mRNA_H-paniculata_contig2752.7534.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2752.7534.1
Unique NamemRNA_H-paniculata_contig2752.7534.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2752.7534.1 vs. uniprot
Match: D8LKP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKP8_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.700e-5
Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:  226 VFDAEAVL--GGLATLSLDDDPSGGWSHLQLDVQDTPGPAFENDVLRMNLMSGS 381
            +FDA A      +  LS+DD+PS GWS L+ DV   PGPAF+ D L M+L S S
Sbjct: 1058 LFDAHAAALQHDMQALSIDDEPSPGWSQLRTDVAGVPGPAFDGDALPMSLTSAS 1111
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2752.7534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKP8_ECTSI1.700e-550.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2752contigH-paniculata_contig2752:13907..16739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size391
Cds size390
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2752.7534.1prot_H-paniculata_contig2752.7534.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2752 13907..16739 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929831.8971462-CDS-H-paniculata_contig2752:13906..140391622929831.8971462-CDS-H-paniculata_contig2752:13906..14039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2752 13907..14039 +
1691481030.5040584-CDS-H-paniculata_contig2752:13906..140391691481030.5040584-CDS-H-paniculata_contig2752:13906..14039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2752 13907..14039 +
1622929831.9125226-CDS-H-paniculata_contig2752:15934..161241622929831.9125226-CDS-H-paniculata_contig2752:15934..16124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2752 15935..16124 +
1691481030.5132885-CDS-H-paniculata_contig2752:15934..161241691481030.5132885-CDS-H-paniculata_contig2752:15934..16124Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2752 15935..16124 +
1622929831.9245827-CDS-H-paniculata_contig2752:16672..167391622929831.9245827-CDS-H-paniculata_contig2752:16672..16739Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2752 16673..16739 +
1691481030.5221686-CDS-H-paniculata_contig2752:16672..167391691481030.5221686-CDS-H-paniculata_contig2752:16672..16739Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2752 16673..16739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2752.7534.1

>prot_H-paniculata_contig2752.7534.1 ID=prot_H-paniculata_contig2752.7534.1|Name=mRNA_H-paniculata_contig2752.7534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
SGSPGDLVVDLQRNLTGAGGKRGVGGGRSSGASFGGTPTHRSSTGIGSWA
DRLSNGTKKALSAGVEIADIHGSGKVFDAEAVLGGLATLSLDDDPSGGWS
HLQLDVQDTPGPAFENDVLRMNLMSGSPDA
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mRNA from alignment at H-paniculata_contig2752:13907..16739+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2752.7534.1 ID=mRNA_H-paniculata_contig2752.7534.1|Name=mRNA_H-paniculata_contig2752.7534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2833bp|location=Sequence derived from alignment at H-paniculata_contig2752:13907..16739+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGGTAGCCCAGGCGACCTTGTAGTTGACCTGCAACGCAACTTGACGGG
TGCTGGAGGTAAGAGAGGTGTCGGCGGCGGACGAAGCAGCGGTGCTTCTT
TCGGGGGCACGCCTACTCACCGCTCATCGACAGGTACATGGAGATGTGGC
TGTGTATACGGGCATCTTGCAGTATCGATAGGGAAAACAGGAGATAACGT
TATAATAGTAAACGACCCTCTCTAGCAGAACGCTTATCGGAGGGGTTCTC
GGTTGCCAACCACCCTCGCTAAGTCACTGGGCCAATAAACCCAACTGCTC
TAGCTAGCTGGAGACCTGGCGTGTTGAAAGGTTAGATGGCAGTGTATAAG
TATTAGGGCCATTCTACAAGTGAGTGTTCCCTCGCCTTTTTTCAGCCGTT
TTCGTCGTTTTTCCCTTTCCCGTAGTAAGACACTGATATTATCTCGGAAT
