mRNA_H-paniculata_contig27481.7520.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27481.7520.1
Unique NamemRNA_H-paniculata_contig27481.7520.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27481.7520.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 3.640e-21
Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 VSLEYASTNTPQQIGMSERVGRTFAAMVRCMLADSGLPKFLQEELMFTAAFLGNKAPHSAIGMQSP 198
            V LEYASTNTPQQIG +ER GRT AAMVRC+L DSGLPKFL   LM TA +L N+ PH+A+G  +P
Sbjct:  354 VKLEYASTNTPQQIGANERAGRTLAAMVRCLLTDSGLPKFLWGGLMQTAVYLSNRVPHAALGNITP 419
[Close]
BLAST of mRNA_H-paniculata_contig27481.7520.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.380e-20
Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    7 LEYASTNTPQQIGMSERVGRTFAAMVRCMLADSGLPKFLQEELMFTAAFLGNKAPHSAIGMQSP 198
            LEYASTNTPQQ+G +ER GRT AAMVRC+L DSGLP+FL  +LM TAA+L N+ PH+A+G  +P
Sbjct:   83 LEYASTNTPQQMGANERAGRTLAAMVRCILTDSGLPQFLWGQLMQTAAYLSNRVPHAALGNITP 146
[Close]
BLAST of mRNA_H-paniculata_contig27481.7520.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.070e-19
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 VSLEYASTNTPQQIGMSERVGRTFAAMVRCMLADSGLPKFLQEELMFTAAFLGNKAPHSAIGMQSP 198
            + L +ASTNTPQ+IG +ER+GRT A MVRC+LADSGLP FL EEL  TA++L N++PHSA    +P
Sbjct:  414 IKLLFASTNTPQRIGANERIGRTLAGMVRCLLADSGLPHFLWEELFMTASYLSNRSPHSASDNVTP 479
[Close]
BLAST of mRNA_H-paniculata_contig27481.7520.1 vs. uniprot
Match: A0A6H5K5H2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H2_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.120e-16
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    1 VSLEYASTNTPQQIGMSERVGRTFAAMVRCMLADSGLPKFLQEELMFTAAFLGNKAPHSAIGMQSP 198
            + LEYA+TNTPQQIG+SER G+T A + RC+L D   P  +  ELM TAA+L N++PHSA+G  +P
Sbjct:   59 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATP 124
[Close]
BLAST of mRNA_H-paniculata_contig27481.7520.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.150e-16
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    1 VSLEYASTNTPQQIGMSERVGRTFAAMVRCMLADSGLPKFLQEELMFTAAFLGNKAPHSAIGMQSP 198
            + LEYA+TNTPQQIG+SER G+T A + RC+L D   P  +  ELM TAA+L N++PHSA+G  +P
Sbjct:  517 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATP 582
[Close]
BLAST of mRNA_H-paniculata_contig27481.7520.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.160e-16
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    1 VSLEYASTNTPQQIGMSERVGRTFAAMVRCMLADSGLPKFLQEELMFTAAFLGNKAPHSAIGMQSP 198
            + LEYA+TNTPQQIG+SER G+T A + RC+L D   P  +  ELM TAA+L N++PHSA+G  +P
Sbjct:  193 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATP 258
[Close]
BLAST of mRNA_H-paniculata_contig27481.7520.1 vs. uniprot
Match: A0A6H5JSL6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL6_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.170e-16
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    1 VSLEYASTNTPQQIGMSERVGRTFAAMVRCMLADSGLPKFLQEELMFTAAFLGNKAPHSAIGMQSP 198
            + LEYA+TNTPQQIG+SER G+T A + RC+L D   P  +  ELM TAA+L N++PHSA+G  +P
Sbjct:  389 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATP 454
[Close]
BLAST of mRNA_H-paniculata_contig27481.7520.1 vs. uniprot
Match: A0A6H5JRJ1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ1_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.170e-16
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    1 VSLEYASTNTPQQIGMSERVGRTFAAMVRCMLADSGLPKFLQEELMFTAAFLGNKAPHSAIGMQSP 198
            + LEYA+TNTPQQIG+SER G+T A + RC+L D   P  +  ELM TAA+L N++PHSA+G  +P
Sbjct:  193 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATP 258
[Close]
BLAST of mRNA_H-paniculata_contig27481.7520.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.170e-16
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    1 VSLEYASTNTPQQIGMSERVGRTFAAMVRCMLADSGLPKFLQEELMFTAAFLGNKAPHSAIGMQSP 198
            + LEYA+TNTPQQIG+SER G+T A + RC+L D   P  +  ELM TAA+L N++PHSA+G  +P
Sbjct:  193 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATP 258
[Close]
