mRNA_H-paniculata_contig2751.7533.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2751.7533.1
Unique NamemRNA_H-paniculata_contig2751.7533.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2751.7533.1 vs. uniprot
Match: A0A6H5JTZ0_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ0_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 5.380e-84
Identity = 299/698 (42.84%), Postives = 367/698 (52.58%), Query Frame = 3 
Query:  102 HLVKVKLDGDLRIMEIPSPPLFDALVRATAEAYALQG--TEGFIYTYQDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXL------------RSREQQKSLATAPASMTLDHDVPSTEDYAIASGVSSVASVKD--DLMDVNLEADASS---DPTKSEENEIEIDGP--------AAFEVEAAAARDPEGSKLFQKGSIRLAKRYGVHLTPTQLWRVMTLFQIQGRQLVILGLAPGRALRGSAGGASSADMSASSEDDTCDNRDMRRGAKGVYVCGQRALVTSPVQRLLQLHGVEMAEDEVGPMLQALRVRPFRMIRLGLLSKHEVAEL-------------FAQEGRSVGGLGGAPFGHSLGRXXXXXXXXXXXXX------------PPLAHHRHLP--------------HHPMRGPPGXXXXXHPPMFGMPPHCILPMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSHAWNEDESGHGRRGGGFRHMHEFAAGCG--------------------------------GGGRGCHGRGGKKSMNMARFVEHRSPSPGNDVTRVVAGQNFQKSWLVRNDSSTPWPEEVSLVPVSRGCEHLSSPQEAAVVGAVAPGEEAEVSVDLIAPLQAGMYDGFWRTFGEG-RRFGQRLWAKVLVVRPGDDVGAHVGEDMNAGVKKLSLDD 1898
            HLVK+KLDGDLRIMEIP+PP FD LV+   +AY++     +   +TY+D                                          RS    ++ + AP S      +PST  YA+AS V S     D  D++ V++  +A++    P+    +  + DGP        AAFE EAAAARDPEGS L+QK S+RLAKR+ VHLTPTQLWRVM LFQIQGRQLV+ GLAP R+L  +A  AS  D+ +S E+   +     RG K         +V   VQRLL L+GVE+ EDEV P+LQALRVR  R++RLGLL    + ++                 G  + G G  P G   GR XXXXXXX    X            PP  HH+                 H        XXXXX                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       D   HG  G  F      A G G                                G  +   G+G K +M MARFV H S   G+DVT+V AGQ F+KSWLVRNDS+T WPE  SL+PVS+ C  LSSP EA +VG V+PGEE  VSVDL+AP Q GMY+G+WR   +  R+FGQRLWAKV+VV P        GE++NA V++LSL++
Sbjct:    3 HLVKIKLDGDLRIMEIPNPPRFDELVKTVMDAYSMPAGVEQQLTFTYKDNDGDEVRFDTNAELDLAIRTSSVPLRIMVANPPXXXXXXXXSRSTPNPEATSAAPPS------IPSTPGYAVASNVGSAVGGGDEPDMIMVDMPGEAAAAAAGPSGGSVDGSQADGPEKEAINPQAAFEAEAAAARDPEGSLLYQKASMRLAKRFKVHLTPTQLWRVMALFQIQGRQLVVFGLAPHRSLDAAAAAAS--DLDSSDEEGGENKPSAVRGLKRSKSQVAGTIVADHVQRLLGLNGVELPEDEVQPLLQALRVRSRRLVRLGLLGPEFLEDMPDGHYHRDAKGPRGGPPGHPMHGHGHGPGGRFAGRGXXXXXXXPPFGXXXXXXLMMPFHWPPPFHHQXXXXSGXXXXXVAEGATHRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMWQHGPPGYDFAGGFPGAPGAGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAKRGFGKGTKDNMAMARFVSHTS---GSDVTKVAAGQAFKKSWLVRNDSTTTWPETCSLIPVSQSCTDLSSPPEAPIVGDVSPGEEVTVSVDLVAPPQPGMYEGYWRACDDASRKFGQRLWAKVMVVGP--------GEEVNAAVERLSLEE 681
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BLAST of mRNA_H-paniculata_contig2751.7533.1 vs. uniprot
Match: D8LFK8_ECTSI (N_BRCA1_IG domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK8_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 7.380e-46
