mRNA_H-paniculata_contig2754.7538.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2754.7538.1
Unique NamemRNA_H-paniculata_contig2754.7538.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2754.7538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2754contigH-paniculata_contig2754:11523..12292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-26_000400.1
Exons2
Model size265
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929832.2947533-CDS-H-paniculata_contig2754:11522..116921622929832.2947533-CDS-H-paniculata_contig2754:11522..11692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2754 11523..11692 +
1691481030.6737013-CDS-H-paniculata_contig2754:11522..116921691481030.6737013-CDS-H-paniculata_contig2754:11522..11692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2754 11523..11692 +
1622929832.3300102-CDS-H-paniculata_contig2754:12198..122921622929832.3300102-CDS-H-paniculata_contig2754:12198..12292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2754 12199..12292 +
1691481030.687633-CDS-H-paniculata_contig2754:12198..122921691481030.687633-CDS-H-paniculata_contig2754:12198..12292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2754 12199..12292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2754.7538.1prot_H-paniculata_contig2754.7538.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2754 11523..12292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2754.7538.1

>prot_H-paniculata_contig2754.7538.1 ID=prot_H-paniculata_contig2754.7538.1|Name=mRNA_H-paniculata_contig2754.7538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
MHDCYDHMVALTHLFQEKGKVRSLFDLQLAQEALTGDTCNTMRDALNAFG
ACDNISTELSMGEDASMERPLDTSQLRIAANGVIRLRQ
back to top

mRNA from alignment at H-paniculata_contig2754:11523..12292+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2754.7538.1 ID=mRNA_H-paniculata_contig2754.7538.1|Name=mRNA_H-paniculata_contig2754.7538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=770bp|location=Sequence derived from alignment at H-paniculata_contig2754:11523..12292+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACGATTGCTACGACCATATGGTTGCTCTGACGCACCTGTTCCAAGA
GAAGGGGAAAGTGAGGTCGCTGTTCGACCTACAGTTGGCGCAGGAGGCTC
TCACGGGGGACACTTGCAACACGATGCGGGACGCCCTTAATGCCTTCGGG
GCGTGCGATAATATCTCCACGTGAGAGTCAACATATATATATATATATAT
TATTGTTTTCAAGTAGAGGTATCGCCAAAACTCGGCTAAATTTCCATGAA
GACAACGTAGAGGTGGTTGACCCAATCGCGAAACGAACGTAAGATTCTAA
GACCGGACGAAAAAGCGCGAACCTCCTCACCGCTCGTCGGTCGGAAAAAC
GATCACGCTGCGAAGCCTCTTGCAAAAAAGCAAAGAGCCTCACAGGGAGG
AGGAGGGGTGAAATGTCGAAAATATGTTTTTTATCACGAGATAATAACTA
TGATTTTCCTCAGGTGTTTGTAAAGGACGAACAAATAGCATTTTACCGTG
TTTTTTTATCGCATCGAGACTATATATTTCTTTTTCAAGCACACCAGGAA
ATAAATAGAGCTTATACAGTTCGCAAAGAAGCTGCACGCACGAGAAAACA
ATTAGAGGTTATAGACGAAAAGAACTCGTGTTGCTGTTGTTGCTGTTGTT
GCCGTAACCTCCGTGTCGCGTCCCAGCGAGCTCTCTATGGGCGAGGATGC
CTCGATGGAACGTCCGCTCGACACCAGCCAGCTGCGAATCGCCGCCAATG
GCGTCATCCGTCTCAGACAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2754:11523..12292+

>mRNA_H-paniculata_contig2754.7538.1 ID=mRNA_H-paniculata_contig2754.7538.1|Name=mRNA_H-paniculata_contig2754.7538.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig2754:11523..12292+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACGATTGCTACGACCATATGGTTGCTCTGACGCACCTGTTCCAAGA
GAAGGGGAAAGTGAGGTCGCTGTTCGACCTACAGTTGGCGCAGGAGGCTC
TCACGGGGGACACTTGCAACACGATGCGGGACGCCCTTAATGCCTTCGGG
GCGTGCGATAATATCTCCACATGCACGATTGCTACGACCATATGGTTGCT
CTGACGCACCTGTTCCAAGAGAAGGGGAAAGTGAGGTCGCTGTTCGACCT
ACAGTTGGCGCAGGAGGCTCTCACGGGGGACACTTGCAACACGATGCGGG
ACGCCCTTAATGCCTTCGGGGCGTGCGATAATATCTCCACCGAGCTCTCT
ATGGGCGAGGATGCCTCGATGGAACGTCCGCTCGACACCAGCCAGCTGCG
AATCGCCGCCAATGGCGTCATCCGTCTCAGACAGCGAGCTCTCTATGGGC
GAGGATGCCTCGATGGAACGTCCGCTCGACACCAGCCAGCTGCGAATCGC
CGCCAATGGCGTCATCCGTCTCAGACAG
back to top