mRNA_H-paniculata_contig27462.7514.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig27462.7514.1 vs. uniprot
Match: D7FR56_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR56_ECTSI) HSP 1 Score: 239 bits (609), Expect = 3.280e-70 Identity = 112/143 (78.32%), Postives = 125/143 (87.41%), Query Frame = 1
Query: 1 MLCSLRVLLWCTMAQWAVRKPPSVVLLYDLVSQGQQLTQVDHDLLETLGTMARRASVWEAAVHDAFCAPKDNVSTPIDMKVLHTLLAEAKHIPVSLPLEPKVVAALEDGGNRYCLCRGPNDGSFMVGCDTCEEWFHGACVKLK 429
MLCSLRVLLWCTMAQWAVRKPPSV+LLYDLVSQG QLTQVDH+LLETLG MA+RAS+WEA+V DAF P +NV + ID+ L LL EAKHIPV L LEPKVVAAL+DGGNRYCLCRGPNDG+FMV CD C++WFHG+CV LK
Sbjct: 1285 MLCSLRVLLWCTMAQWAVRKPPSVILLYDLVSQGSQLTQVDHNLLETLGHMAKRASLWEASVRDAFRGPAENVDSLIDVDTLQKLLEEAKHIPVLLSLEPKVVAALDDGGNRYCLCRGPNDGTFMVQCDDCDQWFHGSCVNLK 1427
BLAST of mRNA_H-paniculata_contig27462.7514.1 vs. uniprot
Match: A0A7S2FB18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FB18_9STRA) HSP 1 Score: 114 bits (285), Expect = 1.490e-28 Identity = 54/121 (44.63%), Postives = 75/121 (61.98%), Query Frame = 1
Query: 64 PSVVLLYDLVSQGQQLTQVDHDLLETLGTMARRASVWEAAVHDAFCAPKDNVSTPIDMKVLHTLLAEAKHIPVSLPLEPKVVAALEDGGNRYCLCRGPNDGSFMVGCDTCEEWFHGACVKL 426
P + +L+ LVS+G L ++D ++ TL + +RA W + H P+ V DM +L L EA IPV +P + +V + +EDGG RYCLCRG +DG FM+GCD CEEWFHG CV +
Sbjct: 3 PRLEVLHALVSRGMDL-RIDESVMATLRGLLQRAQDWSSTAHHELSKPEPAV---FDMPLLTKLKEEALTIPVRIPEDRRVTSVIEDGGGRYCLCRGASDGGFMIGCDFCEEWFHGKCVNV 119
BLAST of mRNA_H-paniculata_contig27462.7514.1 vs. uniprot
Match: A0A835YJI1_9STRA (PLU-1-like protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJI1_9STRA) HSP 1 Score: 115 bits (288), Expect = 5.400e-27 Identity = 62/158 (39.24%), Postives = 84/158 (53.16%), Query Frame = 1
Query: 13 LRVLLWCTMAQWAVRKPPSVVLLYDLVSQGQQLTQVDHDLLETLGTMARRASVWEAAVHDAFCAPKDNVSTP-------------------IDMKVLHTLLAEA-KHIPVSLPLEPKVVAALEDGGNRYCLCRGPNDGSFMVGCDTCEEWFHGACVKL 426
LRV++WC + QW++R PS + L Q + L D L E L + RRA + AAV D F AP + + T ID+K L L+ + +P+ + + AA+EDGG RYC+CRGPNDG FM+ CD CEEWFHG C +
Sbjct: 2238 LRVVVWCAIMQWSLRARPSHYDIGPLSQQVKALKLTDPALAEVLEVIDRRARQYGAAVKDLFKAPTEQMVTKKNEPXXXXXXXXGGATADRIDLKKLQQLVERMERELPIDTKADIQARAAMEDGGYRYCVCRGPNDGRFMIQCDNCEEWFHGGCANI 2395
BLAST of mRNA_H-paniculata_contig27462.7514.1 vs. uniprot
Match: B8BTQ0_THAPS (PHD-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTQ0_THAPS) HSP 1 Score: 101 bits (252), Expect = 3.250e-23 Identity = 44/95 (46.32%), Postives = 65/95 (68.42%), Query Frame = 1
Query: 142 LGTMARRASVWEAAVHDAFCAPKDNVSTPIDMKVLHTLLAEAKHIPVSLPLEPKVVAALEDGGNRYCLCRGPNDGSFMVGCDTCEEWFHGACVKL 426
