mRNA_H-paniculata_contig2745.7512.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2745.7512.1
Unique NamemRNA_H-paniculata_contig2745.7512.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2745.7512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2745contigH-paniculata_contig2745:11704..14250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size1375
Cds size1374
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929828.3371148-CDS-H-paniculata_contig2745:11704..125831622929828.3371148-CDS-H-paniculata_contig2745:11704..12583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2745 11705..12583 -
1691481029.1957493-CDS-H-paniculata_contig2745:11704..125831691481029.1957493-CDS-H-paniculata_contig2745:11704..12583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2745 11705..12583 -
1622929828.3514316-CDS-H-paniculata_contig2745:13755..142501622929828.3514316-CDS-H-paniculata_contig2745:13755..14250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2745 13756..14250 -
1691481029.2042696-CDS-H-paniculata_contig2745:13755..142501691481029.2042696-CDS-H-paniculata_contig2745:13755..14250Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2745 13756..14250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2745.7512.1prot_H-paniculata_contig2745.7512.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2745 11705..14250 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2745.7512.1

>prot_H-paniculata_contig2745.7512.1 ID=prot_H-paniculata_contig2745.7512.1|Name=mRNA_H-paniculata_contig2745.7512.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=458bp
CHCLLLPGRDSLPAFPDRFPPRDIAMRALRKRRLLLDTLTILATALSAAM
VRAFTVAPTPPRRPPPLLPLEKVNSAFNCQHSLLPRCRGAAKDCDPRTSP
SSREYSCCGRRPAVFRLEASRLAGGLSSCAMERGSAFGGGGVGGRSALLA
ATITDHVACASVSGKSGSTGATQANKALGDKVRKGRARMAKAVPGEQPFQ
PKEALKPTAAAAAVVAATATALPVVRIQIDDKTERALKTQKTATKSSIAS
PATESPLTERIPKETPRTAALERRQSKRQLAAATATVVATEPSSEKQEGK
KPGSESSSSVSPPSKRRANSPTPSSKAEQDAVIAKRRAKKSKAVQSSVAQ
TKAVQNKLAQKRAAQQRKKETAMIYTQQQQQLQGSEGGIDEPAVPELGKE
ARPRAEDWLIGGLEASGGQPCAGNSRPLGGQKEEKKLLQTEEEDLAVRVD
QEGEGEGG
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mRNA from alignment at H-paniculata_contig2745:11704..14250-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2745.7512.1 ID=mRNA_H-paniculata_contig2745.7512.1|Name=mRNA_H-paniculata_contig2745.7512.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2547bp|location=Sequence derived from alignment at H-paniculata_contig2745:11704..14250- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTCACTGTCTTCTCCTGCCAGGCAGGGATTCCCTGCCTGCTTTTCCTGA
TCGATTTCCGCCGCGAGACATTGCGATGCGGGCCCTACGAAAGAGGCGAT
TGCTACTCGACACCCTCACTATCCTCGCGACCGCGTTGTCTGCGGCGATG
GTGCGGGCGTTTACCGTGGCACCCACACCTCCCCGTCGTCCGCCGCCGCT
TTTGCCCTTGGAAAAAGTCAACTCTGCCTTCAACTGCCAGCACAGCCTGT