Identity = 89/147 (60.54%), Postives = 110/147 (74.83%), Query Frame = 3 
Query: 1461 GRGGKKSMNMARFVEHRSPSPGNDVTRVVAGQNFQKSWLVRNDSSTPWPEEVSLVPVSRGCEHLSSPQEAAVVGAVAPGEEAEVSVDLIAPLQAGMYDGFWRTFGEG-RRFGQRLWAKVLVVRPGDDVGAHVGEDMNAGVKKLSLDD 1898
            G+G K +M MARFV H S   G+DVT+V AGQ F+KSWLVRNDS+T WPE  SL+PVS+ C  LSSP EA +VG V+PGEEA VSVDL+AP Q GMY+G+WR   +  RRFGQRLWAKV+VV P        GE++NA V++LSL++
Sbjct:   73 GKGTKDNMAMARFVSHTS---GSDVTKVAAGQAFKKSWLVRNDSTTTWPETCSLIPVSQSCTDLSSPPEAPIVGDVSPGEEATVSVDLVAPPQPGMYEGYWRACDDASRRFGQRLWAKVMVVGP--------GEEVNAAVERLSLEE 208
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BLAST of mRNA_H-paniculata_contig2751.7533.1 vs. uniprot
Match: D8LFK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK7_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 9.370e-42
Identity = 121/262 (46.18%), Postives = 158/262 (60.31%), Query Frame = 3 
Query:  333 RSREQQKSLATAPASMTLDHDVPSTEDYAIASGVSSVASVKDD----LMDVNLEADASS--DPTKSEENEIEIDGP--------AAFEVEAAAARDPEGSKLFQKGSIRLAKRYGVHLTPTQLWRVMTLFQIQGRQLVILGLAPGRALRGSAGGASSADMSASSEDDTCDNRDMRRGAKGVYVCGQRALVTSPVQRLLQLHGVEMAEDEVGPMLQALRVRPFRMIRLGLLSKHEVAEL----FAQEGRSVGGLGGAPFGHSL 1064
            RS    ++ + AP S      +PST  YA+AS V SV    DD    ++D+  EA A++   P+    +  + DGP        AAFE EAAAARDPEGS L+QK S+RLAKR+ VHLTPTQLWRVM LFQIQGRQLV+ GLAP R+L  SA  A+S D+ +S E+   +     RG K       R +V   VQRLL L+GVE+  DEV P+LQALRVR  R++RLGLL    + ++    + ++G+   G  G P GH +
Sbjct:   67 RSTPNPEATSAAPPS------IPSTPGYAVASNVGSVVGGGDDADMIMVDMPGEAAAAAAAGPSGGSVDGSQADGPEKEAINPQAAFEAEAAAARDPEGSLLYQKSSMRLAKRFKVHLTPTQLWRVMALFQIQGRQLVVFGLAPHRSLDASASAAAS-DVDSSDEEGGENKPSAVRGLKRSKSQVARTIVADHVQRLLILNGVELPGDEVQPLLQALRVRSRRLVRLGLLGPEFLEDMPDGHYHRDGK---GPRGGPPGHPM 318
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BLAST of mRNA_H-paniculata_contig2751.7533.1 vs. uniprot
Match: A0A7S2AAX4_9EUKA (Hypothetical protein n=1 Tax=Stereomyxa ramosa TaxID=1078864 RepID=A0A7S2AAX4_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 1.920e-14
Identity = 47/119 (39.50%), Postives = 67/119 (56.30%), Query Frame = 3 
Query: 1473 KKSMNMARFVEHRSPSPGNDVTRVVAGQNFQKSWLVRNDSSTPWPEEVSLVPVSRGCEHLSSPQEAAVVG-AVAPGEEAEVSVDLIAPLQAGMYDGFWRTFGE-GRRFGQRLWAKVLVV 1823
            +++M   RFV+H S   G   T +  G  F K+W  RN+ +  WP    L+ +S+    + +  E   +G  V PGEE EVSV+++AP   G Y GFWR     GR+FGQR+W K+ VV
Sbjct:   89 RQNMLKGRFVKHVSIPDG---TELAPGDAFVKTWRFRNEGNLSWPAACYLLFISKRRGDMMTNTEKVFLGKVVGPGEEVEVSVNMVAPQPPGHYVGFWRMCSPTGRKFGQRVWVKINVV 204
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BLAST of mRNA_H-paniculata_contig2751.7533.1 vs. uniprot
Match: A0A1V9ZXC5_9STRA (UBA domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXC5_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.380e-13
Identity = 44/99 (44.44%), Postives = 59/99 (59.60%), Query Frame = 3 