AATCGGAAATACTTGAAAGAGGTTGAGAAATATTGTAGCATGCAAGACTG
CTACATTTTGTTTCTGACATAACTAAAAAGATAAAAAGCGAGGATAAAAA
GAAAAAGTACCGGACAAGAGAAAAAAGCACCGACGTTTCGGACGCCCCTA
ATAGATGTATGCGAAGATCCTATCTTTCAATGCGCGATCTCTCCAGCTAG
CTAGATCGGTAAGATCTATTCGCTAGATTAGTTACCGTAGATGATTGACA
CACGGAAGACCTGCCTCTGAAGAGGTGTTCGACCAGGCAGGGGTCGTTAC
CAATACTTTCTCCTGTTCCCTGACATTTGGTTCCAGTAATATGCACGTTC
GTTATAATAATTTAGGGAAGCCATTCGGAGCCAAGGAAGTGTGATTTCCA
TTGATGATGCAGCGCTCTGCTTATACTCCCAAGTTCATTGATAAAACGAA
GAAAACATCTTCAACCGCTTGTGTCGCAATGTGCGCTAATAATGGGGTCA
TTACAGTATATCTGCGTTCACCGAAACGAGCGTTCACATTGGTTGTCGGC
ATGGCAAATAATTTTTCCGAACTGCGCTATTACAAGTTTGCTTGGATCCG
CTCTAGCATGCAGATAAAATCTTGTCTCTTGTCCTCCCCTTCTAGATTTA
GTATCTCTTCAGTATCGGGGTGGAGGCGAATTGATGACATCCCCCCAAGT
TGGAGAAGTCGAGAAAAACATTAATGAACGCCTTCCGGAACATCGACTCT
ATTCATTGTCGCTCCCGGTTTCCGCCCACCCCGATAGAATCGAAGAAAAA
GGGGGAAAAGAGAATCATGCAGAACCATGACCAACACTTGAGCGTCTCCA
CGTAGTAGCTACAGCCCCTCGTTTTGGAAAGATTATAGTATAGTCAGAAC
TTTCTTGCTCAACAAGTGGCTGCTACCTTTTTTTTTTTCAGCCGTTTGTA
CAGCGTTGTCAACTCCAGCGAAAGAATTTGCGTCCTCTGCCATTTGGGTG
AATCTTGATAGCGCAGCTATCGTGGGTATTATTTTTTCCGTTGGTTTTGT
TTTTTGTGTGGTGGTTTTGTTCGTCTGTGTGTGGATCGGTAATGAACTTG
AAACTCTCCTCAATTTTCCTCTCTTGTAGGATACCCTCGTGAGCTTCGTT
TCCTTGTTTTGAGCAAAGTAAGATATGGTTACCTTGGTAATCATCGTCGT
CGTCGTCGTCGTCGCCGTAGTAGTAGTATAGTACGACCACGAGTAGTTGT
TATGGTCGTTGGGCCATGCCGGTAAACTAATTGGATCGAAGCATTCACAT
TGTTTCCAAAACGGACCACCGTCTTTGCGAAAACTATCGGACAAAAACCG
AGCAATGCCTCCCGATATGTCAATCATCATGCTCCTTCCTGTATCTTCAT
AATCTGTTGTGAATGTTCAAACAAAGTCGATCGTTTGAGTCCCTTCATCC
CCACCCCCCCCAAAGAGAGATTGACTATCGGAAATCATTCTGATATATGA
ACACGCGTGGTCAACGGTCTAACAACTACAACATGCGAAACATGAATACG
CTCCCCCCCCCGGCGTTCTCGTGCCCAGGGATTGGCAGCTGGGCTGATCG
TCTTAGTAACGGTACGAAGAAGGCGTTGTCAGCTGGGGTTGAAATTGCTG
ATATCCATGGGTCTGGGAAGGTGTTTGACGCTGAAGCCGTGCTTGGTGGT
CTCGCAACGCTCAGCCTGGATGATGACCCTTCTGGCGGCTGGAGCCATCT
GCAGCTTGACGTCCAAGAGTGAGAAATAATTCGAGAAAAACATCGCGCGC
TCTCGCCCAACCCTTGGTTACTGTATATCAAGAGAAAGCAGTATTCTATT
CTGTTGGGGCCCGTGAACCTCTCACGATGTATACCCTGGTGTGTGTGCCT
TTACCTCCCGCACGGTAAGTACCACCGGGGATGCCCTCGAAACAGAAAGA
GAGTGTTTTTTAGTTTTTTTCGCACACAAGAACGTCGCCAGTTTCTCAAC
CATTCGCCACCTTCCGCCATCGCATAAGTAGCAACCGCTCTGGGTAGACG
CCTCATAGGGTTTTGATGTAACACTAGATGGACTATTCTCACGATCATAA
ATAGAATGTAGTAGAATCGGAATACTGTCACTACCCGCCGCTAGGGTTCC
CCCGATAGAATTCCGGTAACTTGTTCTGCAGAATGCTACATGTCTCTGTG
TATTTGTAGTACGTTACAAGAACCGGTCGAGCCGCTACTTCGTATTCCTT
ACGCGTTCAAGCAATCAACCATTTATGTGTCCCAATTACCTGTCCACGAT
GTGTCATTGTCCACAGCACACCCGGACCAGCCTTCGAAAACGATGTTTTA
CGCATGAACCTGATGTCTGGTTCACCAGATGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig2752:13907..16739+

>mRNA_H-paniculata_contig2752.7534.1 ID=mRNA_H-paniculata_contig2752.7534.1|Name=mRNA_H-paniculata_contig2752.7534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig2752:13907..16739+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGGGTAGCCCAGGCGACCTTGTAGTTGACCTGCAACGCAACTTGACGGG
TGCTGGAGGTAAGAGAGGTGTCGGCGGCGGACGAAGCAGCGGTGCTTCTT
TCGGGGGCACGCCTACTCACCGCTCATCGACAGTCGGGTAGCCCAGGCGA
CCTTGTAGTTGACCTGCAACGCAACTTGACGGGTGCTGGAGGTAAGAGAG
GTGTCGGCGGCGGACGAAGCAGCGGTGCTTCTTTCGGGGGCACGCCTACT
CACCGCTCATCGACAGGGATTGGCAGCTGGGCTGATCGTCTTAGTAACGG
TACGAAGAAGGCGTTGTCAGCTGGGGTTGAAATTGCTGATATCCATGGGT
CTGGGAAGGTGTTTGACGCTGAAGCCGTGCTTGGTGGTCTCGCAACGCTC
AGCCTGGATGATGACCCTTCTGGCGGCTGGAGCCATCTGCAGCTTGACGT
CCAAGAGGATTGGCAGCTGGGCTGATCGTCTTAGTAACGGTACGAAGAAG
GCGTTGTCAGCTGGGGTTGAAATTGCTGATATCCATGGGTCTGGGAAGGT
GTTTGACGCTGAAGCCGTGCTTGGTGGTCTCGCAACGCTCAGCCTGGATG
ATGACCCTTCTGGCGGCTGGAGCCATCTGCAGCTTGACGTCCAAGACACA
CCCGGACCAGCCTTCGAAAACGATGTTTTACGCATGAACCTGATGTCTGG
TTCACCAGATGCCCACACCCGGACCAGCCTTCGAAAACGATGTTTTACGC
ATGAACCTGATGTCTGGTTCACCAGATGCC
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