mRNA_H-paniculata_contig27478.7516.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27478.7516.1
Unique NamemRNA_H-paniculata_contig27478.7516.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27478.7516.1 vs. uniprot
Match: D7FY79_ECTSI (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY79_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.260e-27
Identity = 50/78 (64.10%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:    7 QREPQHATVYTGSFLDFDWSDGDVVFANSTCFPADLLNQLACQAERLKAGAVVITFTNSLPSQRFELLRQKRFEMSWG 240
            +R PQ+A+V+ GSFL++DWSDGD VFANSTCFP DL++ LA QAE LK G++V+TFT  L S  FE+L ++RFEMSWG
Sbjct:  167 RRCPQNASVFAGSFLEYDWSDGDCVFANSTCFPEDLMDALARQAEELKPGSIVVTFTKGLDSTAFEVLSKRRFEMSWG 244
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BLAST of mRNA_H-paniculata_contig27478.7516.1 vs. uniprot
Match: A0A6H5K9P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9P8_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 5.010e-26
Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:   19 QHATVYTGSFLDFDWSDGDVVFANSTCFPADLLNQLACQAERLKAGAVVITFTNSLPSQRFELLRQKRFEMSWG 240
            Q+A+V+ GSFL++DWSDGD VFANSTCFP DL++ LA QAE LK G++V+TFT  L S  FE+L ++RFEMSWG
Sbjct:  145 QNASVFAGSFLEYDWSDGDCVFANSTCFPEDLMDALARQAEELKPGSIVVTFTKGLDSTAFEVLSKRRFEMSWG 218
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BLAST of mRNA_H-paniculata_contig27478.7516.1 vs. uniprot
Match: A0A7S1TW39_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TW39_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.140e-25
Identity = 46/76 (60.53%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:   13 EPQHATVYTGSFLDFDWSDGDVVFANSTCFPADLLNQLACQAERLKAGAVVITFTNSLPSQRFELLRQKRFEMSWG 240
            +PQ  TV+ GSFLD+DWSDGDV+FANSTCF  DL+ ++A +A  L+ GA VITFT  L S+ FE+L +KR++MSWG
Sbjct:  187 QPQEVTVHQGSFLDYDWSDGDVIFANSTCFDDDLMRKIAVRAAALQPGAYVITFTKGLESEDFEVLFKKRYDMSWG 262
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BLAST of mRNA_H-paniculata_contig27478.7516.1 vs. uniprot
Match: A0A7S2HTB0_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HTB0_9STRA)

HSP 1 Score: 102 bits (254), Expect = 2.910e-24
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:   10 REPQHATVYTGSFLDFDWSDGDVVFANSTCFPADLLNQLACQAERLKAGAVVITFTNSLPSQRFELLRQKRFEMSWG 240
            +  QH TVY GS L FDW+DGDVVFANSTCF  +L++ L+ +AE LK GA VITFT  L S +FE + +KR++MSWG
Sbjct:  211 KRSQHVTVYQGSVLTFDWADGDVVFANSTCFDDNLMDGLSAKAELLKPGAFVITFTKGLTSDKFETMERKRYKMSWG 287
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BLAST of mRNA_H-paniculata_contig27478.7516.1 vs. uniprot
Match: A0A835Z0J1_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0J1_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.140e-23
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:   13 EPQHATVYTGSFLDFDWSDGDVVFANSTCFPADLLNQLACQAERLKAGAVVITFTNSLPSQRFELLRQKRFEMSWG 240
            + Q  T++ GS +DFDWSDGDVVFANSTCF   L+  +A  A+RL+ GA++ITFT  L S  FE+L +KRFEMSWG
Sbjct:  181 QAQGLTMHLGSLIDFDWSDGDVVFANSTCFDDALMASIAAAAQRLRPGALLITFTKGLESAAFEVLDRKRFEMSWG 256
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BLAST of mRNA_H-paniculata_contig27478.7516.1 vs. uniprot
Match: A0A7R9U3G4_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3G4_9STRA)

HSP 1 Score: 100 bits (250), Expect = 4.700e-23
Identity = 47/76 (61.84%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:   13 EPQHATVYTGSFLDFDWSDGDVVFANSTCFPADLLNQLACQAERLKAGAVVITFTNSLPSQRFELLRQKRFEMSWG 240
            +PQ   V+  SFLDFDWSDGDVVFANSTC+  DL+ +L  QA  LK GA VITFT  L S  FE+L +KR++MSWG
Sbjct:  212 QPQEVAVHQCSFLDFDWSDGDVVFANSTCYDEDLMLKLTAQASALKPGAYVITFTKGLESPDFEVLFKKRYDMSWG 287
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BLAST of mRNA_H-paniculata_contig27478.7516.1 vs. uniprot
Match: A0A7S4DAD9_HETAK (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAD9_HETAK)