TGCCGCGGTGTCGTGGTGCTGCGAAAGACTGTGATCCGCGTACTTCACCG
TCAAGCCGGGAGTATAGCTGTTGTGGCAGGAGGCCTGCGGTATTTCGGTT
AGAGGCGTCTCGGCTCGCGGGCGGTCTGTCGTCGTGTGCGATGGAGAGAG
GGTCAGCTTTCGGTGGGGGCGGAGTGGGCGGGCGGAGCGCGCTGCTAGCC
GCCACCATAACCGATCATGTAGCGTGTGCGAGCGTCAGTGGGAAGGTATG
TGTGTAGAGAGAGAAAGTGAGGGCGAGCGCGCCGGGGGTAATACACGGCA
ACAAAAGGCTACAGTTGCCTTGGAACTATCGCTTTGGATCAAAACCCACA
AGAGATTGTTGTAGCAAGTCAAACACATGATCCCTGCTGTTCACACATCA
CTAACCGTACATGCACCAGCAGCGCTACTGTACTGTACCGTTCTGACAAA
CCAACTGATGTTTAAACCTGTATTGTGTAATGTGAGCATCACAACGGCGG
CGCCCACCAGCATTATGCACAGCTAGGCAGCAGATGTTGGAGCAGCAACC
GTAGTTTCATCGTCGCTACTGAAATTACTCGCGGCTGCATTCTCATCAGT
GGTGTATAGATATGTATGCCGTGTGCCGTGTGCTCTTCGTCGGGAGGTAG
GCAGCAAAGACGACGTTAAAAGGGATCTAGTACGCAGATGGGAGACAAAA
CCGACACTGGAGGTGACTACCAGAGTTGCAAGACTAGACAAGTTCTTGGC
CCCAGTTTGAGACGGCTAGGGACCAAGGATGAGGGCTACGATCCGGGTTG
GACTTAGGGTTACGCAGCTTCACCATGCCCATGTATTCGCCACAAGAACC
AAAACTCCAATGGATGGTTTCGACAGGGCTCTTTCTGAGCAAAAGCGGCT
CGACACTGCACACTTTCGTGTTCGGGTACAGCACAGAGAGCCTGTGCCGC
ACTGATGAACACATTTTTCTCGCAGATAAAGCGTGCTCGATCACTCCAAG
AACAACCGAAGCTTCTCCACCCTCGTAGCGATTTGTTTCGAATATGGTTT
TCTTGCAAAACTTCACATCATGCTGCTGGTGACACCGATTGCTCTGTTGT
TGGGGAAGATGGGGTAGAGGTAATGTCGTTCGATAGAGGTGTTACTTCGG
TAAGCCAAAGCAGGGAATTTGAATCTCCAGCAGAAGATCCAGTCCAAAGA
AAGCTTCCATTCAGAGGTTACCCTGAAACTGTGTGTTGTACCGTTAGGAG
CGGTCCTGGTTGTATGTTTCGATGCGAGCCGCGTAAAATCAGCAAATTCA
CACAGGGGACGGGGAAATGACGAACTGATGAAACGAATTGGATTATGACG
TTTTTGCAAATATATACACCTACCGACTGCTGCTAATGAAAAATAATTAC
CCGACCACCCCCAGTAGTCGGGCTCAACCGGCGCGACCCAGGCGAATAAA
GCACTAGGGGATAAGGTGAGGAAGGGAAGAGCGCGCATGGCAAAAGCGGT
GCCAGGAGAGCAGCCGTTTCAGCCGAAGGAAGCATTAAAGCCAACAGCGG
CAGCCGCAGCAGTGGTGGCGGCGACGGCGACAGCTTTACCAGTGGTGAGA
ATTCAGATAGATGATAAGACGGAGAGAGCACTGAAGACGCAGAAGACGGC
GACAAAGTCTTCCATTGCCTCGCCGGCGACAGAGTCGCCGCTAACAGAAA
GGATCCCGAAAGAGACACCGAGAACGGCGGCGCTAGAGCGGCGACAATCA
AAGCGGCAGCTTGCTGCTGCTACTGCGACGGTGGTGGCAACGGAGCCGTC
GTCGGAAAAGCAGGAGGGAAAGAAACCGGGATCGGAGAGTAGTAGCAGCG
TGTCGCCGCCGTCGAAACGGCGAGCGAACTCACCAACGCCGTCTTCAAAA
GCAGAGCAGGATGCCGTGATAGCCAAGAGACGAGCGAAGAAGTCGAAAGC
GGTCCAGAGCAGCGTGGCTCAAACGAAGGCCGTGCAGAACAAGCTGGCCC
AGAAGAGGGCCGCGCAGCAGAGGAAAAAGGAAACGGCGATGATATATACC
CAGCAGCAGCAGCAGCTACAGGGCAGCGAGGGCGGTATCGACGAGCCAGC
GGTGCCGGAGTTAGGAAAAGAGGCACGGCCACGGGCTGAGGACTGGCTGA
TTGGTGGATTAGAAGCATCAGGAGGGCAGCCATGTGCTGGGAACAGCAGG
CCGCTTGGTGGGCAGAAAGAAGAGAAGAAGCTTCTTCAGACTGAGGAAGA
GGACCTAGCGGTCAGGGTAGATCAAGAAGGAGAAGGAGAAGGAGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2745:11704..14250-

>mRNA_H-paniculata_contig2745.7512.1 ID=mRNA_H-paniculata_contig2745.7512.1|Name=mRNA_H-paniculata_contig2745.7512.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2748bp|location=Sequence derived from alignment at H-paniculata_contig2745:11704..14250- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTCACTGTCTTCTCCTGCCAGGCAGGGATTCCCTGCCTGCTTTTCCTGA