Query: 1530 DVTRVVAGQNFQKSWLVRNDSSTPWPEEVSLVPVSRGCEHLSSPQEAAVVGAVAPGEEAEVSVDLIAPLQAGMYDGFWR-TFGEGRRFGQRLWAKVLVV 1823
            D + + AG NF K+W +RND  T WP +  L+ V  G  HL    E   V  + PG+  +VSV++ AP + G Y GFWR T  +G+RFG RLW  +LVV
Sbjct:  357 DGSTIRAGDNFIKTWRLRNDGKTRWPAKAELLCV--GGHHLEIETEPIFVPILPPGKMIDVSVEMQAPNKPGRYTGFWRLTTRDGKRFGHRLWVDILVV 453
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BLAST of mRNA_H-paniculata_contig2751.7533.1 vs. uniprot
Match: L8GDU9_ACACA (PB1 domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GDU9_ACACA)

HSP 1 Score: 83.6 bits (205), Expect = 7.860e-13
Identity = 49/141 (34.75%), Postives = 80/141 (56.74%), Query Frame = 3 
Query: 1491 ARFVEHRSPSPGNDVTRVVAGQNFQKSWLVRNDSSTPWPEEVSLVPVSR-GCEHLSSPQEAAVVGAVAPGEEAEVSVDLIAPLQAGMYDGFWRTFGEGRRFGQRLWAKVLVVRPGD-DVGAHVGEDMNAGVKKL-SLDD*N 1904
            ARFV+H S   G   T +     F K+W  RN+ + PWP+EV+L+ +S+   + + +P+   V   V PGEE +VSV +++P +AG Y  ++R     ++FGQR+W K+ V    + +  A   ++    VK++ SL D N
Sbjct:  280 ARFVKHVSIPDG---TEMAPDTPFTKTWRFRNEGTMPWPQEVTLMFISKINGDQMGAPEFVPVNTVVMPGEEVDVSVHMVSPSRAGHYQAYFRLCYGPKKFGQRVWIKINVACTSEAEAEAENDDEQVKSVKEIDSLVDDN 417
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BLAST of mRNA_H-paniculata_contig2751.7533.1 vs. uniprot
Match: A0A7S1C8U5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C8U5_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.360e-12
Identity = 48/119 (40.34%), Postives = 65/119 (54.62%), Query Frame = 3 
Query: 1470 GKKSMNMARFVEHRSPSPGNDVTRVVAGQNFQKSWLVRNDSSTPWPEEVSLVPVSRGCEHLSSPQEAAVVGAVAPGEEAEVSVDLIAPLQAGMYDGFWRTFGE--GRRFGQRLWAKVLV 1820
            GK     ARFV++ + + G     V  G    K+W VRND++  WP +V L   S       +P    V G +APG EA+VSV++  P +AG+Y GFWR       RRFG RLW +V+V
Sbjct:  128 GKLGAKAARFVKNVTLTTG---AAVAGGVASVKTWRVRNDAARAWPADVHLEFCSGDTGVAGAPTP--VRGGLAPGAEADVSVEVTPPTRAGLYKGFWRLVDSRAARRFGSRLWVQVMV 241
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BLAST of mRNA_H-paniculata_contig2751.7533.1 vs. uniprot
Match: Q55CE3_DICDI (Uncharacterized protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q55CE3_DICDI)

HSP 1 Score: 73.6 bits (179), Expect = 1.520e-9
Identity = 40/123 (32.52%), Postives = 61/123 (49.59%), Query Frame = 3 
Query: 1458 HGRGGKKSMNMARFVEHRSPSPGNDVTRVVAGQNFQKSWLVRNDSSTPWPEEVSLVPVSRGCEHLSSPQEAAVVGAVAPGEEAEVSVDLIAPLQAGMYDGFWR-TFGEGRRFGQRLWAKVLVV 1823
            HG GG +         + +     D + +  G +F K+W +RND  T WPE  +L  +S         Q    V    PG++ ++SVDL+AP + G Y G+WR +  EG  FGQ +W  + V+
Sbjct:  317 HGFGGGRCTRKVYAARYLADISIKDGSVIPKGSSFTKTWRLRNDGKTSWPENTTLSFLSGDRFQY---QTDIFVPVCQPGQDIDISVDLVAPTKTGRYTGYWRLSTPEGFGFGQSIWVDIYVI 436
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BLAST of mRNA_H-paniculata_contig2751.7533.1 vs. uniprot
Match: A0A160T6P4_9CHLR (Uncharacterized protein n=1 Tax=Candidatus Promineofilum breve TaxID=1806508 RepID=A0A160T6P4_9CHLR)

HSP 1 Score: 72.0 bits (175), Expect = 5.070e-9
