TGACGGGAAGGTAGGATTGGAGCCATTTGTTGGTCGTTTTTGGAGTCCTC
AACTTGGGTGCACACGGTCAAACGGTTGTGGTCGAGTGCAGTATGTAGAT
GCACAACACGCAAGCTCTTTGTAGGTTCAAGATATTAAAATATGATTATC
TTGGCTGTAGAGTATATCACACGCATATCAGTACGAGGCAGGTCTGACAT
CTGCAATGTTGAAACGCGATAAATTTGTTCGATACGCTGAGAGCTAGAAT
TTAAGAATTAAGAACGGGGAGCGGATCGCTCGCGAGCCTCGACTCGGTAA
GAATTATCTCCCATGCTAAATTACACACCCCGAGTATTTCATCATTGTAT
GTCTGGTGTTTCAAAACGACCAGAGTAATCGGCGCTTCAGCACTACGAAA
TTAGGGTACAGTCAGTTGCAAACGGTCAGCACGGTAGCTGGCTTTCCAAC
ACAGGCAAGGAAGTATACACTTCGTGTCATATTGAAGAGCTGTTTTTCTG
TTGCGCATCTTGCAGTACACAACGAGCTAACAATGTTAACTGTGGTGGCC
ACACGCGAAATATTAAATTGATCCAACTTGAGCAAGAGGTATCAATCGAA
ACGGGTATCGACCGCGAGCCAGAGGCAGTAGTGCCAATGCCAATGTCAAC
AACGACCACATTATACTATTCTTGAGAATATATCTCGCGGGTCCCAAACA
CTAGGTGGGAGACTTTGCGCGGAAAGTCGGAGGCTTAGGAGGAAAAGTGA
TCCTGGCTGTGGTGAAGAAGACCCGCGAACTCAACGATCGTTTTCACATC
GCGGATAAGGTACGGGGCATCACGAGCGATGAATACATACATGTACCTCA
AAAAGACAGATATAAGATGTGTAACCACGATACTTTTTATGGCCGACCAG
TTCGATCACCAGGGGTATTTTCATGTGTGTCGCGTGCGTAGCGCCTCTCT
CATGGGGGGGTGCCTGTGTGCACAGCTACTTGGTCAGGAGCGCACGCGCG
CTCTTCTAGGTCTATTTCATCTGCCTGCGAACCTACTTCAACGCTAAGCT
CCCGTTCGCCGTGGCTCTGTGCTGCTAAGTTGTGAGTAATTAGGGTTTCC
GCGGTGATTTTCCGATTTGCTTACTTTCTTTCTTGACCGATGACGGCAAC
CGCCCATGGTGTCCTTGAACGACATAAAAATTGAAAGTATGCTATCCTCT
GCACCGATGTATTCGATGGTATCGATCGGTGCCGATACACAACCAGCCCT
GATAATTTCCATCAGTAGCGTTGTTCCCTCAATACACTCACTTCTAATAG
CCGTGTCTGTGTCAGTGCTCGATTCGAATGCGTGTACCGAACAAATCGCT
GTTGCCCACCATCATGTTTGCTACCATGAAGGCGAAAACCCTTGCCAAGG
ACACGGGGTCACGAATTCAGAAGGCGGACGAGAAGCGCGGGTTCAGCAAG
AACTTAAAGGCGAGAGCTTCGTCCTTGTGGTCACACATCGATGAGGTACG
CATGATTCTGTTTTACGACTGCGTTTTTCTGTGGTGCAAGGTATTTCAAG
CGGGCTTTTGAACTCTACTAGTAGAGTGGGGGGGGTCACGCTTAGAACGT
TGCTACGACGTTGACCATGTTTGACTGATTAAAATGTTGTTGCATTTTGG
GGGGATTCGTCGTTCGACAGAAGGCGTGGAGATGTATATGTTTTTCTAGT
GGATGGCGTGACGGTATGCTCACGACAGCCAACTTGTAGTTTAACAAGTC
CAGTCCCGCAAAATATGAACCTTGTTTTTGCCACAATCCAACAGTATAGT
TTTAGTCCATATATATGCAACAGAGGTCCATTGAGCCGCGTGTACCGTGG
GCAGGTTCATGGCGCTGTGTGTTGGGTTTTCACGAGTGGGAGCGACACCA
CTTGTACTTTAAAGCCGAGCCTTCTTCTCAGCACCTGTGACCAACAACAG
GGAAATACTTGAGTATCGCATGCCATAGCTTCCCAAAAATAACAAAATCA
GTGCCCGCATTGGTACCTGACAACAACGTCAACTGATTGAGGTATCGGCG
TAAGCCAGATTCTGGGGGTTACGAACTCCGGTCTATTTTCTTCCTTGAGC
TGTGCACTTGTCAGGAAAGTGATGAAGTGCTTTTATCTCCGTGAAAAACA
CCGTCTTGAACGTCCCCTTTTCTGCCAAACGCGTAACACAGAAAACAAGA