HSP 1 Score: 97.4 bits (241), Expect = 4.400e-22
Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:   19 QHATVYTGSFLDFDWSDGDVVFANSTCFPADLLNQLACQAERLKAGAVVITFTNSLPSQRFELLRQKRFEMSWG 240
            Q A V  GSFLD+DWSDGD+VFANSTCF  DL+N ++  AE ++ GAV I+FT  L S +FE+L +KR++MSWG
Sbjct:  204 QEAAVQRGSFLDYDWSDGDLVFANSTCFDDDLMNAMSKAAEAMQPGAVFISFTKGLCSPKFEVLDKKRYKMSWG 277
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BLAST of mRNA_H-paniculata_contig27478.7516.1 vs. uniprot
Match: A0A1V9ZH19_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZH19_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.200e-20
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:   16 PQHATVYTGSFLDFDWSDGDVVFANSTCFPADLLNQLACQAERLKAGAVVITFTNSLPSQRFELLRQKRFEMSWG 240
            P     +  SFLD DW+D DVVFANSTCF A LL  LA QAERL+AGA VITFT  L S  F+++ ++R+ MSWG
Sbjct:  218 PLAVAFFHSSFLDLDWADADVVFANSTCFDAALLGALAAQAERLRAGAHVITFTKPLESTAFDIVFKQRYGMSWG 292
[Close]
BLAST of mRNA_H-paniculata_contig27478.7516.1 vs. uniprot
Match: A0A7S4ED92_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ED92_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.130e-20
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:   10 REPQHATVYTGSFLDFDWSDGDVVFANSTCFPADLLNQLACQAERLKAGAVVITFTNSLPSQRFELLRQKRFEMSWG 240
            R  +   V   S LD DWSDGDVVFANSTCF  DL+  +A QAERLK G   ITFT  L S  F+++ +KR++MSWG
Sbjct:  191 RTSKKIEVQCNSMLDVDWSDGDVVFANSTCFEDDLMGSMARQAERLKPGTYFITFTKGLGSDAFDVIERKRYKMSWG 267
[Close]
BLAST of mRNA_H-paniculata_contig27478.7516.1 vs. uniprot
Match: A0A7S2XW22_9STRA (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW22_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.530e-20
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 1 
Query:    1 MRQREPQHATVYTGSFL-DFDWSDGDVVFANSTCFPADLLNQLACQAERLKAGAVVITFTNSLPSQRFELLRQKRFEMSWG 240
            +   +PQ A V+ GSF+ D DWSDGD+VFANSTC+  DL+  L+  AE L+ G+ +I+FT  L S +FE+L +KR+ MSWG
Sbjct:  187 LNSTKPQDAEVHHGSFIGDHDWSDGDIVFANSTCYDDDLMQSLSDAAEALRPGSFLISFTKGLSSPKFEVLDKKRYRMSWG 267
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27478.7516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY79_ECTSI1.260e-2764.10Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A6H5K9P8_9PHAE5.010e-2664.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1TW39_9STRA2.140e-2560.53Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A7S2HTB0_9STRA2.910e-2459.74Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A835Z0J1_9STRA2.140e-2359.21Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A7R9U3G4_9STRA4.700e-2361.84Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A7S4DAD9_HETAK4.400e-2259.46Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A1V9ZH19_9STRA1.200e-2058.67Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A7S4ED92_9STRA2.130e-2055.84Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A7S2XW22_9STRA5.530e-2051.85Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27478contigH-paniculata_contig27478:1381..3098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue4.2e-23
Seed eggNOG ortholog2880.D7FY79
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Histone methylation protein DOT1
EggNOG OGs2BR00@1,2S1KF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size240
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929829.591964-CDS-H-paniculata_contig27478:1380..15151622929829.591964-CDS-H-paniculata_contig27478:1380..1515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27478 1381..1515 +
1691481029.5816364-CDS-H-paniculata_contig27478:1380..15151691481029.5816364-CDS-H-paniculata_contig27478:1380..1515Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27478 1381..1515 +
1622929829.6187716-CDS-H-paniculata_contig27478:2993..30981622929829.6187716-CDS-H-paniculata_contig27478:2993..3098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27478 2994..3098 +
1691481029.5966697-CDS-H-paniculata_contig27478:2993..30981691481029.5966697-CDS-H-paniculata_contig27478:2993..3098Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27478 2994..3098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27478.7516.1prot_H-paniculata_contig27478.7516.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27478 1381..3098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27478.7516.1