Identity = 41/106 (38.68%), Postives = 55/106 (51.89%), Query Frame = 3 
Query: 1509 RSPSPGNDVTRVVAGQNFQKSWLVRNDSSTPWPEEVSLVPVSRGCEHLSSPQEAAVV-GAVAPGEEAEVSVDLIAPLQAGMYDGFWRTFG-EGRRFGQRLWAKVLV 1820
            R+P P      +  G  FQKSW ++N+ +  W E   L PV       S      VV G VAPG+  +V+V+L+APL  G+Y GFW   G  G  FG R+W  + V
Sbjct:  353 RAPPP------ISPGTPFQKSWRLQNNGTCTWGEGYVLTPVGGNVPQASMGGAPTVVPGPVAPGQTVDVTVNLVAPLLPGVYQGFWTMRGPNGLLFGDRIWVGITV 452
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BLAST of mRNA_H-paniculata_contig2751.7533.1 vs. uniprot
Match: K5WC34_PHACS (Uncharacterized protein n=1 Tax=Phanerochaete carnosa (strain HHB-10118-sp) TaxID=650164 RepID=K5WC34_PHACS)

HSP 1 Score: 72.0 bits (175), Expect = 6.230e-9
Identity = 42/104 (40.38%), Postives = 57/104 (54.81%), Query Frame = 3 
Query: 1530 DVTRVVAGQNFQKSWLVRNDSSTPWPEEVSLVPVSRGCEHLSSPQEAAV---VGAVAPGEEAE-VSVDLIAPLQAGMYDGFWRTFGEGRRFGQRLWAKVLVVRP 1829
            D T    G  F KSW++RND  T WPEE +L  V+   + + S + AAV   VG V PG EAE V+ ++ AP  +G Y  +WR       FG  +W  ++VV P
Sbjct:  909 DGTVFPPGAEFVKSWVMRNDGETAWPEETTLRYVAG--DRMMSRESAAVRMPVGCVPPGAEAELVASEMKAPDVSGKYVSYWRLHDGKEFFGSSIWVDIVVVEP 1010
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2751.7533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTZ0_9PHAE5.380e-8442.84PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LFK8_ECTSI7.380e-4660.54N_BRCA1_IG domain-containing protein n=1 Tax=Ectoc... [more]
D8LFK7_ECTSI9.370e-4246.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2AAX4_9EUKA1.920e-1439.50Hypothetical protein n=1 Tax=Stereomyxa ramosa Tax... [more]
A0A1V9ZXC5_9STRA3.380e-1344.44UBA domain-containing protein n=1 Tax=Thraustothec... [more]
L8GDU9_ACACA7.860e-1334.75PB1 domain containing protein n=1 Tax=Acanthamoeba... [more]
A0A7S1C8U5_9STRA1.360e-1240.34Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
Q55CE3_DICDI1.520e-932.52Uncharacterized protein n=1 Tax=Dictyostelium disc... [more]
A0A160T6P4_9CHLR5.070e-938.68Uncharacterized protein n=1 Tax=Candidatus Promine... [more]
K5WC34_PHACS6.230e-940.38Uncharacterized protein n=1 Tax=Phanerochaete carn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2751contigH-paniculata_contig2751:13565..17617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.5
Seed ortholog evalue1.5e-40
Seed eggNOG ortholog2880.D8LFK8
KEGG koko:K17987
KEGG Pathwayko04137,map04137
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005773,GO:0005829,GO:0006914,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016043,GO:0016236,GO:0022607,GO:0031410,GO:0031982,GO:0032182,GO:0034622,GO:0043130,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044248,GO:0044424,GO:0044444,GO:0044464,GO:0051258,GO:0051259,GO:0061919,GO:0065003,GO:0071840,GO:0097708
EggNOG free text desc.ubiquitin binding
EggNOG OGsKOG4351@1,KOG4351@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04131
