mRNA_H-paniculata_contig27462.7514.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27462.7514.1
Unique NamemRNA_H-paniculata_contig27462.7514.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig27462.7514.1 vs. uniprot
Match: D7FR56_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR56_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 3.280e-70
Identity = 112/143 (78.32%), Postives = 125/143 (87.41%), Query Frame = 1
Query:    1 MLCSLRVLLWCTMAQWAVRKPPSVVLLYDLVSQGQQLTQVDHDLLETLGTMARRASVWEAAVHDAFCAPKDNVSTPIDMKVLHTLLAEAKHIPVSLPLEPKVVAALEDGGNRYCLCRGPNDGSFMVGCDTCEEWFHGACVKLK 429
            MLCSLRVLLWCTMAQWAVRKPPSV+LLYDLVSQG QLTQVDH+LLETLG MA+RAS+WEA+V DAF  P +NV + ID+  L  LL EAKHIPV L LEPKVVAAL+DGGNRYCLCRGPNDG+FMV CD C++WFHG+CV LK
Sbjct: 1285 MLCSLRVLLWCTMAQWAVRKPPSVILLYDLVSQGSQLTQVDHNLLETLGHMAKRASLWEASVRDAFRGPAENVDSLIDVDTLQKLLEEAKHIPVLLSLEPKVVAALDDGGNRYCLCRGPNDGTFMVQCDDCDQWFHGSCVNLK 1427          
BLAST of mRNA_H-paniculata_contig27462.7514.1 vs. uniprot
Match: A0A7S2FB18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FB18_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.490e-28
Identity = 54/121 (44.63%), Postives = 75/121 (61.98%), Query Frame = 1
Query:   64 PSVVLLYDLVSQGQQLTQVDHDLLETLGTMARRASVWEAAVHDAFCAPKDNVSTPIDMKVLHTLLAEAKHIPVSLPLEPKVVAALEDGGNRYCLCRGPNDGSFMVGCDTCEEWFHGACVKL 426
            P + +L+ LVS+G  L ++D  ++ TL  + +RA  W +  H     P+  V    DM +L  L  EA  IPV +P + +V + +EDGG RYCLCRG +DG FM+GCD CEEWFHG CV +
Sbjct:    3 PRLEVLHALVSRGMDL-RIDESVMATLRGLLQRAQDWSSTAHHELSKPEPAV---FDMPLLTKLKEEALTIPVRIPEDRRVTSVIEDGGGRYCLCRGASDGGFMIGCDFCEEWFHGKCVNV 119          
BLAST of mRNA_H-paniculata_contig27462.7514.1 vs. uniprot
Match: A0A835YJI1_9STRA (PLU-1-like protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJI1_9STRA)

HSP 1 Score: 115 bits (288), Expect = 5.400e-27
Identity = 62/158 (39.24%), Postives = 84/158 (53.16%), Query Frame = 1
Query:   13 LRVLLWCTMAQWAVRKPPSVVLLYDLVSQGQQLTQVDHDLLETLGTMARRASVWEAAVHDAFCAPKDNVSTP-------------------IDMKVLHTLLAEA-KHIPVSLPLEPKVVAALEDGGNRYCLCRGPNDGSFMVGCDTCEEWFHGACVKL 426
            LRV++WC + QW++R  PS   +  L  Q + L   D  L E L  + RRA  + AAV D F AP + + T                    ID+K L  L+    + +P+    + +  AA+EDGG RYC+CRGPNDG FM+ CD CEEWFHG C  +
Sbjct: 2238 LRVVVWCAIMQWSLRARPSHYDIGPLSQQVKALKLTDPALAEVLEVIDRRARQYGAAVKDLFKAPTEQMVTKKNEPXXXXXXXXGGATADRIDLKKLQQLVERMERELPIDTKADIQARAAMEDGGYRYCVCRGPNDGRFMIQCDNCEEWFHGGCANI 2395          
BLAST of mRNA_H-paniculata_contig27462.7514.1 vs. uniprot
Match: B8BTQ0_THAPS (PHD-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTQ0_THAPS)

HSP 1 Score: 101 bits (252), Expect = 3.250e-23
Identity = 44/95 (46.32%), Postives = 65/95 (68.42%), Query Frame = 1
Query:  142 LGTMARRASVWEAAVHDAFCAPKDNVSTPIDMKVLHTLLAEAKHIPVSLPLEPKVVAALEDGGNRYCLCRGPNDGSFMVGCDTCEEWFHGACVKL 426
            L +M+ RA +W+A    A  A K   + P DM +L  LL  AK IPV++P E ++++ LED G R+C+C GP+DGS M+GCD C+ W+HG+C+K+
Sbjct:    2 LKSMSSRALIWQAKAKKALLA-KAGSTQPFDMVLLKELLFAAKQIPVTMPEEARILSTLEDRGLRHCVCGGPSDGSLMLGCDNCDRWYHGSCMKV 95          
