mRNA_H-paniculata_contig11172.753.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11172.753.1
Unique NamemRNA_H-paniculata_contig11172.753.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11172.753.1 vs. uniprot
Match: A0A8B8ZHM9_PHODC (probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B8ZHM9_PHODC)

HSP 1 Score: 50.1 bits (118), Expect = 3.150e-5
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    7 DAVRCYQTAINLRPDFAIAYGNLASCYYDSGCLDQA 114
            +A+ CYQ A+ + PD+A+AY NLAS YY+ G LD A
Sbjct:    6 EAIMCYQRAVQVHPDYAMAYANLASTYYEQGQLDLA 41
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BLAST of mRNA_H-paniculata_contig11172.753.1 vs. uniprot
Match: A0A453BT27_AEGTS (Uncharacterized protein n=3 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453BT27_AEGTS)

HSP 1 Score: 48.9 bits (115), Expect = 7.740e-5
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 IPDAVRCYQTAINLRPDFAIAYGNLASCYYDSGCLD 108
            + +AV CYQ A+  RPD+A+AYGNLA+ YY+   LD
Sbjct:   16 LQEAVSCYQRALQARPDYAMAYGNLATIYYEQRQLD 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11172.753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A8B8ZHM9_PHODC3.150e-555.56probable UDP-N-acetylglucosamine--peptide N-acetyl... [more]
A0A453BT27_AEGTS7.740e-555.56Uncharacterized protein n=3 Tax=Aegilops tauschii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11172contigH-paniculata_contig11172:2291..3367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928822.6077464-CDS-H-paniculata_contig11172:2290..23881622928822.6077464-CDS-H-paniculata_contig11172:2290..2388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11172 2291..2388 +
1691480633.902042-CDS-H-paniculata_contig11172:2290..23881691480633.902042-CDS-H-paniculata_contig11172:2290..2388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11172 2291..2388 +
1622928822.8431969-CDS-H-paniculata_contig11172:3234..33671622928822.8431969-CDS-H-paniculata_contig11172:3234..3367Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11172 3235..3367 +
1691480633.9110382-CDS-H-paniculata_contig11172:3234..33671691480633.9110382-CDS-H-paniculata_contig11172:3234..3367Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11172 3235..3367 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11172.753.1prot_H-paniculata_contig11172.753.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11172 2291..3367 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11172.753.1

>prot_H-paniculata_contig11172.753.1 ID=prot_H-paniculata_contig11172.753.1|Name=mRNA_H-paniculata_contig11172.753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
IPDAVRCYQTAINLRPDFAIAYGNLASCYYDSGCLDQAIRTFRYAIQLEP
NFPDAYNNLGNALRESGQLEVTMPKR*
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mRNA from alignment at H-paniculata_contig11172:2291..3367+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11172.753.1 ID=mRNA_H-paniculata_contig11172.753.1|Name=mRNA_H-paniculata_contig11172.753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1077bp|location=Sequence derived from alignment at H-paniculata_contig11172:2291..3367+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCCAGATGCAGTTCGGTGCTACCAGACAGCGATTAACCTCCGGCCGGA
TTTTGCTATCGCCTACGGCAACCTCGCTAGCTGCTACTATGACTCAGGGT
AAGTAGCATTCATGACCCCATGTCATGATCCAGAGCGAGCCAATTTTAGT
ATTTTCGTTTGGGCATCGGCGAGGGTGGATGGTATGTCGACGCTATGTCT
TCTTGGTGGACCAGATCCTCATCGACGAGCTTATCTGTTTTGCTCTGTTT
TGCCTCTTTTTCTTTTTTTTTCACAATAGTTGTATCTAGACTACGCGTTT
AGTCTATAAGTACGCTGGGCTACTAGAGACAGTTTTATTCTCGATGAACA
AAGGACTGGATGATTTGTATTGGATTTTCGATAATATATACCGACTGGAA
CAAATGCGGAGGTTTACGCAATGTCATATATCCTCAGCGCGCCCACTTGG
TCATTATCCATTTGTGACTCTTACAATATTCATGGTATGAAATTCTAGAT
ATATTTAATTCGTACACCAGCGACAGAGCCATGGCCCCGCCTCGGTACTG
TTCATGCGTCGTCCTGGACTCGGGGACTCGGGGACTCACTGTGCTCGTAG
TGGGAGACTCGCAAAGTGAAGCAGCACTGTGTGCTGTGTTGCGCTATGGT
CTGCTACCCTATGGTTTTTATTTGTGTAGTGGTTGACAGTTATGTGCCAT
CACGTAATAAGTATGTGGAATTTGGAATTTAATGCATGCCATTAAGTAAA
AATTTTGAAATTGGGTCTGAATTTTTTCGATGAGAAGCCGAATTACAGCA
GACGGGACACCACGTTAAAAAAAAAGAAAAAACTCTAGTCTTGCTTTTAA
TAATACAATGCCCAACTATTTTGAACTAAACGGTGCTCTTGATTTCAAGT
ATTTTACATCATTGAACATCATATTTTTTGTTGAAAAAATACAGGTGCTT
GGATCAGGCCATCCGTACATTCCGATACGCGATCCAGCTGGAGCCTAATT
TTCCTGATGCCTACAACAATCTCGGAAACGCCCTGAGAGAGTCGGGCCAG
CTCGAGGTGACCATGCCAAAGAGATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig11172:2291..3367+

>mRNA_H-paniculata_contig11172.753.1 ID=mRNA_H-paniculata_contig11172.753.1|Name=mRNA_H-paniculata_contig11172.753.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig11172:2291..3367+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCCAGATGCAGTTCGGTGCTACCAGACAGCGATTAACCTCCGGCCGGA
TTTTGCTATCGCCTACGGCAACCTCGCTAGCTGCTACTATGACTCAGGAT
TCCAGATGCAGTTCGGTGCTACCAGACAGCGATTAACCTCCGGCCGGATT
TTGCTATCGCCTACGGCAACCTCGCTAGCTGCTACTATGACTCAGGGTGC
TTGGATCAGGCCATCCGTACATTCCGATACGCGATCCAGCTGGAGCCTAA
TTTTCCTGATGCCTACAACAATCTCGGAAACGCCCTGAGAGAGTCGGGCC
AGCTCGAGGTGACCATGCCAAAGAGATAAGTGCTTGGATCAGGCCATCCG
TACATTCCGATACGCGATCCAGCTGGAGCCTAATTTTCCTGATGCCTACA
ACAATCTCGGAAACGCCCTGAGAGAGTCGGGCCAGCTCGAGGTGACCATG
CCAAAGAGATAA
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