mRNA_H-paniculata_contig2750.7528.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2750.7528.1 vs. uniprot
Match: D8LSS5_ECTSI (Neural cell expressed, developmentally down-regulated 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSS5_ECTSI) HSP 1 Score: 306 bits (783), Expect = 3.750e-87 Identity = 296/800 (37.00%), Postives = 381/800 (47.62%), Query Frame = 2
Query: 8 IYGLAFSARSRKLAAGGEAGVVEVWNLKNSNTRVTFRGHRGPVSCVSFFEKDTSVAAGDKDGRVLLHKLDAPPEEEKSPISLPSSEGHEAVTALAMPLTLGSATSTMLGASHSDGSVRLWDLGRGSCSRELKKQHRGEASGIAFHPQNPSLVATVGLDGLVHCVDIRVGDSA-GGSGNG-LRSTETGVPLTCVSFHHEGLILAVGASDGTVRLVDLRSARQI---DRPQNAFAGPSPPKRGVRDVRFQFVNPRHNHNTSMVSTSNSSTPSFSSNSSFGDRKNASGGXXXXRAERAAGGTSSAPRTN-GARGXXXXXXXXXXXXXSSSGGVSFSDSRKMRRKKPGSMNSNSNGDIQHPSSXXXXXXXXXXXXXXXXXXXXXXAHAPVQHPPDPLTA------APS------STTPSRKHWSXXXXXXXXXXXXNGA-LPSPPKYASAMLPATASISLDNRFREKNMTANNNYINSSYVHLLSRGGGGAGEGGIDGRPGDRAAIGGXXXXXXXGPEFSTSAGSGYSDEDEVERRGEDEGENNDRQSTKRAGTRHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGREKQSGRDTAGFSSARDNN---DSNNAVLRRRAMKGSASVSVGFQALSGSMSVSASESQQRRGAALEAHGIEDAGEVPSRQAPLGAA-GAPTTAGSGSSAGVQQVVALDRSVLEQILSSHVSGLKEELRQEIRNLHMDVLRQFHSLQDEQAAAMSGFEERLGGLVAENQALRAENDRLRRVY 2338
I G+ FS++SRKLAAGG+AGVVEVW+LK +N+RVT RGHRGPV+CVSFF++D+ VAAGD+ G+V+LH++ P ++++ +LP + G+ +VT L+M +A MLG S++DG+VRLWD G +C RE++ QHRG A+GI FHPQNP+LVAT G DG+V C D+RVG+ GG G+G L+S +T PLTCVSFHHEGL LA GASDGTVRLVDLR+AR+ RP G T+ TP+ ++ + G + AA + P + G+ G G + + +S NGD S+ XXXXXXXXXXX H P+ A AP +T P XXXXXXXX NGA P Y + A++ + A + NSS ++ G D R R GG G +T G + + G G DR + G G SGR T +R + S + R+ AM + G R GAA+ + GE R+ P G GA TAG G QVV+LDRSVLEQ+LS+HVSGL+EELRQE+RNLH+D+LRQFHSLQDEQ+ A+SGFEERLGGLVAENQALRAENDRLRRVY
Sbjct: 80 IRGITFSSKSRKLAAGGDAGVVEVWDLKRNNSRVTMRGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASATLPPAGGYSSVTGLSM--ASAAAGPAMLGVSYADGTVRLWDTGSRACVREMQTQHRGAAAGIVFHPQNPNLVATAGHDGVVRCTDVRVGERKDGGGGDGVLKSIQTDAPLTCVSFHHEGLALAAGASDGTVRLVDLRTAREAINSARPTRVSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT---TPAVATEVA---------GVGNPAGKAAAAVAEATPYFSVGSHG----------------GPIQXXXXXXXXXAAENTSSSKGNGD----SAPGXXXXXXXXXXXAALASSSRQRHQDPYGVPNEAPAGVGGGGAPRYGNQSVATPPXXXXXXXXXXXXXXRGSSNGAPAPRAQDYVDSAAAVAAAV----------VPAGRPWPNSSSPERVAAG--------FDRR---RRENGGSLGVAGGG--MTTGEGDEWDVQPPTTAYGNKSGGEYDRATVLSTPDSRGARVDA-----------------------------------------------------------GGGGGSGRGTRMNGDSRAGSGVFSSPSGAPRKPAMHSGGPSTAGGVG--------------RTGAAV----VAGDGEAIVRREPRGEEEGAAPTAGGG------QVVSLDRSVLEQVLSNHVSGLREELRQELRNLHVDMLRQFHSLQDEQSTALSGFEERLGGLVAENQALRAENDRLRRVY 739