BLAST of mRNA_H-paniculata_contig27462.7514.1 vs. uniprot
Match: A0A6U6EWH2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6EWH2_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.400e-22
Identity = 53/139 (38.13%), Postives = 78/139 (56.12%), Query Frame = 1
Query:   28 WCTMAQWAVRKPPSVVLLYDLVSQ--GQQLTQVDHDLLETLGTMARRASVWEAAVHDAFCAPKDNVSTPIDMKVLHTLLAEAKHIPVSLPLEPKVVAALEDGGNRYCLCRGPNDGSFMVGCDTCEEWFHGACVKLKVRQ 438
            W   A   + + P +  +  LVSQ  G      +   +  L +   RA++W+A V  A   P      P D+++L +LL  A+ IP ++P E ++   +ED GNR+CLC GP+DGSFM+ CD CE W+HGACV+L   Q
Sbjct:  135 WSLRALHVLSRKPKIEEIRSLVSQSEGVSFKLPETKCVRMLQSPLSRATLWQAKVVKALI-PIPGEKKPYDLELLSSLLQGARDIPYTMPEESQLWNTIEDDGNRHCLCGGPSDGSFMISCDKCEVWYHGACVELDKTQ 272          
BLAST of mRNA_H-paniculata_contig27462.7514.1 vs. uniprot
Match: A0A6U6EVL1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6EVL1_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.490e-22
Identity = 53/139 (38.13%), Postives = 78/139 (56.12%), Query Frame = 1
Query:   28 WCTMAQWAVRKPPSVVLLYDLVSQ--GQQLTQVDHDLLETLGTMARRASVWEAAVHDAFCAPKDNVSTPIDMKVLHTLLAEAKHIPVSLPLEPKVVAALEDGGNRYCLCRGPNDGSFMVGCDTCEEWFHGACVKLKVRQ 438
            W   A   + + P +  +  LVSQ  G      +   +  L +   RA++W+A V  A   P      P D+++L +LL  A+ IP ++P E ++   +ED GNR+CLC GP+DGSFM+ CD CE W+HGACV+L   Q
Sbjct: 1643 WSLRALHVLSRKPKIEEIRSLVSQSEGVSFKLPETKCVRMLQSPLSRATLWQAKVVKALI-PIPGEKKPYDLELLSSLLQGARDIPYTMPEESQLWNTIEDDGNRHCLCGGPSDGSFMISCDKCEVWYHGACVELDKTQ 1780          
BLAST of mRNA_H-paniculata_contig27462.7514.1 vs. uniprot
Match: A0A7S1YRU6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YRU6_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.810e-21
Identity = 50/135 (37.04%), Postives = 75/135 (55.56%), Query Frame = 1
Query:   28 WCTMAQWAVRKPPSVVLLYDLVSQGQQ--LTQVDHDLLETLGTMARRASVWEAAVHDAFCAPKDNVSTPIDMKVLHTLLAEAKHIPVSLPLEPKVVAALEDGGNRYCLCRGPNDGSFMVGCDTCEEWFHGACVKL 426
            WC  A   + + P    +  LVSQ +       +   +  L +M  RAS+W+A V  A  AP      P D+ +L  L A A+ IP+ +  E ++   +ED G R+C+C GP+DGSFM+GCD C+ W+HG C++L
Sbjct:  199 WCLRAFTILARKPRNEEIKSLVSQSENNGFKLPEEKSVRMLRSMLNRASLWQAKVKKAL-APFPGEKKPFDVGLLKELKAGAREIPMIMAEEAQLSHTIEDNGARHCVCGGPSDGSFMLGCDQCDRWYHGTCLQL 332          
BLAST of mRNA_H-paniculata_contig27462.7514.1 vs. uniprot
Match: K0TMN3_THAOC (PHD domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TMN3_THAOC)

HSP 1 Score: 98.2 bits (243), Expect = 3.300e-21
Identity = 49/133 (36.84%), Postives = 77/133 (57.89%), Query Frame = 1
Query:   49 AVRKPPSVVLLYDLVS--QGQQLTQVDHDLLETLGTMARRASVWEAAVHDAFCAPKDNVSTPIDMKVLHTLLAEAKHIPVSLPLEPKVVAALEDGGNRYCLCRGPNDGSFMVGCDTCEEWFHGACVKLKVRQS 441
            AV++ P V  +  L++  +  +    +   +  L +++ RA +W+A       AP        D+ +L  +L   K IP+ LP E +V   +EDGG+R+C+C GP+DGSFM+GCD+C+ WFHG   KLK+R S
Sbjct:    3 AVKQRPHVGEIRALLATIESGRFKMTESRCVRMLKSLSSRALIWQAKAKKCL-APIPGEKRKYDVAMLKVILKAVKQIPIILPEEVRVWNTIEDGGHRHCVCGGPSDGSFMMGCDSCDRWFHGYVPKLKLRTS 134          
BLAST of mRNA_H-paniculata_contig27462.7514.1 vs. uniprot