Exons2
Model size3290
Cds size1812
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2751.7533.1prot_H-paniculata_contig2751.7533.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2751 14954..17528 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929831.8143423-UTR-H-paniculata_contig2751:13564..149531622929831.8143423-UTR-H-paniculata_contig2751:13564..14953Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2751 13565..14953 -
1691481030.4638934-UTR-H-paniculata_contig2751:13564..149531691481030.4638934-UTR-H-paniculata_contig2751:13564..14953Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2751 13565..14953 -
1622929831.8592002-UTR-H-paniculata_contig2751:17528..176171622929831.8592002-UTR-H-paniculata_contig2751:17528..17617Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2751 17529..17617 -
1691481030.4950767-UTR-H-paniculata_contig2751:17528..176171691481030.4950767-UTR-H-paniculata_contig2751:17528..17617Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2751 17529..17617 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929831.829438-CDS-H-paniculata_contig2751:14953..165971622929831.829438-CDS-H-paniculata_contig2751:14953..16597Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2751 14954..16597 -
1691481030.4767625-CDS-H-paniculata_contig2751:14953..165971691481030.4767625-CDS-H-paniculata_contig2751:14953..16597Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2751 14954..16597 -
1622929831.8427284-CDS-H-paniculata_contig2751:17360..175281622929831.8427284-CDS-H-paniculata_contig2751:17360..17528Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2751 17361..17528 -
1691481030.486384-CDS-H-paniculata_contig2751:17360..175281691481030.486384-CDS-H-paniculata_contig2751:17360..17528Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2751 17361..17528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2751.7533.1

>prot_H-paniculata_contig2751.7533.1 ID=prot_H-paniculata_contig2751.7533.1|Name=mRNA_H-paniculata_contig2751.7533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=604bp
MTAVHLVKVKLDGDLRIMEIPSPPLFDALVRATAEAYALQGTEGFIYTYQ
DADADQVRFDADSELDLAVRTSPAPLKITVLRSREQQKSLATAPASMTLD
HDVPSTEDYAIASGVSSVASVKDDLMDVNLEADASSDPTKSEENEIEIDG
PAAFEVEAAAARDPEGSKLFQKGSIRLAKRYGVHLTPTQLWRVMTLFQIQ
GRQLVILGLAPGRALRGSAGGASSADMSASSEDDTCDNRDMRRGAKGVYV
CGQRALVTSPVQRLLQLHGVEMAEDEVGPMLQALRVRPFRMIRLGLLSKH
EVAELFAQEGRSVGGLGGAPFGHSLGRGRGGGRGKGRGRGPPLAHHRHLP
HHPMRGPPGGGGRHHPPMFGMPPHCILPMSGGYAHGYRHQPPAHGIGFHG
KEFEGGGEWHDLMRGPPPGGFSHAWNEDESGHGRRGGGFRHMHEFAAGCG
GGGRGCHGRGGKKSMNMARFVEHRSPSPGNDVTRVVAGQNFQKSWLVRND
SSTPWPEEVSLVPVSRGCEHLSSPQEAAVVGAVAPGEEAEVSVDLIAPLQ
AGMYDGFWRTFGEGRRFGQRLWAKVLVVRPGDDVGAHVGEDMNAGVKKLS
LDD*