BLAST of mRNA_H-paniculata_contig2750.7528.1 vs. uniprot
Match: D2V7A1_NAEGR (WD40 repeat domain-containing protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V7A1_NAEGR) HSP 1 Score: 103 bits (256), Expect = 8.190e-19 Identity = 62/217 (28.57%), Postives = 108/217 (49.77%), Query Frame = 2
Query: 8 IYGLAFSARSRKLAAGGEAGVVEVWNLKNSNTRVTFRGHRGPVSCVSFFEKDTSVAAGDKDGRVLLHKLDAPPEEEKSPISLPSSEGHEAVTALAMPLTLGSATSTMLGASHSDGSVRLWDLGRGSCSRELKKQHRGEASGIAFHPQNPSLVATVGLDGLVHCVDIRVGDSAGGSGNGLRSTETGVPLTCVSFHHEGLILAVGASDGTVRLVDLRSA 658
+ ++ S KL +GG + +V++W+LK TF+GH+ ++CV+F E D VA+GD G +L+H + + + +S S +++ L T+L ++ DGSV +WD G QH+ + F QN +L+A+ GLD ++ DI+ + + P++ S+ G I+AVG S+G+V L DL+ +
Sbjct: 121 VQSISIGESSLKLCSGGSSCIVKIWDLKKKEVINTFKGHKEIITCVTFSEGDQHVASGDASGTILIHNIVS------NTLSCTLSNTQQSIKFL----EYSPFYKTLLASASDDGSVTIWDTISGKPYCSFPNQHQAPCVAVHFSKQNVALLASAGLDKNIYFYDIKEKKI-------VENIRVSQPISSFSYLDNGSIMAVGTSNGSVFLYDLKKS 320
BLAST of mRNA_H-paniculata_contig2750.7528.1 vs. uniprot
Match: A0A8J5XZD7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XZD7_DIALT) HSP 1 Score: 95.9 bits (237), Expect = 1.700e-16 Identity = 84/264 (31.82%), Postives = 120/264 (45.45%), Query Frame = 2
Query: 17 LAFSARSRKLAAGGEAGVVEVWNLKNSNTRVTFRGHRGPVSCVSFFEKDTS---------VAAGDKDGRVLLHKL-DAPPEEEKSPISLPSSEGHEAVTALAMPLTLGSATSTMLGASHSDGSVRLWDL-------GRGSCSRELKKQHRGEASGIAFHPQNPSLVATVGLDGLVHCVDI--RVGDSAGGSGNGLRSTETGVPLTCVSFHHEGLILAVGASDGTVRLVDLRSARQIDRPQNAFAGPSPPKRGVRDVRFQFVNPR 751
LAFS+RSR L AGG+ GVV VW+L S H PVSC+ + D+ + AG G + H L D P S + L + A TA+ +A L ++ S G+VRLWD+ G + +H +G+A+ N L+A+VG DG + D RV ++ G L CVSF +G+ +AVG GT+ + DLR + R A+A + P V D+ FQ+V R
Sbjct: 81 LAFSSRSRFLGAGGDDGVVRVWDLSQSGRPRRVHAHTSPVSCLCWAPPDSDDESARGFEMLVAGSSSGEITTHALADGRPPACASRLVLSARGQPLACTAVQFSPLRRAA----LASADSSGAVRLWDVAHARGGGGDAPVAAHQFGEHELACTGLAWSSVNHLLLASVGADGKLAFYDTAQRVP---------VKRVALGCALGCVSFLQDGVTIAVGGEAGTIHVFDLRMSLAPMR--TAYASTAHP---VTDLAFQYVTSR 326
BLAST of mRNA_H-paniculata_contig2750.7528.1 vs. uniprot
Match: A0A6G0W3M7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W3M7_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 5.090e-14 Identity = 69/226 (30.53%), Postives = 98/226 (43.36%), Query Frame = 2