Match: A0A7R9U4V9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4V9_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.110e-20
Identity = 56/152 (36.84%), Postives = 78/152 (51.32%), Query Frame = 1
Query:   13 LRVLLWCTMAQWAVRKPPSVVLLYDLVSQGQQLTQVDHDLLETLGTMARRASVW----EAAVHDAFCAPKDNVST------------PIDMKVLHTLLAEAKHIPVSLPLEPKVVAALEDGGNRYCLCRGPNDGSFMVGCDTCEEWFHGACV 420
            LRV+ WC      + + PS+ +L  +VS+G  L   +   L  L ++ +R   W    E  +     +P +  ++            P+D+  L  L  E   IPVS     K  AALED G R+CLC  PNDG+FM+GCD+CEEWFHG CV
Sbjct: 1321 LRVVQWCVYCLRQLVRRPSIRVLRSIVSRGSVLPLPNPKPLRYLESLLKRCVAWREQYERVIQGPRYSPLNGAASRMAHPGRSADEKPVDLARLEALTKERVGIPVSGRDVEKCQAALEDEGKRWCLCGRPNDGAFMIGCDSCEEWFHGPCV 1472          
BLAST of mRNA_H-paniculata_contig27462.7514.1 vs. uniprot
Match: A0A7S3XNG4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNG4_HETAK)

HSP 1 Score: 91.7 bits (226), Expect = 1.550e-19
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = 1
Query:  130 LLETLGTMARRASVWEAAVHDAFCAPKDNVSTPIDMKVLHTLLAEAKHIPVSLPLEPKVVAALEDGGNRYCLCRGPNDGSFMVGCDTCEEWFHGACVKL 426
            +L+ L  +  RA+ W+  V   F AP    + P ++  L  L   A+++PV+   E      LEDGG+RYC+CRGPNDGSFMV CD C+ W+HG CV +
Sbjct:   29 VLQALQELVSRATDWQGEVR-RFLAPGG--ARPYNLPALAALYEGARYLPVATRQEDIAQEVLEDGGHRYCVCRGPNDGSFMVQCDKCDAWYHGKCVNV 124          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27462.7514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR56_ECTSI3.280e-7078.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2FB18_9STRA1.490e-2844.63Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A835YJI1_9STRA5.400e-2739.24PLU-1-like protein-domain-containing protein n=1 T... [more]
B8BTQ0_THAPS3.250e-2346.32PHD-type domain-containing protein n=1 Tax=Thalass... [more]
A0A6U6EWH2_9STRA1.400e-2238.13Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6U6EVL1_9STRA1.490e-2238.13Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1YRU6_9STRA2.810e-2137.04Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K0TMN3_THAOC3.300e-2136.84PHD domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7R9U4V9_9STRA1.110e-2036.84Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S3XNG4_HETAK1.550e-1943.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27462contigH-paniculata_contig27462:1291..1737 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score239.2
Seed ortholog evalue1.2e-60
Seed eggNOG ortholog2880.D7FR56
Preferred nameCTF1
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005102,GO:0005125,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0009966,GO:0009987,GO:0010469,GO:0010646,GO:0023051,GO:0023052,GO:0030545,GO:0048018,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0065009,GO:0098772
EggNOG free text desc.demethylase
EggNOG OGsKOG1633@1,KOG1633@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size447
Cds size447
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929828.6060064-CDS-H-paniculata_contig27462:1290..17371622929828.6060064-CDS-H-paniculata_contig27462:1290..1737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27462 1291..1737 +
1691481029.3591783-CDS-H-paniculata_contig27462:1290..17371691481029.3591783-CDS-H-paniculata_contig27462:1290..1737Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27462 1291..1737 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27462.7514.1prot_H-paniculata_contig27462.7514.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27462 1291..1737 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27462.7514.1

>prot_H-paniculata_contig27462.7514.1 ID=prot_H-paniculata_contig27462.7514.1|Name=mRNA_H-paniculata_contig27462.7514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
MLCSLRVLLWCTMAQWAVRKPPSVVLLYDLVSQGQQLTQVDHDLLETLGT
MARRASVWEAAVHDAFCAPKDNVSTPIDMKVLHTLLAEAKHIPVSLPLEP
KVVAALEDGGNRYCLCRGPNDGSFMVGCDTCEEWFHGACVKLKVRQSVD
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mRNA from alignment at H-paniculata_contig27462:1291..1737+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27462.7514.1 ID=mRNA_H-paniculata_contig27462.7514.1|Name=mRNA_H-paniculata_contig27462.7514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=447bp|location=Sequence derived from alignment at H-paniculata_contig27462:1291..1737+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCTGCAGTTTGAGAGTGCTGCTGTGGTGTACCATGGCGCAGTGGGC AGTGCGCAAGCCCCCATCTGTCGTACTTTTGTACGACTTGGTGTCACAGG GGCAGCAGCTGACTCAGGTTGATCACGACCTGCTGGAGACCCTCGGTACG ATGGCCAGGCGAGCTTCAGTGTGGGAGGCAGCCGTCCATGACGCTTTTTG CGCTCCCAAGGACAATGTGTCCACACCCATCGACATGAAGGTTCTTCACA CTCTCTTGGCAGAGGCCAAACACATTCCTGTCAGCCTGCCCCTGGAGCCG AAGGTAGTGGCAGCCTTGGAGGATGGGGGGAACAGATACTGCTTGTGTCG AGGCCCAAATGACGGTTCGTTCATGGTTGGGTGCGACACTTGCGAAGAAT GGTTTCACGGGGCATGTGTAAAGCTGAAGGTAAGACAATCGGTGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig27462:1291..1737+

>mRNA_H-paniculata_contig27462.7514.1 ID=mRNA_H-paniculata_contig27462.7514.1|Name=mRNA_H-paniculata_contig27462.7514.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig27462:1291..1737+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCTGCAGTTTGAGAGTGCTGCTGTGGTGTACCATGGCGCAGTGGGC
AGTGCGCAAGCCCCCATCTGTCGTACTTTTGTACGACTTGGTGTCACAGG
GGCAGCAGCTGACTCAGGTTGATCACGACCTGCTGGAGACCCTCGGTACG
ATGGCCAGGCGAGCTTCAGTGTGGGAGGCAGCCGTCCATGACGCTTTTTG
CGCTCCCAAGGACAATGTGTCCACACCCATCGACATGAAGGTTCTTCACA
CTCTCTTGGCAGAGGCCAAACACATTCCTGTCAGCCTGCCCCTGGAGCCG
AAGGTAGTGGCAGCCTTGGAGGATGGGGGGAACAGATACTGCTTGTGTCG
AGGCCCAAATGACGGTTCGTTCATGGTTGGGTGCGACACTTGCGAAGAAT
GGTTTCACGGGGCATGTGTAAAGCTGAAGGTAAGACAATCGGTGGATATG
CTCTGCAGTTTGAGAGTGCTGCTGTGGTGTACCATGGCGCAGTGGGCAGT
GCGCAAGCCCCCATCTGTCGTACTTTTGTACGACTTGGTGTCACAGGGGC
AGCAGCTGACTCAGGTTGATCACGACCTGCTGGAGACCCTCGGTACGATG
GCCAGGCGAGCTTCAGTGTGGGAGGCAGCCGTCCATGACGCTTTTTGCGC
TCCCAAGGACAATGTGTCCACACCCATCGACATGAAGGTTCTTCACACTC
TCTTGGCAGAGGCCAAACACATTCCTGTCAGCCTGCCCCTGGAGCCGAAG
GTAGTGGCAGCCTTGGAGGATGGGGGGAACAGATACTGCTTGTGTCGAGG
CCCAAATGACGGTTCGTTCATGGTTGGGTGCGACACTTGCGAAGAATGGT
TTCACGGGGCATGTGTAAAGCTGAAGGTAAGACAATCGGTGGAT
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