mRNA_H-paniculata_contig27489.7521.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27489.7521.1
Unique NamemRNA_H-paniculata_contig27489.7521.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27489.7521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27489contigH-paniculata_contig27489:612..1177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size566
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929830.1806495-CDS-H-paniculata_contig27489:611..9141622929830.1806495-CDS-H-paniculata_contig27489:611..914Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27489 612..914 +
1691481029.82431-CDS-H-paniculata_contig27489:611..9141691481029.82431-CDS-H-paniculata_contig27489:611..914Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27489 612..914 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929830.1974413-UTR-H-paniculata_contig27489:914..11771622929830.1974413-UTR-H-paniculata_contig27489:914..1177Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27489 915..1177 +
1691481029.834791-UTR-H-paniculata_contig27489:914..11771691481029.834791-UTR-H-paniculata_contig27489:914..1177Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig27489 915..1177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27489.7521.1prot_H-paniculata_contig27489.7521.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27489 612..914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27489.7521.1

>prot_H-paniculata_contig27489.7521.1 ID=prot_H-paniculata_contig27489.7521.1|Name=mRNA_H-paniculata_contig27489.7521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
EKQGESVRVVVKRGGGANGIVRASIRKYHIARVCKKALLCSHLAADLWRV
RHGSELRISWHRVCYTRLMLPSYMSCSRVFLVLATRAHHFSVDFAWFNTP
*
back to top

mRNA from alignment at H-paniculata_contig27489:612..1177+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27489.7521.1 ID=mRNA_H-paniculata_contig27489.7521.1|Name=mRNA_H-paniculata_contig27489.7521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=566bp|location=Sequence derived from alignment at H-paniculata_contig27489:612..1177+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAAACAGGGGGAAAGCGTACGTGTAGTCGTGAAGAGGGGGGGGGGAGC
AAACGGAATTGTAAGAGCATCTATCCGAAAGTATCATATCGCAAGAGTAT
GCAAGAAGGCTCTACTGTGTAGCCACTTAGCAGCTGATTTATGGCGTGTG
CGACACGGTTCAGAGTTGCGAATAAGTTGGCATCGTGTGTGTTACACTCG
ATTGATGTTACCGAGTTACATGTCTTGTTCCAGAGTTTTTCTTGTCTTGG
CGACTCGTGCGCATCATTTTAGTGTAGATTTTGCGTGGTTTAACACACCG
TGATGTTGGTGAGCTATGGAGGGGGATTGCCGTTGTAGTTTTAGCAGTTT
ACCACCTGTATTCCGCTGAATCGAATTGCGTGATGCCTAACGAACCCGTG
AGGGAAAACGATAGTCCATATATATTTGCGGGGGGTACTACTTTCCAAGA
AAAAAAATACCCGCACCGTTTTCTTTCGTTATTGGTTACGTTTACACAAG
GAATCACTTGATTGATCCCAAAACTGTAGTTGGCATGTGACATCATCCAC
GATCCGAAGTCAACGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig27489:612..1177+

>mRNA_H-paniculata_contig27489.7521.1 ID=mRNA_H-paniculata_contig27489.7521.1|Name=mRNA_H-paniculata_contig27489.7521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig27489:612..1177+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGAAACAGGGGGAAAGCGTACGTGTAGTCGTGAAGAGGGGGGGGGGAGC
AAACGGAATTGTAAGAGCATCTATCCGAAAGTATCATATCGCAAGAGTAT
GCAAGAAGGCTCTACTGTGTAGCCACTTAGCAGCTGATTTATGGCGTGTG
CGACACGGTTCAGAGTTGCGAATAAGTTGGCATCGTGTGTGTTACACTCG
ATTGATGTTACCGAGTTACATGTCTTGTTCCAGAGTTTTTCTTGTCTTGG
CGACTCGTGCGCATCATTTTAGTGTAGATTTTGCGTGGTTTAACACACCG
TGAGAGAAACAGGGGGAAAGCGTACGTGTAGTCGTGAAGAGGGGGGGGGG
AGCAAACGGAATTGTAAGAGCATCTATCCGAAAGTATCATATCGCAAGAG
TATGCAAGAAGGCTCTACTGTGTAGCCACTTAGCAGCTGATTTATGGCGT
GTGCGACACGGTTCAGAGTTGCGAATAAGTTGGCATCGTGTGTGTTACAC
TCGATTGATGTTACCGAGTTACATGTCTTGTTCCAGAGTTTTTCTTGTCT
TGGCGACTCGTGCGCATCATTTTAGTGTAGATTTTGCGTGGTTTAACACA
CCGTGA
back to top