TCGATTTCCGCCGCGAGACATTGCGATGCGGGCCCTACGAAAGAGGCGAT
TGCTACTCGACACCCTCACTATCCTCGCGACCGCGTTGTCTGCGGCGATG
GTGCGGGCGTTTACCGTGGCACCCACACCTCCCCGTCGTCCGCCGCCGCT
TTTGCCCTTGGAAAAAGTCAACTCTGCCTTCAACTGCCAGCACAGCCTGT
TGCCGCGGTGTCGTGGTGCTGCGAAAGACTGTGATCCGCGTACTTCACCG
TCAAGCCGGGAGTATAGCTGTTGTGGCAGGAGGCCTGCGGTATTTCGGTT
AGAGGCGTCTCGGCTCGCGGGCGGTCTGTCGTCGTGTGCGATGGAGAGAG
GGTCAGCTTTCGGTGGGGGCGGAGTGGGCGGGCGGAGCGCGCTGCTAGCC
GCCACCATAACCGATCATGTAGCGTGTGCGAGCGTCAGTGGGAAGTGTCA
CTGTCTTCTCCTGCCAGGCAGGGATTCCCTGCCTGCTTTTCCTGATCGAT
TTCCGCCGCGAGACATTGCGATGCGGGCCCTACGAAAGAGGCGATTGCTA
CTCGACACCCTCACTATCCTCGCGACCGCGTTGTCTGCGGCGATGGTGCG
GGCGTTTACCGTGGCACCCACACCTCCCCGTCGTCCGCCGCCGCTTTTGC
CCTTGGAAAAAGTCAACTCTGCCTTCAACTGCCAGCACAGCCTGTTGCCG
CGGTGTCGTGGTGCTGCGAAAGACTGTGATCCGCGTACTTCACCGTCAAG
CCGGGAGTATAGCTGTTGTGGCAGGAGGCCTGCGGTATTTCGGTTAGAGG
CGTCTCGGCTCGCGGGCGGTCTGTCGTCGTGTGCGATGGAGAGAGGGTCA
GCTTTCGGTGGGGGCGGAGTGGGCGGGCGGAGCGCGCTGCTAGCCGCCAC
CATAACCGATCATGTAGCGTGTGCGAGCGTCAGTGGGAAGTCGGGCTCAA
CCGGCGCGACCCAGGCGAATAAAGCACTAGGGGATAAGGTGAGGAAGGGA
AGAGCGCGCATGGCAAAAGCGGTGCCAGGAGAGCAGCCGTTTCAGCCGAA
GGAAGCATTAAAGCCAACAGCGGCAGCCGCAGCAGTGGTGGCGGCGACGG
CGACAGCTTTACCAGTGGTGAGAATTCAGATAGATGATAAGACGGAGAGA
GCACTGAAGACGCAGAAGACGGCGACAAAGTCTTCCATTGCCTCGCCGGC
GACAGAGTCGCCGCTAACAGAAAGGATCCCGAAAGAGACACCGAGAACGG
CGGCGCTAGAGCGGCGACAATCAAAGCGGCAGCTTGCTGCTGCTACTGCG
ACGGTGGTGGCAACGGAGCCGTCGTCGGAAAAGCAGGAGGGAAAGAAACC
GGGATCGGAGAGTAGTAGCAGCGTGTCGCCGCCGTCGAAACGGCGAGCGA
ACTCACCAACGCCGTCTTCAAAAGCAGAGCAGGATGCCGTGATAGCCAAG
AGACGAGCGAAGAAGTCGAAAGCGGTCCAGAGCAGCGTGGCTCAAACGAA
GGCCGTGCAGAACAAGCTGGCCCAGAAGAGGGCCGCGCAGCAGAGGAAAA
AGGAAACGGCGATGATATATACCCAGCAGCAGCAGCAGCTACAGGGCAGC
GAGGGCGGTATCGACGAGCCAGCGGTGCCGGAGTTAGGAAAAGAGGCACG
GCCACGGGCTGAGGACTGGCTGATTGGTGGATTAGAAGCATCAGGAGGGC
AGCCATGTGCTGGGAACAGCAGGCCGCTTGGTGGGCAGAAAGAAGAGAAG
AAGCTTCTTCAGACTGAGGAAGAGGACCTAGCGGTCAGGGTAGATCAAGA
AGGAGAAGGAGAAGGAGGATCGGGCTCAACCGGCGCGACCCAGGCGAATA
AAGCACTAGGGGATAAGGTGAGGAAGGGAAGAGCGCGCATGGCAAAAGCG
GTGCCAGGAGAGCAGCCGTTTCAGCCGAAGGAAGCATTAAAGCCAACAGC
GGCAGCCGCAGCAGTGGTGGCGGCGACGGCGACAGCTTTACCAGTGGTGA
GAATTCAGATAGATGATAAGACGGAGAGAGCACTGAAGACGCAGAAGACG
GCGACAAAGTCTTCCATTGCCTCGCCGGCGACAGAGTCGCCGCTAACAGA
AAGGATCCCGAAAGAGACACCGAGAACGGCGGCGCTAGAGCGGCGACAAT
CAAAGCGGCAGCTTGCTGCTGCTACTGCGACGGTGGTGGCAACGGAGCCG
TCGTCGGAAAAGCAGGAGGGAAAGAAACCGGGATCGGAGAGTAGTAGCAG
CGTGTCGCCGCCGTCGAAACGGCGAGCGAACTCACCAACGCCGTCTTCAA
AAGCAGAGCAGGATGCCGTGATAGCCAAGAGACGAGCGAAGAAGTCGAAA
GCGGTCCAGAGCAGCGTGGCTCAAACGAAGGCCGTGCAGAACAAGCTGGC
CCAGAAGAGGGCCGCGCAGCAGAGGAAAAAGGAAACGGCGATGATATATA
CCCAGCAGCAGCAGCAGCTACAGGGCAGCGAGGGCGGTATCGACGAGCCA
GCGGTGCCGGAGTTAGGAAAAGAGGCACGGCCACGGGCTGAGGACTGGCT
GATTGGTGGATTAGAAGCATCAGGAGGGCAGCCATGTGCTGGGAACAGCA
GGCCGCTTGGTGGGCAGAAAGAAGAGAAGAAGCTTCTTCAGACTGAGGAA
GAGGACCTAGCGGTCAGGGTAGATCAAGAAGGAGAAGGAGAAGGAGGA
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