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mRNA from alignment at H-paniculata_contig2751:13565..17617-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2751.7533.1 ID=mRNA_H-paniculata_contig2751.7533.1|Name=mRNA_H-paniculata_contig2751.7533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4053bp|location=Sequence derived from alignment at H-paniculata_contig2751:13565..17617- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGACAAACCATCAACCAATTGTCTAGGTTACAAGGCGATTAGCAAGAGA
AAAAGAAATATAATTGACGGCGAAAATAACTACTGCGAAATGACTGCAGT
TCATCTCGTGAAGGTCAAGTTGGATGGAGACCTCCGCATCATGGAGATCC
CCTCCCCTCCTCTCTTCGACGCTCTCGTGAGGGCAACTGCTGAAGCCTAT
GCCCTGCAAGGAACAGAGGGGTTCATTTACACATACCAGGATGCTGACGC
TGACCAGGTAAATTCAACCGCGTGTTCTTGTCGCGAAAGCTACTTCATTT
GAGGTGGCGTAAGTAGTCCTCCACTGTAAACTCTTGTTAATATGGTCGTG
TTATCCTCGTGACATCGGTACGCTGTTACCCAGCAGTCACCTTGAGATGA
TGATTTGACTTCATGGTAAGTGGAGTTAAAAATGAGTAAACCCCGAAGAA
CATAGCGCAGCTCGAGTATGTCCCTATATAACAGGGTGTGTCTAGTGGCA
TTCAGGCCAACGCTTGTGCCCCATGTCCCTCTTACAGTTTCTGGTTTTTA
CCCTTGAAATCCTGCACCTCTTGAGATTGTGTCTGCGCCCTTCCTAAGTG
CCTTGGACTTGCCTTCTTTGAAAAAATAAGTAGATGAATCTGGTGAACGC
AACCCTCCCTCCTACTTTCATACGAGTGATAACCTACTGTCCTTCGATGC
GATACTCATAAGCACCTGACGTGAGGAGCTAAATGTACGCTTATAGCCCG
TCCGAATAGTCTCGTGAGATTATCGTTTATTTATTGATGAAACAAGGACC
CGTCCAATCCTGGAGTTGGACGCTTGCGAGAGATGAAAAATAAACGTTTA
TTTCAATCAACTTTTGACGGCTCTGCAACAGGTTGCGTGGTTGATTGTGA
TCACTGATTGTAAGGCTTGTTCCGAAAGTTGGTCTAAAATTGTGTATGAA
ATCATCGAGGGTCTTTCCTGTACTTCACTTCGCCCCGGATTTTTCGTGTT
TGGTCTTTCCATGTACCCAGGTGCGCTTCGATGCGGATTCCGAGCTTGAC
CTGGCGGTTCGCACCTCCCCCGCCCCGCTGAAGATAACCGTTCTACGCTC
GCGCGAGCAGCAGAAGAGTCTCGCCACAGCCCCTGCTTCGATGACACTCG
ACCATGATGTACCTTCTACAGAGGATTATGCAATTGCTTCAGGCGTTAGT
TCGGTCGCTAGCGTTAAAGATGACCTGATGGATGTTAATCTCGAGGCTGA
TGCTTCGAGTGACCCCACCAAGTCGGAAGAGAATGAGATCGAGATTGACG
GGCCAGCTGCTTTTGAGGTAGAGGCTGCAGCAGCCCGAGACCCGGAGGGT
AGTAAGCTGTTCCAAAAGGGGTCCATTCGCCTCGCCAAGCGCTACGGCGT
ACACCTCACTCCCACCCAGTTGTGGCGCGTCATGACTCTGTTCCAGATTC
AGGGCAGGCAGCTCGTAATCTTGGGACTGGCCCCTGGCCGAGCGCTAAGA
GGTTCTGCAGGTGGTGCCTCTTCGGCCGATATGAGCGCCTCTTCTGAGGA
TGACACCTGTGACAACAGAGACATGAGACGTGGTGCGAAGGGCGTCTACG
TCTGCGGCCAGCGTGCCCTCGTGACTAGTCCTGTCCAACGCCTCTTGCAA
CTTCATGGTGTAGAGATGGCCGAGGATGAAGTGGGCCCCATGCTACAGGC
GCTCCGTGTCCGTCCATTCCGCATGATCAGGCTAGGGCTACTAAGCAAGC
ATGAGGTAGCAGAGCTCTTCGCGCAGGAAGGCCGCAGCGTCGGTGGTCTC
GGCGGTGCGCCGTTCGGTCACTCTCTAGGTCGTGGCCGCGGTGGGGGTCG
GGGCAAAGGGAGGGGGAGGGGTCCTCCATTGGCCCACCACAGGCACCTTC
CTCACCATCCGATGCGTGGACCTCCGGGTGGTGGAGGCCGCCACCACCCG
CCTATGTTTGGCATGCCCCCTCACTGCATCCTACCTATGTCAGGTGGGTA
CGCGCATGGCTACCGTCACCAACCGCCTGCCCATGGAATTGGCTTTCACG
GCAAGGAGTTTGAGGGCGGGGGTGAATGGCACGATCTGATGCGGGGCCCG
CCTCCTGGTGGTTTCTCCCACGCCTGGAATGAGGATGAATCGGGCCATGG
CCGCCGCGGCGGTGGCTTCCGACACATGCACGAGTTTGCTGCGGGTTGCG
GTGGTGGTGGCCGGGGCTGCCATGGTAGGGGTGGGAAAAAATCCATGAAC
ATGGCGAGGTTTGTGGAGCACCGCAGCCCCTCTCCCGGCAACGACGTCAC
GCGCGTTGTTGCAGGCCAAAACTTCCAGAAGTCGTGGCTGGTGCGGAACG
ATTCGTCCACCCCCTGGCCCGAGGAAGTCTCTCTTGTTCCCGTGAGCCGC
GGCTGCGAACACCTCTCTTCTCCTCAGGAGGCGGCCGTGGTGGGGGCAGT
CGCTCCAGGAGAGGAAGCCGAGGTGTCGGTCGATCTGATCGCCCCGCTCC
AGGCGGGCATGTATGATGGATTCTGGCGCACCTTTGGTGAGGGGCGCAGG