>prot_H-paniculata_contig27478.7516.1 ID=prot_H-paniculata_contig27478.7516.1|Name=mRNA_H-paniculata_contig27478.7516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MRQREPQHATVYTGSFLDFDWSDGDVVFANSTCFPADLLNQLACQAERLK
AGAVVITFTNSLPSQRFELLRQKRFEMSWG
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mRNA from alignment at H-paniculata_contig27478:1381..3098+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27478.7516.1 ID=mRNA_H-paniculata_contig27478.7516.1|Name=mRNA_H-paniculata_contig27478.7516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1718bp|location=Sequence derived from alignment at H-paniculata_contig27478:1381..3098+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGACAACGCGAACCACAGCATGCTACCGTGTATACGGGATCGTTTCT
GGATTTTGATTGGTCCGACGGAGACGTGGTTTTCGCCAACAGCACGTGTT
TCCCGGCAGATCTATTGAACCAGCTAGCTTGCCAGGTACAACTCTCTTTT
CTCTGGGACGGTGTGTACTGTTGGATTGACGTACAGAGCAAGTTTGATTG
TCTGATGGTTGCCTCATGTATCCTGTGACCGTTTTCATGAATCAGTATCA
GTTTCCATTTTCAGATTGTATGTGCCTCAAGAGGCATTTGCTTGAGCTGT
GACAATGTTTGTTAACATCCTGTCGACGTTCAGTGTTTTCATCGATCAAT
GTCATGTGCCATTTTCAGGGTGTATCTGCCTCAAATAGCATCTGCTCGAG
CTGTGACACTGCTTGTAAACATCCTGTCGACGTTCAGTGTTTTCATCGAT
CAATGTCATCTTCCATTTTAGGAGCGTATCTGCCTCTTGGTAACGCCGTT
GAATCGGGTATTGTCACCTGACTGTTTTTTTCCCCCAATTGTTTTGGTCC
TGAGGTGTCTACCCAACCGTTGCTACCTACAGGGCACACCCGCTGCCAGA
GGTGTGGTGTGGCTCCAGTGTTAGATGCCTGGTTTTCTTCTAGAAGCCTT
TGTCCTTTGGCCGCGGGTCTGAGAAAGTGGGTTGAAGTGTAGGGGAAAAA
CTGCCTACTTGAGCGGTGACGGATCTTTGTTGGTTGGTACAGAGAGTTAG
ATACAGACAGTAGCTACGTACGTGGGGGAGATCGTGTGACTGTGTTGTTT
AATCGAATCAGCTGTATAGTAGTATAGTCAGGGCTACGCCCGTGCAGTCA
TGCTTCCATATTTTTGTTCTCCTACTTTCCGCTCGCTGTGCTCGCATGCA
CGGACAAATGTCTGTGAAGGAGATCTGTATTTTTGAAGCTATTTTTGAAG
ATTTTTGCGTAAAGAGATAAAATAAATGATTTCGAATTGACGGTGATCAT
TGACCATCGTGTACTCGGTTTTGGCGATACGATTTTTGTCGTTGTAGGAA
GAGCGTTCCCGCGCTGTGTCGTACCTAGCAGTGATTGCATAAGAGTGTGT
GTTGTCGATCAAAAACAAGAAAATAAATCATCTGTCAATTTTCATCGACT
TTTTGTATGAATCTAGAGCATTGCTGTTTGATGCTCATGCCGTCAGCGTA
AATACGCCAAACACAGACCGAGAGACCGTTTATTCTACGTTGTGCCCCGG
GAAGATCATGTACCATTGAGGACTGATCTGAGTAATAAATGGTAAAATCG
AATACACAGGGGTCGGCGATTTTTTTTCGATGTGTCCACACAGTCTGATT
CAGGCGACCAGTTTTTAGTTTCCATCGCGAATGGTCTCAGTATTTGTATC
CGTCATTATCCAGGGGGTGAAATGCTGTGTAAGCACGGGTAGGACGGGGT
TTTTGCTTTTGTCCATCTACGCGCGTGTTCGTTGCTTTGAGGTGGGCCTA
AGAAAATTCCTGTGATGGTGATCAATTATGTGCGAATTGAAGCTTGGCTT
GTTTGATATTGTCGCGCTGCTGCCATCGATCGTTACGATATGAAAATAAT
GGACAAAAAACAGGCGGAGAGGTTGAAGGCTGGCGCTGTGGTGATTACGT
TCACGAATAGTCTCCCCTCTCAACGGTTCGAGCTGTTGAGGCAGAAGCGC
TTCGAGATGAGCTGGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig27478:1381..3098+

>mRNA_H-paniculata_contig27478.7516.1 ID=mRNA_H-paniculata_contig27478.7516.1|Name=mRNA_H-paniculata_contig27478.7516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig27478:1381..3098+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGACAACGCGAACCACAGCATGCTACCGTGTATACGGGATCGTTTCT
GGATTTTGATTGGTCCGACGGAGACGTGGTTTTCGCCAACAGCACGTGTT
TCCCGGCAGATCTATTGAACCAGCTAGCTTGCCAGATGCGACAACGCGAA
CCACAGCATGCTACCGTGTATACGGGATCGTTTCTGGATTTTGATTGGTC
CGACGGAGACGTGGTTTTCGCCAACAGCACGTGTTTCCCGGCAGATCTAT
TGAACCAGCTAGCTTGCCAGGCGGAGAGGTTGAAGGCTGGCGCTGTGGTG
ATTACGTTCACGAATAGTCTCCCCTCTCAACGGTTCGAGCTGTTGAGGCA
GAAGCGCTTCGAGATGAGCTGGGGTGCGGAGAGGTTGAAGGCTGGCGCTG
TGGTGATTACGTTCACGAATAGTCTCCCCTCTCAACGGTTCGAGCTGTTG
AGGCAGAAGCGCTTCGAGATGAGCTGGGGT
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