CCACGACGGGCCTTGGAGGAGCAGCGTCCGCCGGTGGAAACGAGTACTGT
CACCGATGGAACCCAGCTTCCCTTCGGGCAGCAGATACAGCGGACCGACA
TCTGAAAACTGGTCGTTGATATAGTCGAGAAGGGGCCGCGCAGATAGAGC
TTGATGCGTAAAGAAGCCCATTCCCGCCCGATGTTCATGTCGTGATGTCG
TGTTATGGTACGGTAGACTTGGCTTTCCAGGCAGTAGAGAAGGGCTTACG
AGGGACGAGCCGAGTATCTCGCCGAATCCGGGCCCTCTAATGGTGTCGCT
TAATTTATTCCATGGAAATTGGTACATGTTGTGTTCGATTGAATAAGAAG
CGGATATCCACGTTGAGTTGCCTGTTGCGAGGTTTTTGTAACATCAGCAG
AATCTTTTATGTGCAATATCAAACGAACTACGAGTTTTTTCAACGCACAT
GGTGTAAATTTGAGGGGGAAAGTGTGTCGTTTTCTTAGTCGTATTTTGTT
GTTTGGTTGTGTCTAGTGAGCGTTTGTTTCTGATTATTTGTTGTTGATTT
TTGGTTGGTTAATGGCGAGGACAAACAGCATTATTTTCCCGATATAATGA
CCGAAGCTCGAAGGATGGCTGCGTTAACTGCTTGTTCACCAAACGGTGTT
CGCATCCGCGACTCCGGCAAGCCAGAGCACCCGATAGACGAGTCATCTAA
AACGGCACGGTGTATTGCGTCGGTTGCCGCCATTTCGTCAGTCGCTCCAG
AGACCGTTTGGCAAGGTGATGTGTCTGGCCCGCGTGTGTAAGCCTCCCAG
AGCATGCCTCGATGCTTTTCCAACCCTCTACAGGGTCCGTGCACGTTTTC
TGATTTTTCGAAACAATCAGCCTTTCCCCCTATGTACCGCCGTTTTCGCA
TAGATCGGATTTTCGAAGACAAAAGAATGTCTGATTGGCCGCGCAACAAC
TTGAAAATTGTCGCAAAGTTTGACTGAAAATGAGCTTTTTGGACTTTTGG
GGTTATTAAGCAAGAGCTTTTGTTCCGAATTTTCGGTCATTGTAAGAAGT
ATCCACCCCGTGTGTAACGCCGTTATTGTATTTTTTTCTTGTGTGTATAC
TCGAACTGTGTTAATGGCGGTACATCGGGAGGGTTCTCTATTGTTTTTGT
AGCGTGGGCTCGCGAAATGGCCCTACGCGCTTTTCGTGTTCTGTGGCTAT
TTTTGCCTCGGTTAGTGTTGGCAGCAGGAGAAGACACAGGTATCTTCGCA
TAGTTGTCAATGGAACGTTCAACAACGCAAAGGTGCTAGCCCTACTGTAC
TGTTGACGTGTGCATTGTGATTGACGATTGTGCGGTTTGAAAGTGTTTGT
TGAAAACGGAAATAAGGACACATGCTCCGGAGTACTCGCGGAAAATTCGA
CCACGTCTTTTTGAAACAAAAAGAAACCGTTGGAACAGCCATGGGGAAAC
GGGGTAGAAAATAGAAAATATCGGAGGCAAGCATTCGTAAACGACGGCCC
TAGTTAAACAAGGCCCCCACTAACGGAAGACCCTGTTCTTAGGGGCGCCT
CGGGCGACAAGTCGTTCGTGTTCGTCATGCATCTTGTCCACGACCTGAGG
TGAAGGTGGGTGTAAAGTAGATATTGTTGGAAATCCATGCCTTTTTGTTA
ATTTTTTAATAGAACTTCGGAAAAAAATAAATGCCGAAAAACAGGAAAAG
GAGAAGCTGAACACCCTGTTCTCTTCGTTCGCCGATCAAATGCATCTAGT
TTAGATGAAGTTGGAGAAGCTAACCACGAGATTAGAAGTAAAAGAAGTAA
ACGAAGATCTAAGTGACCCGGCTACAGATTCTTTTCTTGTGTTGCCGATA
TTTTGACAAGCACAACAAATACTTTGAAAAATTACCCACGAAGGAGGTAT
TAGGGAGTTCCGGCGAAAAGAGGCAATGTGACTCAGAGTTGGGCGTAGAG
TCAGAAAAATTATCTGAGCCAAGAAGTTCGTGTGTTTGTTTTATTCCCTC
TATGCTCAAGAGTTTTCACGGGGTGGAATTTAAGATGACGTGATTCTCAG
GTACAAACCGCGCCACCTACCCAGAACCGGGTCTAGGTCATATACCTATT
TGAAAAACGGGACGTGGAGCCTACTGTACGGTCAATGCACTGTCATTCGA