TTCGGTCAGAGGCTCTGGGCGAAGGTGCTAGTAGTGAGGCCTGGAGATGA
TGTGGGTGCCCACGTTGGCGAAGATATGAATGCAGGAGTGAAGAAGCTGT
CCTTGGATGACTGAAACAAGGCCAAGTAAATCACAAGTAAAATGAAACGT
ACTGTTGTTGGTGCTGCTGTTGTGGTCCCTGCCCCTCCCTGTCATGGTTT
CTTGTGATCAGCTTGATTCCATAGACCAGACAGAGGTGGTTCCCGAACAG
AAGTCATGTACAGCGCGCGTTTGGGCTTCTGTGCCCCTGCAATCACATGC
TTTATTTTTGATTGTTGATGTTGAACTCGGAGTTGTGTGCACGGTAAATT
CTGGTGATGTGCTCGGGCGTAGGCGCCGAAGTGTTTTGGAGTAACACCGT
TTACAGTGTTGGTCGGAACGAGTTCTGTATGGGTGTATATTCTTGGGTCG
ACTCTGACGCGAAAACGGGCAGCGTCTCGACGAAAGCAACATTTTGTAGG
AAACCCGCAGTATATGGTGGCTGCGGATTTTAAGTACAGTATCTACAATT
TGCTTCGATATTTGGTCATTGCGGGTATGCATGGTCAACTTCGTCTTTTA
GCTGAAGGCGGAAGTACTACTTGTTGGATATTTGAATCAACTCAAGAGCG
CGAAAACGGGTAGCGTGTTGACAGTGACACGATATCGTCGGATTGGCTGC
ACGGTATTGTGATGTCTTCGACTTGCTTAAATGTCATGACCCTCGTGGTC
AAGTAATTTAGATATGGATATTGAAGTTGCGAGTACTTCAAAAATGAACG
TATTTCAGTCAAATTCGCACTTGCGATACGGTAAAAATGTGTGTCCGAAC
CAAAGCAGAAGAACGTTGAACGCGTTGGCTATCTGCCGGTTTTGGGCGAC
AGTGCTTGAACGGCTACCGTGGCTTCGTTGAAATAGCCAAAGGAAAGACA
GCCGAGGAGAAAAAGGAGTATATGACTTGTTCAGGGAACTCTCTGGTTGA
GGAATTTATGTAACGTCTGTAGAAGCGAAAATATTTCGAGGAAGATAAAA
AAAAGGTCGTGAAATCGGTGTTGATTGCATCTTGTAATCACGGAAGTGAG
TAAGGCATGGGTAGAAGTTGAATTCGCGAGGTACTGAATATTTTGGGTGC
AAGCTATCGTACTGGTTTTCAAGATGAACATATGTTCGTACACGGACATG
ATCATGATGGGGAGGAAATCGGCTTGTGCTCCACAGGCGTGTACTTTTTA
TGTTACGTAGCAATCGGAATTCTGAACTAATACAATATGGTTATAGAAAA
TCGTGTGTTCGAGGAAGAACATTTTGACAAAATCTGATCATGTACCGCAT
ATCTGTAGTGCACTAATGACCATGTCCTTGCGGTAGAACCGTTGACAAGT
ATCAAGAGAAAAATTGGAAAAAGGACATATTTAGATTTGTTACATCAAAT
ATGTTCTTAATCAAAATGACGATGATAATAAAAGGAGAATAAGCTCGTAT
ATC
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Coding sequence (CDS) from alignment at H-paniculata_contig2751:13565..17617-

>mRNA_H-paniculata_contig2751.7533.1 ID=mRNA_H-paniculata_contig2751.7533.1|Name=mRNA_H-paniculata_contig2751.7533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3624bp|location=Sequence derived from alignment at H-paniculata_contig2751:13565..17617- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGCAGTTCATCTCGTGAAGGTCAAGTTGGATGGAGACCTCCGCAT
CATGGAGATCCCCTCCCCTCCTCTCTTCGACGCTCTCGTGAGGGCAACTG
CTGAAGCCTATGCCCTGCAAGGAACAGAGGGGTTCATTTACACATACCAG
GATGCTGACGCTGACCAGATGACTGCAGTTCATCTCGTGAAGGTCAAGTT
GGATGGAGACCTCCGCATCATGGAGATCCCCTCCCCTCCTCTCTTCGACG
CTCTCGTGAGGGCAACTGCTGAAGCCTATGCCCTGCAAGGAACAGAGGGG
TTCATTTACACATACCAGGATGCTGACGCTGACCAGGTGCGCTTCGATGC
GGATTCCGAGCTTGACCTGGCGGTTCGCACCTCCCCCGCCCCGCTGAAGA
TAACCGTTCTACGCTCGCGCGAGCAGCAGAAGAGTCTCGCCACAGCCCCT
GCTTCGATGACACTCGACCATGATGTACCTTCTACAGAGGATTATGCAAT
TGCTTCAGGCGTTAGTTCGGTCGCTAGCGTTAAAGATGACCTGATGGATG
TTAATCTCGAGGCTGATGCTTCGAGTGACCCCACCAAGTCGGAAGAGAAT
GAGATCGAGATTGACGGGCCAGCTGCTTTTGAGGTAGAGGCTGCAGCAGC
CCGAGACCCGGAGGGTAGTAAGCTGTTCCAAAAGGGGTCCATTCGCCTCG
CCAAGCGCTACGGCGTACACCTCACTCCCACCCAGTTGTGGCGCGTCATG
ACTCTGTTCCAGATTCAGGGCAGGCAGCTCGTAATCTTGGGACTGGCCCC
TGGCCGAGCGCTAAGAGGTTCTGCAGGTGGTGCCTCTTCGGCCGATATGA