Query: 17 LAFSARSRKLAAGGEAGVVEVWNLKNSNTRVTFRGHRGPVSCVSFF-EKDTSVAAGDKDGRVLLHKLDAPPEEEKSPISLPSSEGHEAVTALAMPLTLGSATSTM-----------LGASHSDGSVRLWDLGRGSCSRELKKQHRGEASGIAFHPQNPSLVATVGLDGLVHCVDIRVGDSAGGSGNGLRSTETGVPLTCVSFHHEGLILAVGASDGTVRLVDLRSA 658
L S+ SR L +GG VV +W+LK N + F V VSF + D +AAG + G + L+ H + + L SA ++ LG ++ G++RLWDL S L + H A+ + F P + LVAT GLD V D+ G + E+ P+T +S H G +LA G S G V L DLR+A
Sbjct: 86 LHLSSGSRYLISGGVDCVVRIWDLKRQNLKYAFAPCNSNVHSVSFAGQSDEYIAAGCESGDLYLYHAQ-----------------HGSAAGVCQELEDTSAIHSVVSSPHPFLRNKLGCVYASGALRLWDLATMSLQTSLSRLHWAPATRVVFSPIHKHLVATSGLDKRVVFTDV-------GLSKEINCLESPHPITAMSMHPHGQVLATGTSTGHVLLYDLRNA 287
BLAST of mRNA_H-paniculata_contig2750.7528.1 vs. uniprot
Match: A0A7J7JMT3_BUGNE (NEDD1 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JMT3_BUGNE) HSP 1 Score: 87.4 bits (215), Expect = 6.090e-14 Identity = 55/221 (24.89%), Postives = 104/221 (47.06%), Query Frame = 2
Query: 17 LAFSARSRKLAAGGEAGVVEVWNLKNSNTRVTFRGHRGPVSCVSFFEKDTSVAAGDKDGRVLLHKLDAPPEEEKSPISLPSSEGHEAVTALAMPLTLGSATS----TMLGASHSDGSVRLWDLGRGSCSRELKKQHRGEASGIAFHPQNPSLVATVGLDGLVHCVDIRVGDSAGGSGNGLRSTETGVPLTCVSFHHEGLILAVGASDGTVRLVDLRSARQI 667
L++S + +A G V++++LK T+ T++GH+ P++CV++ DT++A+ K+G V+LH + +T + + G S +M+ + D S+ LWD G + + H+ A+ + F P N L+ + GLD + D+ + + +R+ + PL+ +S + G +A G G + L DLR +I
Sbjct: 78 LSWSNNGKHIALGCTDHEVKIFDLKTQTTKKTYKGHKSPLTCVTYNYNDTAIASSSKNGEVVLHNAI-------------TDLTTRLITTIKLQAIQGLQYSYHHHSMIASVSDDASLVLWDTGARRSIHQFTRSHKAPATDLMFSPANDKLLLSCGLDKNIVLYDVL-------NKSIVRTLQVDTPLSTISMNSNGYQIATGTIKGQILLHDLRVGSEI 278
BLAST of mRNA_H-paniculata_contig2750.7528.1 vs. uniprot
Match: A0A2V0P192_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P192_9CHLO) HSP 1 Score: 82.0 bits (201), Expect = 3.620e-12 Identity = 86/307 (28.01%), Postives = 133/307 (43.32%), Query Frame = 2
Query: 8 IYGLAFSARSRKLAAGGEAGVVEVWNLKNS---NTRVTFRGHRGPVSCVSFFEKDTSVAAGDKDGRVLLHKLDAPPEEEKSPISLPSSEGHEAVTALAMPLTLGSATSTMLGASHSDGSVRLWDLGRGSCSRELKKQHRGEASGIAFHPQNPSLVATVGLDGLVHCVDIRVGDSAGGSGNGLRSTETGVPLTCVSFHHEGLILAVGASDGTVRLVDLRSARQIDRPQNAFAGPSPPKRG-VRDVRFQFVNPRHNHNTSMVSTSNSSTPSFSSNSSFGDRKNASGGXXXXRAERAAGGTSSAPRTNGA 916
I + FS S+KL G + + +L+ N +T H+G V ++ D +A+ G+VLLH L K+ + L S G + L L A+ DGSV +W + + +EL++ HRG A+G+ F P NPSL+ + G D + +D R L + + LTC+ + +A G + G V + DLR RP A S ++G VR VR+Q + + + +TS S+ P+ S+ G R +G A GG A R GA
Sbjct: 87 IAAIKFSGDSKKLVVGCANRTLHIRDLRTQGAGNKYIT--DHKGAVCALAISPDDGIIASASSVGQVLLHDL-------KAGVKLGSLPGDGPIRGA---LHFCPLDGDQLAAASDDGSVCVWSVRARTPRQELRRLHRGGATGVRFAPDNPSLLYSCGADMRLVVIDTRQPSGPQQEALTLHAPQA---LTCMDVRFDARTIAAGTAGGGVLVFDLR------RPGPASGVYSFGEQGPVRCVRWQNAPHSSSKHRAGQATSVSAAPTVSAGGQLGGRPALNGAAAPAAALGGRGGMIGAGRAAGA 372
BLAST of mRNA_H-paniculata_contig2750.7528.1 vs. uniprot
Match: A0A5C7GYP0_9ROSI (Uncharacterized protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7GYP0_9ROSI) HSP 1 Score: 82.0 bits (201), Expect = 4.100e-12 Identity = 59/220 (26.82%), Postives = 97/220 (44.09%), Query Frame = 2
Query: 8 IYGLAFSAR-SRKLAAGGEAGVVEVWNLKNSNTRVTFRGHRGPVSCVSFFEKDTSVAAGDKDGRVLLHKLDAPPEEEKSPISLPSSEGHEAVTALAMPLTLGSATSTMLGASHSDGSVRLWDLGRGSCSRELKKQHRGEASGIAFHPQNPSLVATVGLDGLVHCVDIRVGDSAGGSGNGLRSTETGVPLTCVSFHHEGLILAVGASDGTVRLVDLRSARQ 664
I ++FS + SR + +GG VV +W+L+ RGH ++ + KD +A+ G ++LH L + ++E + + L + +L + DG+V LWD S KQH +GI+F P N ++A+VGLD ++ D GS P + ++F +G +LA G S+G V D+R Q
Sbjct: 128 ILAISFSNKGSRYICSGGSGQVVRIWDLQRKRCIKWLRGHTNSITGAMYNCKDEHLASISLSGDLILHNLAS---------GARATELKDPNEQVLRALDYSRISRHLLVTAGDDGTVHLWDTTGRSPKVSWLKQHSAPTAGISFSPSNDKIIASVGLDKKLYTFD-------SGSRRSSSCISYEAPFSSLAFRDDGWVLAAGTSNGRVVFYDVRGKPQ 331
BLAST of mRNA_H-paniculata_contig2750.7528.1 vs. uniprot
Match: A0A485KEU9_9STRA (Aste57867_3285 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KEU9_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 4.440e-12 Identity = 60/209 (28.71%), Postives = 94/209 (44.98%), Query Frame = 2
Query: 8 IYGLAFSARSRKLAAGGEAGVVEVWNLKNSNTRVTFRGHRGPVSCVSFF-EKDTSVAAGDKDGRVLLHKLDAPPEEEKSPISLPSSEGHEAVTALAMPLTLGSATSTMLGASHSDGSVRLWDLGRGSCSRELKKQHRGEASGIAFHPQNPSLVATVGLDGLVHCVDIRVGDSAGGSGNGLRSTETGVPLTCVSFHHEGLILAVGASDGT 631
+ L S+ SR L +GG +V VW+LK + + F V V+F + D + AG G + L+ ++ + + + LA+ + LG HS G++RLWD+ S + H A+ IAF P + +LVAT GLD + D+ +G + E+ P+T +S H G +LA G S GT
Sbjct: 82 VNSLHLSSGSRYLISGGMDRIVRVWDLKRQHLKHAFAECNAVVRSVAFTGQTDEYIVAGCDSGDIYLYHA------QQGTAAGLCRDRDDPSAVLAVSASPHPFVRNTLGVVHSSGALRLWDVPTASLVAAFPRLHWAPATCIAFSPVHKNLVATAGLDKRIVFCDLSLGQE-------MNCLESPHPITSLSMHANGSLLATGTSTGT 277
BLAST of mRNA_H-paniculata_contig2750.7528.1 vs. uniprot
Match: W1PLP7_AMBTC (Uncharacterized protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1PLP7_AMBTC) HSP 1 Score: 80.1 bits (196), Expect = 1.560e-11 Identity = 60/220 (27.27%), Postives = 96/220 (43.64%), Query Frame = 2
Query: 8 IYGLAFSAR-SRKLAAGGEAGVVEVWNLKNSNTRVTFRGHRGPVSCVSFFEKDTSVAAGDKDGRVLLHKLDAPPEEEKSPISLPSSEGHEAVTALAMPLTLGSATSTMLGASHSDGSVRLWDLGRGSCSRELKKQHRGEASGIAFHPQNPSLVATVGLDGLVHCVDIRVGDSAGGSGNGLRSTETGVPLTCVSFHHEGLILAVGASDGTVRLVDLRSARQ 664
