mRNA_H-paniculata_contig2753.7535.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2753.7535.1
Unique NamemRNA_H-paniculata_contig2753.7535.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2753.7535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2753contigH-paniculata_contig2753:2806..3888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size199
Cds size171
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2753.7535.1prot_H-paniculata_contig2753.7535.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2753 2833..3888 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929831.9721022-UTR-H-paniculata_contig2753:2805..28321622929831.9721022-UTR-H-paniculata_contig2753:2805..2832Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2753 2806..2832 +
1691481030.5311391-UTR-H-paniculata_contig2753:2805..28321691481030.5311391-UTR-H-paniculata_contig2753:2805..2832Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2753 2806..2832 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929831.9927797-CDS-H-paniculata_contig2753:2832..29281622929831.9927797-CDS-H-paniculata_contig2753:2832..2928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2753 2833..2928 +
1691481030.5407314-CDS-H-paniculata_contig2753:2832..29281691481030.5407314-CDS-H-paniculata_contig2753:2832..2928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2753 2833..2928 +
1622929832.011339-CDS-H-paniculata_contig2753:3813..38881622929832.011339-CDS-H-paniculata_contig2753:3813..3888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2753 3814..3888 +
1691481030.5494182-CDS-H-paniculata_contig2753:3813..38881691481030.5494182-CDS-H-paniculata_contig2753:3813..3888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2753 3814..3888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2753.7535.1

>prot_H-paniculata_contig2753.7535.1 ID=prot_H-paniculata_contig2753.7535.1|Name=mRNA_H-paniculata_contig2753.7535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
MLDRISTVLRNLPGMTHAASCTMTLNQAIALQTYQLATQLNTWSMSNSSD
FILSAEQ
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mRNA from alignment at H-paniculata_contig2753:2806..3888+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2753.7535.1 ID=mRNA_H-paniculata_contig2753.7535.1|Name=mRNA_H-paniculata_contig2753.7535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1083bp|location=Sequence derived from alignment at H-paniculata_contig2753:2806..3888+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTACCGTTGTCGGATGGGGAAGTAGGAATGCTGGATAGGATTTCCACGGT
GTTGAGAAATCTACCAGGGATGACGCACGCGGCATCGTGCACCATGACCC
TAAATCAGGCAATTGCCCTTCAGGTGAAATCATCTCGGCAATAGTGGAGC
ATGTAGTGTTCTGGTGGTGTAGGTACCTACTTGTTAGCAGGTTAACCTTT
TGACCCTCTTTAGCACAGTCGTTGCCTCATCGTTCCTCGCCCCCGACGAC
ATCGTAGTACGATAGCCCACCCGATTTCTGCCTGCTTACACTCATGGTAG
AGCTTTAACACGCAAAGGCACGGGCATAAGAATATAGTTTGTCACCCTTC
TTTTCCAGTCCTTTCACGACTAAATAATGCGTCCATTCGTCAGAGCCCTG
CCAACGTTCGTACTTGGAGTATATCGTACGAAGGGTGCGTTTTTGCTCCC
GTTGCACATTGTATATCTGCAGTCGACTTGCAGCAGCGTGAAACGAGGGT
ATAGTTGGTCATGTGTTTAGCGTATACCGTATACATGTTGGAAATAGGCA
ATTTTTCAGCGCAGGAAGCATGATCCATTGCTGCCTTGAAAAAGTCAAAT
AGTTGAAACGTGTAGTTTGAAACGTGCTCGCCTCACAGTATCGGTCCTCT
TGTAGTCCTTCGGTTCGAAAAAAACGCAGTCTCGTAGGAACACAGCGCAC
ACGCATCAAATGGTAGTAAGGGATTGTGCTCTCTATCTTCTGTGTAGTGG
AGCTAGCTCGAAGCAGTTTGGACTGCAAGGGAGATGAACGAACACATGAA
AACAAGCAGCCAAAAAGCGCAGGCTAGACTCGGTTTTGGCATTATTTCAA
GGGAGCCAACAATACCGTATAAACAACTCGTACAACGGGGGCCGGAAGAT
AACAATTACATTTATCGATTGTTCGTTGAACGCTGCCACCACCACTCGAT
CACCATCTCCTTGCTGCACGACGGCAAACAACGCCTGCCGTGTGGGATAC
CCTACCAGACATACCAGCTGGCGACTCAATTGAACACCTGGAGCATGAGT
AACAGCTCCGATTTCATCCTAAGCGCGGAACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2753:2806..3888+

>mRNA_H-paniculata_contig2753.7535.1 ID=mRNA_H-paniculata_contig2753.7535.1|Name=mRNA_H-paniculata_contig2753.7535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig2753:2806..3888+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGGATAGGATTTCCACGGTGTTGAGAAATCTACCAGGGATGACGCA
CGCGGCATCGTGCACCATGACCCTAAATCAGGCAATTGCCCTTCAGATGC
TGGATAGGATTTCCACGGTGTTGAGAAATCTACCAGGGATGACGCACGCG
GCATCGTGCACCATGACCCTAAATCAGGCAATTGCCCTTCAGACATACCA
GCTGGCGACTCAATTGAACACCTGGAGCATGAGTAACAGCTCCGATTTCA
TCCTAAGCGCGGAACAGACATACCAGCTGGCGACTCAATTGAACACCTGG
AGCATGAGTAACAGCTCCGATTTCATCCTAAGCGCGGAACAG
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