GCGCCTCTTCTGAGGATGACACCTGTGACAACAGAGACATGAGACGTGGT
GCGAAGGGCGTCTACGTCTGCGGCCAGCGTGCCCTCGTGACTAGTCCTGT
CCAACGCCTCTTGCAACTTCATGGTGTAGAGATGGCCGAGGATGAAGTGG
GCCCCATGCTACAGGCGCTCCGTGTCCGTCCATTCCGCATGATCAGGCTA
GGGCTACTAAGCAAGCATGAGGTAGCAGAGCTCTTCGCGCAGGAAGGCCG
CAGCGTCGGTGGTCTCGGCGGTGCGCCGTTCGGTCACTCTCTAGGTCGTG
GCCGCGGTGGGGGTCGGGGCAAAGGGAGGGGGAGGGGTCCTCCATTGGCC
CACCACAGGCACCTTCCTCACCATCCGATGCGTGGACCTCCGGGTGGTGG
AGGCCGCCACCACCCGCCTATGTTTGGCATGCCCCCTCACTGCATCCTAC
CTATGTCAGGTGGGTACGCGCATGGCTACCGTCACCAACCGCCTGCCCAT
GGAATTGGCTTTCACGGCAAGGAGTTTGAGGGCGGGGGTGAATGGCACGA
TCTGATGCGGGGCCCGCCTCCTGGTGGTTTCTCCCACGCCTGGAATGAGG
ATGAATCGGGCCATGGCCGCCGCGGCGGTGGCTTCCGACACATGCACGAG
TTTGCTGCGGGTTGCGGTGGTGGTGGCCGGGGCTGCCATGGTAGGGGTGG
GAAAAAATCCATGAACATGGCGAGGTTTGTGGAGCACCGCAGCCCCTCTC
CCGGCAACGACGTCACGCGCGTTGTTGCAGGCCAAAACTTCCAGAAGTCG
TGGCTGGTGCGGAACGATTCGTCCACCCCCTGGCCCGAGGAAGTCTCTCT
TGTTCCCGTGAGCCGCGGCTGCGAACACCTCTCTTCTCCTCAGGAGGCGG
CCGTGGTGGGGGCAGTCGCTCCAGGAGAGGAAGCCGAGGTGTCGGTCGAT
CTGATCGCCCCGCTCCAGGCGGGCATGTATGATGGATTCTGGCGCACCTT
TGGTGAGGGGCGCAGGTTCGGTCAGAGGCTCTGGGCGAAGGTGCTAGTAG
TGAGGCCTGGAGATGATGTGGGTGCCCACGTTGGCGAAGATATGAATGCA
GGAGTGAAGAAGCTGTCCTTGGATGACTGAGTGCGCTTCGATGCGGATTC
CGAGCTTGACCTGGCGGTTCGCACCTCCCCCGCCCCGCTGAAGATAACCG
TTCTACGCTCGCGCGAGCAGCAGAAGAGTCTCGCCACAGCCCCTGCTTCG
ATGACACTCGACCATGATGTACCTTCTACAGAGGATTATGCAATTGCTTC
AGGCGTTAGTTCGGTCGCTAGCGTTAAAGATGACCTGATGGATGTTAATC
TCGAGGCTGATGCTTCGAGTGACCCCACCAAGTCGGAAGAGAATGAGATC
GAGATTGACGGGCCAGCTGCTTTTGAGGTAGAGGCTGCAGCAGCCCGAGA
CCCGGAGGGTAGTAAGCTGTTCCAAAAGGGGTCCATTCGCCTCGCCAAGC
GCTACGGCGTACACCTCACTCCCACCCAGTTGTGGCGCGTCATGACTCTG
TTCCAGATTCAGGGCAGGCAGCTCGTAATCTTGGGACTGGCCCCTGGCCG
AGCGCTAAGAGGTTCTGCAGGTGGTGCCTCTTCGGCCGATATGAGCGCCT
CTTCTGAGGATGACACCTGTGACAACAGAGACATGAGACGTGGTGCGAAG
GGCGTCTACGTCTGCGGCCAGCGTGCCCTCGTGACTAGTCCTGTCCAACG
CCTCTTGCAACTTCATGGTGTAGAGATGGCCGAGGATGAAGTGGGCCCCA
TGCTACAGGCGCTCCGTGTCCGTCCATTCCGCATGATCAGGCTAGGGCTA
CTAAGCAAGCATGAGGTAGCAGAGCTCTTCGCGCAGGAAGGCCGCAGCGT
CGGTGGTCTCGGCGGTGCGCCGTTCGGTCACTCTCTAGGTCGTGGCCGCG
GTGGGGGTCGGGGCAAAGGGAGGGGGAGGGGTCCTCCATTGGCCCACCAC
AGGCACCTTCCTCACCATCCGATGCGTGGACCTCCGGGTGGTGGAGGCCG
CCACCACCCGCCTATGTTTGGCATGCCCCCTCACTGCATCCTACCTATGT
CAGGTGGGTACGCGCATGGCTACCGTCACCAACCGCCTGCCCATGGAATT
GGCTTTCACGGCAAGGAGTTTGAGGGCGGGGGTGAATGGCACGATCTGAT
GCGGGGCCCGCCTCCTGGTGGTTTCTCCCACGCCTGGAATGAGGATGAAT
CGGGCCATGGCCGCCGCGGCGGTGGCTTCCGACACATGCACGAGTTTGCT
GCGGGTTGCGGTGGTGGTGGCCGGGGCTGCCATGGTAGGGGTGGGAAAAA
ATCCATGAACATGGCGAGGTTTGTGGAGCACCGCAGCCCCTCTCCCGGCA
ACGACGTCACGCGCGTTGTTGCAGGCCAAAACTTCCAGAAGTCGTGGCTG
GTGCGGAACGATTCGTCCACCCCCTGGCCCGAGGAAGTCTCTCTTGTTCC
CGTGAGCCGCGGCTGCGAACACCTCTCTTCTCCTCAGGAGGCGGCCGTGG
TGGGGGCAGTCGCTCCAGGAGAGGAAGCCGAGGTGTCGGTCGATCTGATC
GCCCCGCTCCAGGCGGGCATGTATGATGGATTCTGGCGCACCTTTGGTGA
GGGGCGCAGGTTCGGTCAGAGGCTCTGGGCGAAGGTGCTAGTAGTGAGGC
CTGGAGATGATGTGGGTGCCCACGTTGGCGAAGATATGAATGCAGGAGTG
AAGAAGCTGTCCTTGGATGACTGA
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