BLAST of mRNA_H-paniculata_contig27481.7520.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.170e-16
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:    1 VSLEYASTNTPQQIGMSERVGRTFAAMVRCMLADSGLPKFLQEELMFTAAFLGNKAPHSAIGMQSP 198
            + LEYA+TNTPQQIG+SER G+T A + RC+L D   P  +  ELM TAA+L N++PHSA+G  +P
Sbjct:  193 IKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATP 258
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27481.7520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWF9_9PHAE3.640e-2168.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L6R7_9PHAE1.380e-2067.19Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1J1_9PHAE2.070e-1962.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5H2_9PHAE2.120e-1656.06Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KVF6_9PHAE2.150e-1656.06Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K500_9PHAE2.160e-1656.06Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JSL6_9PHAE2.170e-1656.06Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRJ1_9PHAE2.170e-1656.06Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JJR8_9PHAE2.170e-1656.06Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KCT3_9PHAE2.170e-1656.06Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27481contigH-paniculata_contig27481:1254..1454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score60.5
Seed ortholog evalue3.5e-07
Seed eggNOG ortholog7260.FBpp0244144
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pfam:UBN2_2
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SH01@50557,41WYJ@6656,457GT@7147,45YIF@7214,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelDrosophilidae
Best eggNOG OGNA|NA|NA
Exons1
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929830.147111-CDS-H-paniculata_contig27481:1253..14541622929830.147111-CDS-H-paniculata_contig27481:1253..1454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27481 1254..1454 -
1691481029.8141491-CDS-H-paniculata_contig27481:1253..14541691481029.8141491-CDS-H-paniculata_contig27481:1253..1454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27481 1254..1454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27481.7520.1prot_H-paniculata_contig27481.7520.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27481 1254..1454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27481.7520.1

>prot_H-paniculata_contig27481.7520.1 ID=prot_H-paniculata_contig27481.7520.1|Name=mRNA_H-paniculata_contig27481.7520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
VSLEYASTNTPQQIGMSERVGRTFAAMVRCMLADSGLPKFLQEELMFTAA
FLGNKAPHSAIGMQSP*
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mRNA from alignment at H-paniculata_contig27481:1254..1454-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27481.7520.1 ID=mRNA_H-paniculata_contig27481.7520.1|Name=mRNA_H-paniculata_contig27481.7520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=201bp|location=Sequence derived from alignment at H-paniculata_contig27481:1254..1454- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTCACTCGAGTACGCCAGCACCAACACGCCACAACAAATCGGCATGTC
CGAGCGCGTCGGAAGAACCTTTGCGGCTATGGTGAGATGCATGCTTGCCG
ACAGCGGACTGCCAAAGTTTCTGCAGGAAGAATTGATGTTCACGGCCGCA
TTTCTGGGCAATAAGGCACCGCACTCCGCGATCGGCATGCAGTCTCCGTA
A
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Coding sequence (CDS) from alignment at H-paniculata_contig27481:1254..1454-

>mRNA_H-paniculata_contig27481.7520.1 ID=mRNA_H-paniculata_contig27481.7520.1|Name=mRNA_H-paniculata_contig27481.7520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig27481:1254..1454- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTCACTCGAGTACGCCAGCACCAACACGCCACAACAAATCGGCATGTC
CGAGCGCGTCGGAAGAACCTTTGCGGCTATGGTGAGATGCATGCTTGCCG
ACAGCGGACTGCCAAAGTTTCTGCAGGAAGAATTGATGTTCACGGCCGCA
TTTCTGGGCAATAAGGCACCGCACTCCGCGATCGGCATGCAGTCTCCGTA
AGTGTCACTCGAGTACGCCAGCACCAACACGCCACAACAAATCGGCATGT
CCGAGCGCGTCGGAAGAACCTTTGCGGCTATGGTGAGATGCATGCTTGCC
GACAGCGGACTGCCAAAGTTTCTGCAGGAAGAATTGATGTTCACGGCCGC
ATTTCTGGGCAATAAGGCACCGCACTCCGCGATCGGCATGCAGTCTCCGT
AA
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