ACGTCGCTCTGTATTGCTAGACTGCGGAGAATGGAGACCTAGCTCAGCAT
GTCTTGACTACGGATCCGGGAGCGGATCAAACGTAGGGTGGTTGCGATGG
GTTGGTTTCAGCTACAGATATTCTTTGCCCAACTCTGGTGCAACTGCCAC
AACTCGCACAGTCTTCGCTGTTGTCGAGCGCAGACTGTGTTTGTATTTAC
AGGCACTGGTGTTTTTGTGTGGTAGCTCTGTTGTATGTGTCTGTGTGTGT
GGGGGGAGAGTATGCCGATGTTTCGATATGGGACGGCTTGACATGTGATG
CCTCGGTGGTAGGACCCTGAGGAGTCTGAGGGGTAACAAAACACGCTGCG
AGTCAGAGCCCATATCTAACAGCATATTGGTGAAATGGGGACCCAAGTTT
GAGATGGGGACCCTGAGTTATCTTGGAAATACGCTGTATCCTAAAGATCC
GAAATTGATTTGAAGGAAAAGGCCTATTTCAAGATCCGAAATTGATTTGA
AGGAAAAGGCCTATTTCCAATATAATTCAGAGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig11173:883..7465- >mRNA_H-paniculata_contig11173.755.1 ID=mRNA_H-paniculata_contig11173.755.1|Name=mRNA_H-paniculata_contig11173.755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1224bp|location=Sequence derived from alignment at H-paniculata_contig11173:883..7465- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCACTGCAAAGGAAGCTTCAACTCCTGCATGCGGCAGCTCTCAAGA
TATGGTCAAAGCCGTCTCTTTCGATGTGCACTGCAAAGGAAGCTTCAACT
CCTGCATGCGGCAGCTCTCAAGATATGGTCAAAGCCGTCTCTTTCGACGA
TCTGGCGGTGGGAAGCGAGTCGAAGCTCCTTAATATTGAGGTAGAACACC
TACAACCGGCTAAGCCCGACAAGACCAGCGGCATGGTCGTTCTCGGTGCC
TTCGTAGCCGGCTCTCTCGTGGGGATCATCATCTGCGCGCCAGCTTTCGT
CGTCGTAGTTTTCGGTGCGGGCCTCGGGGGTCTGTGTCTTCGTGACGGGA
AGACGATCTGGCGGTGGGAAGCGAGTCGAAGCTCCTTAATATTGAGGTAG
AACACCTACAACCGGCTAAGCCCGACAAGACCAGCGGCATGGTCGTTCTC
GGTGCCTTCGTAGCCGGCTCTCTCGTGGGGATCATCATCTGCGCGCCAGC
TTTCGTCGTCGTAGTTTTCGGTGCGGGCCTCGGGGGTCTGTGTCTTCGTG
ACGGGAAGGTGGGAGACTTTGCGCGGAAAGTCGGAGGCTTAGGAGGAAAA
GTGATCCTGGCTGTGGTGAAGAAGACCCGCGAACTCAACGATCGTTTTCA
CATCGCGGATAAGGTGGGAGACTTTGCGCGGAAAGTCGGAGGCTTAGGAG
GAAAAGTGATCCTGGCTGTGGTGAAGAAGACCCGCGAACTCAACGATCGT
TTTCACATCGCGGATAAGGCGAAAACCCTTGCCAAGGACACGGGGTCACG
AATTCAGAAGGCGGACGAGAAGCGCGGGTTCAGCAAGAACTTAAAGGCGA
GAGCTTCGTCCTTGTGGTCACACATCGATGAGGCGAAAACCCTTGCCAAG
GACACGGGGTCACGAATTCAGAAGGCGGACGAGAAGCGCGGGTTCAGCAA
GAACTTAAAGGCGAGAGCTTCGTCCTTGTGGTCACACATCGATGAGAAAA
CAAGACCACGACGGGCCTTGGAGGAGCAGCGTCCGCCGGTGGAAACGAGT
ACTGTCACCGATGGAACCCAGCTTCCCTTCGGGCAGCAGATACAGCGGAC
CGACATCTGAAAAACAAGACCACGACGGGCCTTGGAGGAGCAGCGTCCGC
CGGTGGAAACGAGTACTGTCACCGATGGAACCCAGCTTCCCTTCGGGCAG
CAGATACAGCGGACCGACATCTGA back to top
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