mRNA_H-paniculata_contig2751.7531.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2751.7531.1
Unique NamemRNA_H-paniculata_contig2751.7531.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2751.7531.1 vs. uniprot
Match: A0A6H5JTC2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTC2_9PHAE)

HSP 1 Score: 250 bits (638), Expect = 2.300e-80
Identity = 134/244 (54.92%), Postives = 166/244 (68.03%), Query Frame = 1 
Query:    1 ELMCSRCYKRESCVRCCGIRFCLRHFHTSNHSSEHPHKAIVVNQEALDKQLPAFQEMWREAFQSVADDVERISQEIGERVAQDPLASIGMPRPAKPRSSGRSGKGSGDANGRSESSTAKRLRREEEKGEPSVKAAAL--ADPFARRRSRPQSYWSIG--------AEGTSSLSEETNSMAPPPATAHMGEYKCELCESMDTSFDIVGGAAGNSRKSETFGNKDAPELVLRVVCHACGYTWMEER 702
            EL+CSRCYKRESCV+CCG R+CLRHFHTSNHSS+HP KAIV+N+ ALD QLPAF+EMWREAFQSVADDV R+S+++ +RV  DPLASIGM    KP  +G+             S +A                      DPFARRR+RP+SYW++G        AEG+++   +  + A   A    GEY+CE CES +TSFDI+GGAA  +RK+ETFG KDAPEL+LRV+CHACG  W+EER
Sbjct:   14 ELLCSRCYKRESCVQCCGTRYCLRHFHTSNHSSDHPQKAIVMNRRALDDQLPAFREMWREAFQSVADDVGRLSRDVSKRVEDDPLASIGMA--LKPVRNGKHPXXXXXXXXHQSSGSASSXXXXXXXXXXXXXXXXXXXVDPFARRRTRPKSYWAVGHELDAPEEAEGSAA---DERAAAIAAAAPRAGEYQCESCESDNTSFDIIGGAAVGTRKAETFGKKDAPELILRVLCHACGNNWLEER 252
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BLAST of mRNA_H-paniculata_contig2751.7531.1 vs. uniprot
Match: A0A836CMQ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMQ6_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.610e-34
Identity = 84/253 (33.20%), Postives = 119/253 (47.04%), Query Frame = 1 
Query:    7 MCSRCYKRESCVRCCGIRFCLRHFHTSNHSSEHPHKAIVVNQEALDKQLPAFQEMWREAFQSVADDVERISQEIGERVAQDPLASIGM-PRPAKPRSSGRSGKGSGDANGRSESSTAKRLRREEEKGEPSVKAAAL---------------------ADPFARRRSRPQSYWSIGAEGTSSLSEETNSMAPPPATAHMGEYKCELCESMDTSFDIVGGAAGNSRKSETFGNKDAPELVLRVVCHACGYTWMEE 699
            MCSRC  R + + CC    CLRHFHTS H+S HP KA V+NQEA D Q   F   W+  F+SV  D+E+I++++ E V+ DPL +IGM P   K  S+G               +  +R+ R+                                   D   RR+    +YW++G   T  L                  Y+C++C S +T F  +GG  G +RK ET+GNK+A  L++R+ C  CG +W EE
Sbjct:   18 MCSRCTTRPAAISCCSTALCLRHFHTSEHASAHPSKATVINQEAADLQHDDFARQWKATFESVQADIEQITEQM-EAVSNDPLGAIGMMPTLNKAPSAG-------------VLAAEQRMSRKPSSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDVSKRRKPSRTTYWAVGDPSTGVL--------------RGSRYRCDVCHSDNTIFSSIGGDGGQTRKGETWGNKEAAALMVRIDCRNCGRSWTEE 242
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BLAST of mRNA_H-paniculata_contig2751.7531.1 vs. uniprot
Match: B5Y3Z5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3Z5_PHATC)

HSP 1 Score: 62.0 bits (149), Expect = 9.830e-8
Identity = 69/248 (27.82%), Postives = 103/248 (41.53%), Query Frame = 1 
Query:   61 FCLRHFHTSNHSSEHPHKAIVVNQEALDKQLPAFQEMWREAFQSVADDVERISQEIGERVAQDPLA--------SIGMPRPAKPRSSGRSGKG-------------SGDANGRSESSTAKRLRREEEKGEPSVKAAALADPFARRRSRPQSYWSI----------GAEGTSSLSEETNSMAPPPATAHMGEYKCELCESMDTSFDIVGGAAGNSR---KSETFGNKD-APELVLRVVCHACGYTWMEE 699
            +CL H+++S+          V++QE L++QLPA QE++ EA+ S+  ++   S     R   DPLA        S   P  A P+    S  G             +     R +S    R+ +  E   P+ K   ++D   RR S  +S W++           A+G   +S E    A  P T  + +  C  C S     +IVG     ++   K E +GNKD   E V R  C  C  TW EE
Sbjct:   58 YCLLHYYSSSAIRTDVKYVTVLDQEELNRQLPAVQELFSEAYVSLQQELSEQSARAFSRHQHDPLAILHDLNKKSRKAPPAATPKKVDYSAGGFIREVPLPERLLHTQQQQARLQSHLISRMEKASESARPTSK---ISDLSRRRPSSRKSIWNVVMDQPTKKQNSAKGE--ISTERKKYAIHPDTTIVDDTTCSACGSHQV--EIVGSNTSRNQDATKGEIWGNKDRGDETVTRYRCLNCARTWNEE 298
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2751.7531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JTC2_9PHAE2.300e-8054.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CMQ6_9STRA1.610e-3433.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B5Y3Z5_PHATC9.830e-827.82Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2751contigH-paniculata_contig2751:3986..6591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue2.9e-08
Seed eggNOG ortholog2850.Phatr46851
Hectar predicted targeting categoryother localisation
EggNOG OGs2EPY0@1,2ST1V@2759,2XGZ2@2836
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_001820.1
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons4
Model size705
Cds size699
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2751.7531.1prot_H-paniculata_contig2751.7531.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2751 3986..6585 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929831.5275793-CDS-H-paniculata_contig2751:3985..41981622929831.5275793-CDS-H-paniculata_contig2751:3985..4198Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2751 3986..4198 -
1691481030.3143263-CDS-H-paniculata_contig2751:3985..41981691481030.3143263-CDS-H-paniculata_contig2751:3985..4198Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2751 3986..4198 -
1622929831.545062-CDS-H-paniculata_contig2751:5124..54481622929831.545062-CDS-H-paniculata_contig2751:5124..5448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2751 5125..5448 -
1691481030.3282304-CDS-H-paniculata_contig2751:5124..54481691481030.3282304-CDS-H-paniculata_contig2751:5124..5448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2751 5125..5448 -
1622929831.5648797-CDS-H-paniculata_contig2751:5781..58771622929831.5648797-CDS-H-paniculata_contig2751:5781..5877Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2751 5782..5877 -
1691481030.3441432-CDS-H-paniculata_contig2751:5781..58771691481030.3441432-CDS-H-paniculata_contig2751:5781..5877Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2751 5782..5877 -
1622929831.5798187-CDS-H-paniculata_contig2751:6519..65851622929831.5798187-CDS-H-paniculata_contig2751:6519..6585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2751 6520..6585 -
1691481030.3567429-CDS-H-paniculata_contig2751:6519..65851691481030.3567429-CDS-H-paniculata_contig2751:6519..6585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2751 6520..6585 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929831.5942032-UTR-H-paniculata_contig2751:6585..65911622929831.5942032-UTR-H-paniculata_contig2751:6585..6591Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2751 6586..6591 -
1691481030.3662062-UTR-H-paniculata_contig2751:6585..65911691481030.3662062-UTR-H-paniculata_contig2751:6585..6591Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2751 6586..6591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2751.7531.1

>prot_H-paniculata_contig2751.7531.1 ID=prot_H-paniculata_contig2751.7531.1|Name=mRNA_H-paniculata_contig2751.7531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=233bp
MCSRCYKRESCVRCCGIRFCLRHFHTSNHSSEHPHKAIVVNQEALDKQLP
AFQEMWREAFQSVADDVERISQEIGERVAQDPLASIGMPRPAKPRSSGRS
GKGSGDANGRSESSTAKRLRREEEKGEPSVKAAALADPFARRRSRPQSYW
SIGAEGTSSLSEETNSMAPPPATAHMGEYKCELCESMDTSFDIVGGAAGN
SRKSETFGNKDAPELVLRVVCHACGYTWMEER*
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mRNA from alignment at H-paniculata_contig2751:3986..6591-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2751.7531.1 ID=mRNA_H-paniculata_contig2751.7531.1|Name=mRNA_H-paniculata_contig2751.7531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2606bp|location=Sequence derived from alignment at H-paniculata_contig2751:3986..6591- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCTTATGTGCAGTCGATGCTACAAGCGGGAGTCGTGCGTGCGGTGCTG
CGGTATTCGCTTCTGCTTGAGGGTGAGGGGGGTGAGGGCTTGCTGTACAG
AGTGTAACTGACTACCATTATTGTAGAGCTCTATTGTTCGATGGTACAGT
CAGTGCCATCGTGCGATCGGGTAGTGCACGTTATAGTCAAGATAGATAAC
GATAATGTAGTGCTCTCTTATTGTTGTTGTTGTTCGTGTTGGTGCTGATG
GTGGCGGTGACAGTAGGGTAGGAGTTCCGAATTCCTCATTCAGGTGTGTG
CAATAGCTGAAAGGTAAAACGTATGAGGACAGGCTTTGTCATGAAGTCTA
CTGACTCGGTTTTTATTGCTTGTTTTAACGAATCAGTCCCGCCTAGTTGT
GTTGGTCGTGTTCGAAAGACAGCTAGCCTCGTCGGGATGTAACCCTGCTA
CGACGTTGTGCTGGCTATTCGGTAGGGCGATATGTGTGTTTCCATATTTA
CATCTTCGGACACGAGAAATTTGAGGTTGTGTTTCCACCATCGGCAAGAC
ACGTGTGACAGACGCGGGAAATATTGCGGAGTATTTGCGAATTGACATCT
GTTTTCTGGTTGAAAATTGAAAATTCCCAACCTCATTGCAGGTTCCTCAA
GGCTCATGAATGATGCGTTTCTCCCCTCTGCACTCGTTGGTGGGTGTCGG
TTCTCTATGTGTAGCATTTCCACACCAGCAATCACTCTAGCGAGCACCCG
CATAAGGCGATCGTGGTGAACCAGGAAGCTCTGGACAAACAATTGCCAGC
TTTCCAAGAGGTGAGTAAGCCGACAAAATAGAGGCAAATAAATGGTGCAC
GGACAGCAGCCACAGTAGAGCGGCGCGAAGATTGAAGCGCAGCACAGCAT
ATTTTCGTCATGCAAATGCGGTTCAAATAATTGTGGGAGGTGCGAAGCTT
CCACATTTTCGTGGTACAGAAAGTGATCGACTGTCGGTGCCAGAAGAGTC
ATTTTCACAGCCTTCGAGTCGGGATTCAGCCTCATAATACACTGACTTGA
ACGATTGCCACGTGGCGTGACCGTCAATGTTATTCTGTACATCCGAGAGA
GTGACACCACAAGCCTGGCCAATGATAATGCACTCATGTCCAGATGTGGC
GAGAAGCCTTCCAGTCGGTAGCAGACGACGTCGAGCGGATATCCCAAGAA
ATTGGAGAACGTGTCGCTCAAGATCCCCTGGCCTCAATCGGTATGCCCAG
GCCTGCGAAACCACGATCATCTGGACGCTCTGGGAAAGGCTCGGGAGATG
CTAATGGACGCAGCGAGTCGTCGACGGCAAAGCGATTGCGACGGGAGGAG
GAGAAGGGCGAGCCGAGTGTCAAAGCTGCAGCATTGGCTGATCCGTTTGC
CCGGCGACGAAGTCGCCCTCAAAGTTATTGGTCGATTGGTGCTGAAGGAA
CCAGCTCATTGTCGGAGGTATAAAGTGAAAGTGTATATACACAGCTCTAT
ATATTGTAGTGTGGATGTTCATGTAATCGTTCATTTTGCGGTATTGCAAA
TATTGAAGTTGCATAGGGCGGTGCAAGGCGGTGTGAAGTTCAAAAATGTA
TTGAAATAACATGAACAACACTAGAGATATCCCGTTAACGTTTGATGAAT
CAAATTGCTAGTTATCGTATATCCGGCCGGTTAGTCCAAAATGATTTAAA
ACGAGTCATTGCCTATTCTACTTGTAGTCAATTAGGGTATATGATTTTTG
CGTGTGGACTTTCTAATTATTTAGTAGCAGCATTTTATCTAGCAAATCAT
TCTTTTTTTTAAGTTCTCTTTTTTTTAGGTGCTGGATCCGTTATTCGTGA
TATTGGTGATGAGCAAGATTTGAGAAAAATGGGGGGTTCACCCCTTCTTT
TACCTTTTACTTATGTTATGATGTTATTAGGTTCTTTAGCTTTCGGTATT
AATGAAGTAGTACAACACGCTGAACTCTGAATTCTGAATTCTTTTACTCC
GGAGTATTTGTGCATACAACAGTTCGCAGTCGAGGTACTGTGGTTGAAGA
CTGTTTTCTCATATGGGGTAACACGTTTGTTTGGTCATTCAAGTTATATT
GGTAGAAATAGACGGAAGGTATCCAGTCTTTAGTTCTTGCCTAGCGTTTC
GCCGCACAGAGTGTTCAAAGTTCTTGGAGGAATACACTGCGCGGCATACC
TATTATTGCAGCATGGATGATGACTTTCCGCCGTATGTACAAGGAATTCT
ATGGGCTGTTTCCACCTCCGAGTCTCCCAAGCTCCTCAATATATGTTTCC
CGCCAGATCACGTCCTTTTACCTCCTTCCACAACCAGATATGACTGACAC
CTTTCACGTTTCCGTCATTTCTCACGCAATACTGTAGGAAAAGGAAACGA
ATTCGATGGCACCACCTCCAGCAACCGCGCACATGGGCGAGTACAAGTGC
GAATTGTGCGAGAGCATGGACACCAGTTTTGACATTGTTGGCGGGGCAGC
TGGGAACAGTCGAAAGTCTGAAACGTTCGGGAACAAGGATGCACCAGAAC
TCGTGTTGAGGGTGGTGTGTCATGCGTGTGGGTACACATGGATGGAAGAG
CGATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2751:3986..6591-

>mRNA_H-paniculata_contig2751.7531.1 ID=mRNA_H-paniculata_contig2751.7531.1|Name=mRNA_H-paniculata_contig2751.7531.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at H-paniculata_contig2751:3986..6591- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCAGTCGATGCTACAAGCGGGAGTCGTGCGTGCGGTGCTGCGGTAT
TCGCTTCTGCTTGAGGATGTGCAGTCGATGCTACAAGCGGGAGTCGTGCG
TGCGGTGCTGCGGTATTCGCTTCTGCTTGAGGCATTTCCACACCAGCAAT
CACTCTAGCGAGCACCCGCATAAGGCGATCGTGGTGAACCAGGAAGCTCT
GGACAAACAATTGCCAGCTTTCCAAGAGCATTTCCACACCAGCAATCACT
CTAGCGAGCACCCGCATAAGGCGATCGTGGTGAACCAGGAAGCTCTGGAC
AAACAATTGCCAGCTTTCCAAGAGATGTGGCGAGAAGCCTTCCAGTCGGT
AGCAGACGACGTCGAGCGGATATCCCAAGAAATTGGAGAACGTGTCGCTC
AAGATCCCCTGGCCTCAATCGGTATGCCCAGGCCTGCGAAACCACGATCA
TCTGGACGCTCTGGGAAAGGCTCGGGAGATGCTAATGGACGCAGCGAGTC
GTCGACGGCAAAGCGATTGCGACGGGAGGAGGAGAAGGGCGAGCCGAGTG
TCAAAGCTGCAGCATTGGCTGATCCGTTTGCCCGGCGACGAAGTCGCCCT
CAAAGTTATTGGTCGATTGGTGCTGAAGGAACCAGCTCATTGTCGGAGAT
GTGGCGAGAAGCCTTCCAGTCGGTAGCAGACGACGTCGAGCGGATATCCC
AAGAAATTGGAGAACGTGTCGCTCAAGATCCCCTGGCCTCAATCGGTATG
CCCAGGCCTGCGAAACCACGATCATCTGGACGCTCTGGGAAAGGCTCGGG
AGATGCTAATGGACGCAGCGAGTCGTCGACGGCAAAGCGATTGCGACGGG
AGGAGGAGAAGGGCGAGCCGAGTGTCAAAGCTGCAGCATTGGCTGATCCG
TTTGCCCGGCGACGAAGTCGCCCTCAAAGTTATTGGTCGATTGGTGCTGA
AGGAACCAGCTCATTGTCGGAGGAAACGAATTCGATGGCACCACCTCCAG
CAACCGCGCACATGGGCGAGTACAAGTGCGAATTGTGCGAGAGCATGGAC
ACCAGTTTTGACATTGTTGGCGGGGCAGCTGGGAACAGTCGAAAGTCTGA
AACGTTCGGGAACAAGGATGCACCAGAACTCGTGTTGAGGGTGGTGTGTC
ATGCGTGTGGGTACACATGGATGGAAGAGCGATGAGAAACGAATTCGATG
GCACCACCTCCAGCAACCGCGCACATGGGCGAGTACAAGTGCGAATTGTG
CGAGAGCATGGACACCAGTTTTGACATTGTTGGCGGGGCAGCTGGGAACA
GTCGAAAGTCTGAAACGTTCGGGAACAAGGATGCACCAGAACTCGTGTTG
AGGGTGGTGTGTCATGCGTGTGGGTACACATGGATGGAAGAGCGATGA
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