L +M+ RA +W+A A A K + P DM +L LL AK IPV++P E ++++ LED G R+C+C GP+DGS M+GCD C+ W+HG+C+K+
Sbjct: 2 LKSMSSRALIWQAKAKKALLA-KAGSTQPFDMVLLKELLFAAKQIPVTMPEEARILSTLEDRGLRHCVCGGPSDGSLMLGCDNCDRWYHGSCMKV 95
BLAST of mRNA_H-paniculata_contig27462.7514.1 vs. uniprot
Match: A0A6U6EWH2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6EWH2_9STRA) HSP 1 Score: 102 bits (255), Expect = 1.400e-22 Identity = 53/139 (38.13%), Postives = 78/139 (56.12%), Query Frame = 1
Query: 28 WCTMAQWAVRKPPSVVLLYDLVSQ--GQQLTQVDHDLLETLGTMARRASVWEAAVHDAFCAPKDNVSTPIDMKVLHTLLAEAKHIPVSLPLEPKVVAALEDGGNRYCLCRGPNDGSFMVGCDTCEEWFHGACVKLKVRQ 438
W A + + P + + LVSQ G + + L + RA++W+A V A P P D+++L +LL A+ IP ++P E ++ +ED GNR+CLC GP+DGSFM+ CD CE W+HGACV+L Q
Sbjct: 135 WSLRALHVLSRKPKIEEIRSLVSQSEGVSFKLPETKCVRMLQSPLSRATLWQAKVVKALI-PIPGEKKPYDLELLSSLLQGARDIPYTMPEESQLWNTIEDDGNRHCLCGGPSDGSFMISCDKCEVWYHGACVELDKTQ 272
BLAST of mRNA_H-paniculata_contig27462.7514.1 vs. uniprot
Match: A0A6U6EVL1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6EVL1_9STRA) HSP 1 Score: 102 bits (255), Expect = 1.490e-22 Identity = 53/139 (38.13%), Postives = 78/139 (56.12%), Query Frame = 1
Query: 28 WCTMAQWAVRKPPSVVLLYDLVSQ--GQQLTQVDHDLLETLGTMARRASVWEAAVHDAFCAPKDNVSTPIDMKVLHTLLAEAKHIPVSLPLEPKVVAALEDGGNRYCLCRGPNDGSFMVGCDTCEEWFHGACVKLKVRQ 438
W A + + P + + LVSQ G + + L + RA++W+A V A P P D+++L +LL A+ IP ++P E ++ +ED GNR+CLC GP+DGSFM+ CD CE W+HGACV+L Q
Sbjct: 1643 WSLRALHVLSRKPKIEEIRSLVSQSEGVSFKLPETKCVRMLQSPLSRATLWQAKVVKALI-PIPGEKKPYDLELLSSLLQGARDIPYTMPEESQLWNTIEDDGNRHCLCGGPSDGSFMISCDKCEVWYHGACVELDKTQ 1780
BLAST of mRNA_H-paniculata_contig27462.7514.1 vs. uniprot
Match: A0A7S1YRU6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YRU6_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 2.810e-21 Identity = 50/135 (37.04%), Postives = 75/135 (55.56%), Query Frame = 1
Query: 28 WCTMAQWAVRKPPSVVLLYDLVSQGQQ--LTQVDHDLLETLGTMARRASVWEAAVHDAFCAPKDNVSTPIDMKVLHTLLAEAKHIPVSLPLEPKVVAALEDGGNRYCLCRGPNDGSFMVGCDTCEEWFHGACVKL 426
WC A + + P + LVSQ + + + L +M RAS+W+A V A AP P D+ +L L A A+ IP+ + E ++ +ED G R+C+C GP+DGSFM+GCD C+ W+HG C++L
Sbjct: 199 WCLRAFTILARKPRNEEIKSLVSQSENNGFKLPEEKSVRMLRSMLNRASLWQAKVKKAL-APFPGEKKPFDVGLLKELKAGAREIPMIMAEEAQLSHTIEDNGARHCVCGGPSDGSFMLGCDQCDRWYHGTCLQL 332
BLAST of mRNA_H-paniculata_contig27462.7514.1 vs. uniprot
Match: K0TMN3_THAOC (PHD domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TMN3_THAOC) HSP 1 Score: 98.2 bits (243), Expect = 3.300e-21 Identity = 49/133 (36.84%), Postives = 77/133 (57.89%), Query Frame = 1
Query: 49 AVRKPPSVVLLYDLVS--QGQQLTQVDHDLLETLGTMARRASVWEAAVHDAFCAPKDNVSTPIDMKVLHTLLAEAKHIPVSLPLEPKVVAALEDGGNRYCLCRGPNDGSFMVGCDTCEEWFHGACVKLKVRQS 441