I ++FS + SR L +GG VV +W+L+ +GH ++ V + KD +A+ G ++LH L + ++E + + L + +L + DGSV LWD S KQH +G+ F PQN ++A+VGLD ++ D GS P + ++F E +LA G + G V D+R Q
Sbjct: 90 ILAISFSNKGSRYLCSGGTGQVVRIWDLQRKRCIKWLKGHTDTITGVMYNCKDEHLASISLKGDLILHNLAS---------GAQAAELKDPNQQVLRVLDYSRTSRHVLVTAGDDGSVHLWDTTGRSPKISWLKQHSAPIAGVCFSPQNDKIIASVGLDKKLYTYDT-------GSKRATYCIPYEAPFSSLAFKEEDWLLAAGTNSGRVVFYDVRGKPQ 293
BLAST of mRNA_H-paniculata_contig2750.7528.1 vs. uniprot
Match: A0A0D2MXY0_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MXY0_9CHLO) HSP 1 Score: 79.0 bits (193), Expect = 3.360e-11 Identity = 57/220 (25.91%), Postives = 97/220 (44.09%), Query Frame = 2
Query: 8 IYGLAFSARSRKLAAGGEAGVVEVWNLKNSNT-RVTFRGHRGPVSCVSFFEKDTSVAAGDKDGRVLLHKLDAPPEEEKSPISLPSSEGHEAVTALAMPLTLGSATSTMLGASHSDGSVRLWDLGRGSCSRELKKQHRGEASGIAFHPQNPSLVATVGLDGLVHCVDIRVGDSAGGSGNGLRSTETGVPLTCVSFHHEGLILAVGASDGTVRLVDLRSARQ 664
+ + FSA S++LA G + + +L++ H+ PV+ ++ D+ + + G+V+LH K+ L S A + A+ A L + DG V +W + + EL++ HRG A+G+ F P +P ++ + G DG + +D R + + PLTC+ + LAVG S G V + DLR Q
Sbjct: 88 VTAMRFSADSKRLAIGCTNRALHIRDLRSQGAGNKCIIDHKAPVAALAISPDDSLLVSSSAGGQVMLHDF-------KTGAKLASLAHDGAARSAALQFCASDAD--RLATASDDGGVAVWSVAARAARHELRRLHRGGATGVRFAPDSPHVLYSCGKDGRLLVLDTRQPTQ---QQQETLAAQASQPLTCLDARFDARSLAVGTSGGAVLVFDLRRPGQ 295 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2750.7528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2750.7528.1 >prot_H-paniculata_contig2750.7528.1 ID=prot_H-paniculata_contig2750.7528.1|Name=mRNA_H-paniculata_contig2750.7528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=683bp MPLTLGSATSTMLGASHSDGSVRLWDLGRGSCSRELKKQHRGEASGIAFHback to top mRNA from alignment at H-paniculata_contig2750:8735..19915- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2750.7528.1 ID=mRNA_H-paniculata_contig2750.7528.1|Name=mRNA_H-paniculata_contig2750.7528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11181bp|location=Sequence derived from alignment at H-paniculata_contig2750:8735..19915- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2750:8735..19915- >mRNA_H-paniculata_contig2750.7528.1 ID=mRNA_H-paniculata_contig2750.7528.1|Name=mRNA_H-paniculata_contig2750.7528.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4098bp|location=Sequence derived from alignment at H-paniculata_contig2750:8735..19915- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |