mRNA_H-paniculata_contig275.7524.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig275.7524.1
Unique Name	mRNA_H-paniculata_contig275.7524.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig275.7524.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 6.550e-26
Identity = 56/110 (50.91%), Postives = 70/110 (63.64%), Query Frame = 1

Query:    1 VDDIGIWTRNWQELMQSLRIVLDRLKARSIYVAVDKVPLFRREMRWCGKVYSVATASHDPERMQGLATMRWPETVGELNPFLQAVNLMRTGLPEFA-VVKPLWDMLDEFL 327
            VDD+  W  +  +L+ +L ++LDRL+   +YVA  K   F   + WCGKVYS     HDPER+ GLATMR PET GEL  FLQAVN +RT LP  A VV PL   L++ L
Sbjct:  910 VDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAHKCTFFETSITWCGKVYSEGQVEHDPERLSGLATMRRPETAGELMQFLQAVNWLRTSLPRMAEVVWPLRVFLEQHL 1019

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BLAST of mRNA_H-paniculata_contig275.7524.1 vs. uniprot
Match: A0A2P4Y094_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y094_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.030e-14
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = 1

Query:    1 VDDIGIWTRNWQELMQSLRIVLDRLKARSIYVAVDKVPLFRREMRWCGKVYSVATASHDPERMQGLATMRWPETVGELNPFLQAVNLMRTGLPEF-AVVKPLWDMLDEFLK 330
            +DDI  +  +  EL+Q L  VL R +A  + +   K   F  E++WCGK+ S A   H P+R+QGL  M+ P+T G+L  FL AVN MR  +PE+  +   L  +L+E +K
Sbjct:  784 LDDILGYAESEDELLQLLDQVLARCEAYGLKLHAKKCDFFEIEVKWCGKMVSAAGVCHCPDRVQGLVEMQPPQTAGDLQQFLCAVNWMRQSIPEYNRLTAGLHAVLEEAMK 894

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BLAST of mRNA_H-paniculata_contig275.7524.1 vs. uniprot
Match: A0A6A3VHD7_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3VHD7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.710e-14
Identity = 43/112 (38.39%), Postives = 65/112 (58.04%), Query Frame = 1

Query:    1 VDDIGIWTRNWQELMQSLRIVLDRLKARSIYVAVDKVPLFRREMRWCGKVYSVATASHDPERMQGLATMRWPETVGELNPFLQAVNLMRTGLPEF-AVVKPLWDMLDEFLKN 333
            +DDI  +  +  EL+Q L  VL R +A  + +   K   F  E++WCGK+ S A   H P+R QGL  M+ P+T G+L  FL A+N MR  +PE+  +   L+ +L+E +K 
Sbjct:  102 LDDILGYAESEDELLQLLDQVLVRCEAYGLKLHAKKCEFFEIEVKWCGKMVSAAGVRHCPDRGQGLVEMQPPQTAGDLQQFLCAMNWMRQSIPEYNRLTSGLYAVLEEAMKT 213

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BLAST of mRNA_H-paniculata_contig275.7524.1 vs. uniprot
Match: A0A6G0JR09_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JR09_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.450e-14
Identity = 43/112 (38.39%), Postives = 65/112 (58.04%), Query Frame = 1

Query:    1 VDDIGIWTRNWQELMQSLRIVLDRLKARSIYVAVDKVPLFRREMRWCGKVYSVATASHDPERMQGLATMRWPETVGELNPFLQAVNLMRTGLPEF-AVVKPLWDMLDEFLKN 333
            +DDI  +  +  EL+Q L  VL R +A  + +   K   F  E++WCGK+ S A   H P+R QGL  M+ P+T G+L  FL A+N MR  +PE+  +   L+ +L+E +K 
Sbjct:  102 LDDILGYAESEDELLQLLDQVLVRCEAYGLKLHAKKCEFFEIEVKWCGKMVSAAGVRHCPDRGQGLVEMQPPQTAGDLQQFLCAMNWMRQSIPEYNRLTAGLYAVLEEAMKT 213

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BLAST of mRNA_H-paniculata_contig275.7524.1 vs. uniprot
Match: A0A6G0MLJ8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MLJ8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.560e-14
Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 1

Query:    1 VDDIGIWTRNWQELMQSLRIVLDRLKARSIYVAVDKVPLFRREMRWCGKVYSVATASHDPERMQGLATMRWPETVGELNPFLQAVNLMRTGLPEF-AVVKPLWDMLDEFLK 330
            +DDI  +  +  EL+Q L  VL R +A  + +   K   F  E++WCGK+ S A   H P+R QGL  M+ P+T G+L  FL A+N MR  +PE+  +   L+ +L+E +K
Sbjct:  520 LDDILGYAESEDELLQLLDQVLARCEAYGLKLHAKKCEFFEIEVKWCGKMVSAAGVRHCPDRGQGLVEMQPPQTAGDLQQFLCAMNWMRQSIPEYNRLTAGLYAVLEEAMK 630

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BLAST of mRNA_H-paniculata_contig275.7524.1 vs. uniprot
Match: H3H555_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H555_PHYRM)

HSP 1 Score: 77.4 bits (189), Expect = 3.480e-14
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 1

Query:    1 VDDIGIWTRNWQELMQSLRIVLDRLKARSIYVAVDKVPLFRREMRWCGKVYSVATASHDPERMQGLATMRWPETVGELNPFLQAVNLMRTGLPEFA-VVKPLWDMLD 318
            +DDI  +  +   L++ L  VL+R +   + +   K   F  E++WCG++ S     H PER+QGL  M+ P+T G+L  FL AVN MR  +PEF  +   L+D LD
Sbjct:  102 LDDILGYAEDEASLLEVLDKVLERCEKFGLKLHAKKCQFFATEVKWCGRMISAQGVRHCPERIQGLVEMQAPQTAGDLQQFLCAVNWMRQSIPEFTRITAVLYDALD 208

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BLAST of mRNA_H-paniculata_contig275.7524.1 vs. uniprot
Match: H3H4S7_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H4S7_PHYRM)

HSP 1 Score: 77.4 bits (189), Expect = 3.580e-14
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 1

Query:    1 VDDIGIWTRNWQELMQSLRIVLDRLKARSIYVAVDKVPLFRREMRWCGKVYSVATASHDPERMQGLATMRWPETVGELNPFLQAVNLMRTGLPEFA-VVKPLWDMLD 318
            +DDI  +  +   L++ L  VL+R +   + +   K   F  E++WCG++ S     H PER+QGL  M+ P+T G+L  FL AVN MR  +PEF  +   L+D LD
Sbjct:  830 LDDILGYAEDEASLLEVLDKVLERCEKFGLKLHAKKCQFFATEVKWCGRMISAQGVRHCPERIQGLVEMQAPQTAGDLQQFLCAVNWMRQSIPEFTRITAVLYDALD 936

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BLAST of mRNA_H-paniculata_contig275.7524.1 vs. uniprot
Match: H3H656_PHYRM (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H656_PHYRM)

HSP 1 Score: 77.0 bits (188), Expect = 4.750e-14
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 1

Query:    1 VDDIGIWTRNWQELMQSLRIVLDRLKARSIYVAVDKVPLFRREMRWCGKVYSVATASHDPERMQGLATMRWPETVGELNPFLQAVNLMRTGLPEFA-VVKPLWDMLD 318
            +DDI  +  +   L++ L  VL+R +   + +   K   F  E++WCG++ S     H PER+QGL  M+ P+T G+L  FL AVN MR  +PEF  +   L+D LD
Sbjct:  828 LDDILGYAEDEASLLEVLDKVLERCEKFGLKLHAKKCQFFATEVKWCGRMTSAQGVRHCPERIQGLVEMQAPQTAGDLQQFLCAVNWMRQSIPEFTRITAVLYDALD 934

[Close]

BLAST of mRNA_H-paniculata_contig275.7524.1 vs. uniprot
Match: A0A6A3Q7S3_9STRA (Uncharacterized protein n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q7S3_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.860e-14
Identity = 42/111 (37.84%), Postives = 65/111 (58.56%), Query Frame = 1

Query:    1 VDDIGIWTRNWQELMQSLRIVLDRLKARSIYVAVDKVPLFRREMRWCGKVYSVATASHDPERMQGLATMRWPETVGELNPFLQAVNLMRTGLPEF-AVVKPLWDMLDEFLK 330
            +DDI  +  +  EL+Q L  VL R +A  + +   K   F  +++WCGK+ S A   H P+R QGL  M+ P+T G+L  FL A+N MR  +PE+  +   L+ +L+E +K
Sbjct:  655 LDDILGYAESEDELLQLLDQVLARCEAYGLKLHAKKCEFFEIDVKWCGKMVSAAGVRHCPDRGQGLVEMQPPQTAGDLQQFLCAMNWMRQSIPEYNRLTSGLYAVLEEAMK 765

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BLAST of mRNA_H-paniculata_contig275.7524.1 vs. uniprot
Match: A0A6A3GI80_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GI80_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 8.470e-14
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 1

Query:    1 VDDIGIWTRNWQELMQSLRIVLDRLKARSIYVAVDKVPLFRREMRWCGKVYSVATASHDPERMQGLATMRWPETVGELNPFLQAVNLMRTGLPEF 285
            +DDI  +  +  EL+Q L  VL R +A  + +   K   F  E++WCGK+ S A   H P+R QGL  M+ P+T G+L  FL A+N MR  +PE+
Sbjct:  202 LDDILGYAESEDELLQLLDQVLARCEAYGLKLHAKKCEFFEIEVKWCGKMVSAAGVRHCPDRGQGLVEMQPPQTAGDLQQFLCAMNWMRQSIPEY 296

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig275.7524.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig275.7524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K5A5_9PHAE	6.550e-26	50.91	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A2P4Y094_9STRA	1.030e-14	39.64	Uncharacterized protein n=1 Tax=Phytophthora palmi...	[more]
A0A6A3VHD7_9STRA	1.710e-14	38.39	Reverse transcriptase domain-containing protein n=...	[more]
A0A6G0JR09_9STRA	2.450e-14	38.39	Uncharacterized protein n=1 Tax=Phytophthora fraga...	[more]
A0A6G0MLJ8_9STRA	2.560e-14	38.74	Uncharacterized protein n=2 Tax=Phytophthora fraga...	[more]
H3H555_PHYRM	3.480e-14	38.32	Uncharacterized protein n=1 Tax=Phytophthora ramor...	[more]
H3H4S7_PHYRM	3.580e-14	38.32	Uncharacterized protein n=1 Tax=Phytophthora ramor...	[more]
H3H656_PHYRM	4.750e-14	38.32	Reverse transcriptase domain-containing protein n=...	[more]
A0A6A3Q7S3_9STRA	4.860e-14	37.84	Uncharacterized protein n=6 Tax=Phytophthora fraga...	[more]
A0A6A3GI80_9STRA	8.470e-14	41.05	Reverse transcriptase domain-containing protein n=...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig275	contig	H-paniculata_contig275:2608..2958 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	79.7
Seed ortholog evalue	9.9e-13
Seed eggNOG ortholog	164328.Phyra77764
Hectar predicted targeting category	other localisation
EggNOG free text desc.	transposition, RNA-mediated
EggNOG OGs	3QDQ4@4776,COG2801@1,KOG0017@2759
COG Functional cat.	L
Best tax level	Peronosporales
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	351
Cds size	351
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929830.6516545-CDS-H-paniculata_contig275:2607..2958	1622929830.6516545-CDS-H-paniculata_contig275:2607..2958	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig275 2608..2958 -
1691481029.9268525-CDS-H-paniculata_contig275:2607..2958	1691481029.9268525-CDS-H-paniculata_contig275:2607..2958	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig275 2608..2958 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig275.7524.1	prot_H-paniculata_contig275.7524.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig275 2608..2958 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig275:2608..2958-
coding sequence from alignment at H-paniculata_contig275:2608..2958-

protein sequence of mRNA_H-paniculata_contig275.7524.1

>prot_H-paniculata_contig275.7524.1 ID=prot_H-paniculata_contig275.7524.1|Name=mRNA_H-paniculata_contig275.7524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
VDDIGIWTRNWQELMQSLRIVLDRLKARSIYVAVDKVPLFRREMRWCGKV
YSVATASHDPERMQGLATMRWPETVGELNPFLQAVNLMRTGLPEFAVVKP
LWDMLDEFLKNKRQTWR

mRNA from alignment at H-paniculata_contig275:2608..2958-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig275.7524.1 ID=mRNA_H-paniculata_contig275.7524.1|Name=mRNA_H-paniculata_contig275.7524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig275:2608..2958- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGACGATATCGGCATATGGACCCGTAATTGGCAGGAGCTGATGCAATC
GCTGCGGATAGTGCTGGATCGACTCAAGGCACGCAGTATATACGTCGCGG
TCGACAAGGTGCCACTATTCCGGAGGGAGATGAGATGGTGTGGAAAGGTT
TACTCGGTGGCCACTGCCTCTCACGACCCGGAACGAATGCAAGGACTGGC
GACGATGCGCTGGCCGGAAACGGTTGGAGAATTAAATCCATTTCTGCAGG
CAGTCAACCTGATGCGGACCGGGTTGCCGGAGTTTGCGGTGGTGAAACCG
CTATGGGACATGCTGGATGAATTTTTGAAAAACAAGCGCCAAACATGGCG
C

Coding sequence (CDS) from alignment at H-paniculata_contig275:2608..2958-

>mRNA_H-paniculata_contig275.7524.1 ID=mRNA_H-paniculata_contig275.7524.1|Name=mRNA_H-paniculata_contig275.7524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig275:2608..2958- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGACGATATCGGCATATGGACCCGTAATTGGCAGGAGCTGATGCAATC
GCTGCGGATAGTGCTGGATCGACTCAAGGCACGCAGTATATACGTCGCGG
TCGACAAGGTGCCACTATTCCGGAGGGAGATGAGATGGTGTGGAAAGGTT
TACTCGGTGGCCACTGCCTCTCACGACCCGGAACGAATGCAAGGACTGGC
GACGATGCGCTGGCCGGAAACGGTTGGAGAATTAAATCCATTTCTGCAGG
CAGTCAACCTGATGCGGACCGGGTTGCCGGAGTTTGCGGTGGTGAAACCG
CTATGGGACATGCTGGATGAATTTTTGAAAAACAAGCGCCAAACATGGCG
CGTGGACGATATCGGCATATGGACCCGTAATTGGCAGGAGCTGATGCAAT
CGCTGCGGATAGTGCTGGATCGACTCAAGGCACGCAGTATATACGTCGCG
GTCGACAAGGTGCCACTATTCCGGAGGGAGATGAGATGGTGTGGAAAGGT
TTACTCGGTGGCCACTGCCTCTCACGACCCGGAACGAATGCAAGGACTGG
CGACGATGCGCTGGCCGGAAACGGTTGGAGAATTAAATCCATTTCTGCAG
GCAGTCAACCTGATGCGGACCGGGTTGCCGGAGTTTGCGGTGGTGAAACC
GCTATGGGACATGCTGGATGAATTTTTGAAAAACAAGCGCCAAACATGGC
GC