AV++ P V + L++ + + + + L +++ RA +W+A AP D+ +L +L K IP+ LP E +V +EDGG+R+C+C GP+DGSFM+GCD+C+ WFHG KLK+R S
Sbjct: 3 AVKQRPHVGEIRALLATIESGRFKMTESRCVRMLKSLSSRALIWQAKAKKCL-APIPGEKRKYDVAMLKVILKAVKQIPIILPEEVRVWNTIEDGGHRHCVCGGPSDGSFMMGCDSCDRWFHGYVPKLKLRTS 134
BLAST of mRNA_H-paniculata_contig27462.7514.1 vs. uniprot
Match: A0A7R9U4V9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4V9_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 1.110e-20 Identity = 56/152 (36.84%), Postives = 78/152 (51.32%), Query Frame = 1
Query: 13 LRVLLWCTMAQWAVRKPPSVVLLYDLVSQGQQLTQVDHDLLETLGTMARRASVW----EAAVHDAFCAPKDNVST------------PIDMKVLHTLLAEAKHIPVSLPLEPKVVAALEDGGNRYCLCRGPNDGSFMVGCDTCEEWFHGACV 420
LRV+ WC + + PS+ +L +VS+G L + L L ++ +R W E + +P + ++ P+D+ L L E IPVS K AALED G R+CLC PNDG+FM+GCD+CEEWFHG CV
Sbjct: 1321 LRVVQWCVYCLRQLVRRPSIRVLRSIVSRGSVLPLPNPKPLRYLESLLKRCVAWREQYERVIQGPRYSPLNGAASRMAHPGRSADEKPVDLARLEALTKERVGIPVSGRDVEKCQAALEDEGKRWCLCGRPNDGAFMIGCDSCEEWFHGPCV 1472
BLAST of mRNA_H-paniculata_contig27462.7514.1 vs. uniprot
Match: A0A7S3XNG4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNG4_HETAK) HSP 1 Score: 91.7 bits (226), Expect = 1.550e-19 Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = 1
Query: 130 LLETLGTMARRASVWEAAVHDAFCAPKDNVSTPIDMKVLHTLLAEAKHIPVSLPLEPKVVAALEDGGNRYCLCRGPNDGSFMVGCDTCEEWFHGACVKL 426
+L+ L + RA+ W+ V F AP + P ++ L L A+++PV+ E LEDGG+RYC+CRGPNDGSFMV CD C+ W+HG CV +
Sbjct: 29 VLQALQELVSRATDWQGEVR-RFLAPGG--ARPYNLPALAALYEGARYLPVATRQEDIAQEVLEDGGHRYCVCRGPNDGSFMVQCDKCDAWYHGKCVNV 124 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27462.7514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig27462.7514.1 >prot_H-paniculata_contig27462.7514.1 ID=prot_H-paniculata_contig27462.7514.1|Name=mRNA_H-paniculata_contig27462.7514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp MLCSLRVLLWCTMAQWAVRKPPSVVLLYDLVSQGQQLTQVDHDLLETLGTback to top mRNA from alignment at H-paniculata_contig27462:1291..1737+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig27462.7514.1 ID=mRNA_H-paniculata_contig27462.7514.1|Name=mRNA_H-paniculata_contig27462.7514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=447bp|location=Sequence derived from alignment at H-paniculata_contig27462:1291..1737+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig27462:1291..1737+ >mRNA_H-paniculata_contig27462.7514.1 ID=mRNA_H-paniculata_contig27462.7514.1|Name=mRNA_H-paniculata_contig27462.7514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig27462:1291..1737+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |