mRNA_H-paniculata_contig2743.7507.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2743.7507.1
Unique NamemRNA_H-paniculata_contig2743.7507.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2743.7507.1 vs. uniprot
Match: D7FRF3_ECTSI (Multifunctional pyrimidine synthesis protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF3_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 4.650e-47
Identity = 81/102 (79.41%), Postives = 88/102 (86.27%), Query Frame = 1 
Query:    1 MDTKIIAFDCGMKANIIRWYFVQEQKVTFIVVPFNYDLEKNPENIHYDGVFISNGPGDPTMCTPTIESLRWLMRSAEGSAKPIPIFGICLGNQLLALAAGAK 306
            M+T IIAFDCGMKANIIR YFV EQKVTF VVPF+YDLE NP N+ Y GVFISNGPGDPTMCT TI+SL+WLM+ A    KP+PIFGICLGNQLLALAAGAK
Sbjct:   30 METNIIAFDCGMKANIIR-YFVTEQKVTFTVVPFDYDLEANPNNVEYHGVFISNGPGDPTMCTSTIKSLKWLMKKAADGEKPVPIFGICLGNQLLALAAGAK 130
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BLAST of mRNA_H-paniculata_contig2743.7507.1 vs. uniprot
Match: A0A8J2SSL2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSL2_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.940e-33
Identity = 63/98 (64.29%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:   13 IIAFDCGMKANIIRWYFVQEQKVTFIVVPFNYDLEKNPENIHYDGVFISNGPGDPTMCTPTIESLRWLMRSAEGSAKPIPIFGICLGNQLLALAAGAK 306
            I+A DCGMK NI+R YFV+   VT IVVPF+YDLEKNP N+ +DG+F SNGPGDP+ C  TI+SL+W +      ++ +PIFGICLGNQLLALAAGAK
Sbjct:  234 IVAIDCGMKHNIVR-YFVETHDVTLIVVPFDYDLEKNPANLKWDGLFCSNGPGDPSQCRETIKSLQWAI------SRDVPIFGICLGNQLLALAAGAK 324
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BLAST of mRNA_H-paniculata_contig2743.7507.1 vs. uniprot
Match: A0A7S1BAC4_9STRA (Hypothetical protein n=4 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BAC4_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.940e-33
Identity = 63/98 (64.29%), Postives = 76/98 (77.55%), Query Frame = 1 
Query:   13 IIAFDCGMKANIIRWYFVQEQKVTFIVVPFNYDLEKNPENIHYDGVFISNGPGDPTMCTPTIESLRWLMRSAEGSAKPIPIFGICLGNQLLALAAGAK 306
            +IAFDCGMK NIIR YFV+  K+   VVP+ YDLE NP NI Y+G+F+SNGPGDPTMC  T++S+R+ ++       PIPIFGICLGNQLLALA GAK
Sbjct:  353 VIAFDCGMKYNIIR-YFVEIHKIKLTVVPYYYDLETNPSNIDYNGIFLSNGPGDPTMCPETVKSIRYALKLQP----PIPIFGICLGNQLLALATGAK 445
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BLAST of mRNA_H-paniculata_contig2743.7507.1 vs. uniprot
Match: A0A7S2YN23_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YN23_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.070e-33
Identity = 62/99 (62.63%), Postives = 76/99 (76.77%), Query Frame = 1 
Query:   10 KIIAFDCGMKANIIRWYFVQEQKVTFIVVPFNYDLEKNPENIHYDGVFISNGPGDPTMCTPTIESLRWLMRSAEGSAKPIPIFGICLGNQLLALAAGAK 306
            +IIA+DCGMK NIIR Y V   KV   VVPFNYDLE+NP+NI +DG+F+SNGPGDPTMC  TI+S+ + ++         P+FGICLGNQLL+LAAGAK
Sbjct:  223 RIIAYDCGMKYNIIR-YLVLTHKVQLTVVPFNYDLERNPDNIEWDGLFLSNGPGDPTMCPGTIKSIEYALQLEPAK----PVFGICLGNQLLSLAAGAK 316
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BLAST of mRNA_H-paniculata_contig2743.7507.1 vs. uniprot
Match: W7U0U1_9STRA (Cad protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0U1_9STRA)

HSP 1 Score: 130 bits (328), Expect = 3.610e-33
Identity = 63/97 (64.95%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:   10 KIIAFDCGMKANIIRWYFVQEQKVTFIVVPFNYDLEKNPENIHYDGVFISNGPGDPTMCTPTIESLRWLMRSAEGSAKPIPIFGICLGNQLLALAAG 300
            +I+AFDCGMK NIIR YFV+   V F VVP++YDL+ NP  + ++G+FISNGPGDPTMC  TI+SL+W M    G   P PIFGICLGNQLLALAAG
Sbjct:  273 RILAFDCGMKYNIIR-YFVKHHAVEFTVVPYDYDLQANPSKLEWEGIFISNGPGDPTMCAATIKSLQWAM----GLPTPKPIFGICLGNQLLALAAG 364
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BLAST of mRNA_H-paniculata_contig2743.7507.1 vs. uniprot
Match: K0TB25_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TB25_THAOC)

HSP 1 Score: 130 bits (326), Expect = 6.700e-33
Identity = 64/100 (64.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:    7 TKIIAFDCGMKANIIRWYFVQEQKVTFIVVPFNYDLEKNPENIHYDGVFISNGPGDPTMCTPTIESLRWLMRSAEGSAKPIPIFGICLGNQLLALAAGAK 306
            T I+A+DCGMK NIIR YFV E  V   VVPF+YDLE NP NI +DG+F+SNGPGDP MC  TI+S+++    A G   P PIFGICLGNQLL++AAGAK
Sbjct:   61 TSILAYDCGMKFNIIR-YFVDEHNVKLTVVPFDYDLEANPSNIQWDGLFLSNGPGDPNMCPQTIKSIKY----AIGLDPPRPIFGICLGNQLLSIAAGAK 155
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BLAST of mRNA_H-paniculata_contig2743.7507.1 vs. uniprot
Match: B8C8T5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C8T5_THAPS)

HSP 1 Score: 130 bits (326), Expect = 6.720e-33
Identity = 66/100 (66.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:    7 TKIIAFDCGMKANIIRWYFVQEQKVTFIVVPFNYDLEKNPENIHYDGVFISNGPGDPTMCTPTIESLRWLMRSAEGSAKPIPIFGICLGNQLLALAAGAK 306
            T I+A+DCGMK NIIR YFV   KV   VVPF+YDLE NP NI +DG+F+SNGPGDPTMC  TI+S+++    A     P PIFGICLGNQLLALAAGAK
Sbjct:  195 TNIVAYDCGMKFNIIR-YFVNTHKVRLTVVPFDYDLEANPANIPWDGLFLSNGPGDPTMCPQTIKSIQY----ALALDPPRPIFGICLGNQLLALAAGAK 289
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BLAST of mRNA_H-paniculata_contig2743.7507.1 vs. uniprot
Match: A0A836CIG0_9STRA (Multifunctional pyrimidine synthesis protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIG0_9STRA)

HSP 1 Score: 127 bits (320), Expect = 4.330e-32
Identity = 64/98 (65.31%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:    7 TKIIAFDCGMKANIIRWYFVQEQKVTFIVVPFNYDLEKNPENIHYDGVFISNGPGDPTMCTPTIESLRWLMRSAEGSAKPIPIFGICLGNQLLALAAG 300
            T+I+AFDCGMK NIIR  F ++ +V F VVPF+YDLE N + I YDGVF+SNGPGDP  C  TI SL+WLM         IPIFGICLGNQLLALAAG
Sbjct:  152 TRILAFDCGMKYNIIRC-FAEQCQVEFTVVPFDYDLEANVDGIQYDGVFVSNGPGDPVTCAQTINSLKWLMAQVPC----IPIFGICLGNQLLALAAG 244
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BLAST of mRNA_H-paniculata_contig2743.7507.1 vs. uniprot
Match: A0A7S2ECQ3_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ECQ3_TRICV)

HSP 1 Score: 127 bits (320), Expect = 4.340e-32
Identity = 63/98 (64.29%), Postives = 74/98 (75.51%), Query Frame = 1 
Query:   13 IIAFDCGMKANIIRWYFVQEQKVTFIVVPFNYDLEKNPENIHYDGVFISNGPGDPTMCTPTIESLRWLMRSAEGSAKPIPIFGICLGNQLLALAAGAK 306
            +IA+DCGMK NIIR Y V+  KV   VVPF+YDLEKNPE I ++G+F+SNGPGDP MC  T+ S+R+ M    G   P PIFGICLGNQLLALAAGA 
Sbjct:  205 VIAYDCGMKYNIIR-YLVETHKVRLTVVPFDYDLEKNPEGIEWEGLFLSNGPGDPNMCPQTVASIRYAM----GLDPPRPIFGICLGNQLLALAAGAS 297
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BLAST of mRNA_H-paniculata_contig2743.7507.1 vs. uniprot
Match: A0A7S2URU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URU4_9STRA)

HSP 1 Score: 124 bits (312), Expect = 5.140e-31
Identity = 63/98 (64.29%), Postives = 73/98 (74.49%), Query Frame = 1 
Query:   13 IIAFDCGMKANIIRWYFVQEQKVTFIVVPFNYDLEKNPENIHYDGVFISNGPGDPTMCTPTIESLRWLMRSAEGSAKPIPIFGICLGNQLLALAAGAK 306
            IIA+DCGMK NIIR Y V+  KV   VVPF+YDLE NP NI + G+F+SNGPGDPTMC  TI+S+++    A     P PIFGICLGNQLLALA GAK
Sbjct:  204 IIAYDCGMKYNIIR-YLVETHKVKLTVVPFDYDLEANPSNIEWSGMFLSNGPGDPTMCPDTIKSIKY----ALALDPPRPIFGICLGNQLLALACGAK 296
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2743.7507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRF3_ECTSI4.650e-4779.41Multifunctional pyrimidine synthesis protein n=1 T... [more]
A0A8J2SSL2_9STRA1.940e-3364.29Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1BAC4_9STRA1.940e-3364.29Hypothetical protein n=4 Tax=Corethron hystrix Tax... [more]
A0A7S2YN23_9STRA2.070e-3362.63Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
W7U0U1_9STRA3.610e-3364.95Cad protein n=2 Tax=Monodopsidaceae TaxID=425072 R... [more]
K0TB25_THAOC6.700e-3364.00Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B8C8T5_THAPS6.720e-3366.00Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A836CIG0_9STRA4.330e-3265.31Multifunctional pyrimidine synthesis protein n=1 T... [more]
A0A7S2ECQ3_TRICV4.340e-3264.29Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
A0A7S2URU4_9STRA5.140e-3164.29Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2743contigH-paniculata_contig2743:15547..16096 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.2
Seed ortholog evalue1.3e-40
Seed eggNOG ortholog2880.D7FRF3
KEGG rclassRC00002,RC00010,RC00043,RC00064,RC00632,RC02750,RC02798,RC02850,RC03314
KEGG koko:K01954,ko:K11540,ko:K11541
KEGG ReactionR00256,R00575,R01395,R01397,R01993,R10948,R10949
KEGG Pathwayko00240,ko00250,ko01100,map00240,map00250,map01100
KEGG ModuleM00051
Hectar predicted targeting categoryother localisation
GOsGO:0000050,GO:0000166,GO:0003674,GO:0003824,GO:0004070,GO:0004087,GO:0004088,GO:0004151,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005951,GO:0006082,GO:0006139,GO:0006206,GO:0006207,GO:0006520,GO:0006525,GO:0006526,GO:0006541,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009112,GO:0009987,GO:0016053,GO:0016597,GO:0016740,GO:0016741,GO:0016743,GO:0016787,GO:0016810,GO:0016812,GO:0016874,GO:0016879,GO:0016884,GO:0017076,GO:0018130,GO:0019627,GO:0019752,GO:0019856,GO:0030554,GO:0031406,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034641,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046112,GO:0046394,GO:0046483,GO:0046872,GO:0055086,GO:0071704,GO:0071941,GO:0072527,GO:0072528,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494
EggNOG free text desc.carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
EggNOG OGsCOG0458@1,KOG0370@2759
EC2.1.3.2,3.5.2.3,6.3.5.5
COG Functional cat.EF
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002
Exons2
Model size310
Cds size309
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929828.015234-CDS-H-paniculata_contig2743:15546..157991622929828.015234-CDS-H-paniculata_contig2743:15546..15799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2743 15547..15799 -
1691481029.088925-CDS-H-paniculata_contig2743:15546..157991691481029.088925-CDS-H-paniculata_contig2743:15546..15799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2743 15547..15799 -
1622929828.02962-CDS-H-paniculata_contig2743:16040..160961622929828.02962-CDS-H-paniculata_contig2743:16040..16096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2743 16041..16096 -
1691481029.098881-CDS-H-paniculata_contig2743:16040..160961691481029.098881-CDS-H-paniculata_contig2743:16040..16096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2743 16041..16096 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2743.7507.1prot_H-paniculata_contig2743.7507.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2743 15547..16096 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2743.7507.1

>prot_H-paniculata_contig2743.7507.1 ID=prot_H-paniculata_contig2743.7507.1|Name=mRNA_H-paniculata_contig2743.7507.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MDTKIIAFDCGMKANIIRWYFVQEQKVTFIVVPFNYDLEKNPENIHYDGV
FISNGPGDPTMCTPTIESLRWLMRSAEGSAKPIPIFGICLGNQLLALAAG
AKA
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mRNA from alignment at H-paniculata_contig2743:15547..16096-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2743.7507.1 ID=mRNA_H-paniculata_contig2743.7507.1|Name=mRNA_H-paniculata_contig2743.7507.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=550bp|location=Sequence derived from alignment at H-paniculata_contig2743:15547..16096- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACACGAAGATCATCGCGTTCGACTGCGGAATGAAGGCGAACATTAT
CAGGTGGTGGTCATGATCCAGTGTTCTTTTTTGGGGGGGAGGGGGAACAA
GGTTGAAAATCAGCCACGCACGAGTGGAGTGGACGTCTGACTCGATTTCA
AATGATTCGAGTGGATATAGTGTGAAGAGAACATGGGCGAGCAGCTTTAT
TTGGTTACAGGCGAATAGTGAAAAGAAAAAGAAAAAAAAAGCTTTGAAAA
ACTCTGTGTATATTTTTTTTACAGATTAAATTTTTCTTGTCGACCAGGTA
CTTCGTGCAGGAGCAAAAGGTGACCTTCATAGTGGTTCCCTTCAACTACG
ACCTTGAGAAAAACCCAGAAAATATTCATTATGACGGGGTCTTCATCAGC
AACGGGCCTGGCGATCCCACCATGTGCACCCCTACCATCGAATCTCTGAG
ATGGCTCATGCGCTCGGCGGAGGGTTCCGCGAAACCCATCCCAATCTTCG
GTATCTGTCTCGGAAATCAGCTGCTTGCCCTAGCTGCAGGCGCGAAGGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig2743:15547..16096-

>mRNA_H-paniculata_contig2743.7507.1 ID=mRNA_H-paniculata_contig2743.7507.1|Name=mRNA_H-paniculata_contig2743.7507.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig2743:15547..16096- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACACGAAGATCATCGCGTTCGACTGCGGAATGAAGGCGAACATTAT
CAGGTGATGGACACGAAGATCATCGCGTTCGACTGCGGAATGAAGGCGAA
CATTATCAGGTGGTACTTCGTGCAGGAGCAAAAGGTGACCTTCATAGTGG
TTCCCTTCAACTACGACCTTGAGAAAAACCCAGAAAATATTCATTATGAC
GGGGTCTTCATCAGCAACGGGCCTGGCGATCCCACCATGTGCACCCCTAC
CATCGAATCTCTGAGATGGCTCATGCGCTCGGCGGAGGGTTCCGCGAAAC
CCATCCCAATCTTCGGTATCTGTCTCGGAAATCAGCTGCTTGCCCTAGCT
GCAGGCGCGAAGGCAGTACTTCGTGCAGGAGCAAAAGGTGACCTTCATAG
TGGTTCCCTTCAACTACGACCTTGAGAAAAACCCAGAAAATATTCATTAT
GACGGGGTCTTCATCAGCAACGGGCCTGGCGATCCCACCATGTGCACCCC
TACCATCGAATCTCTGAGATGGCTCATGCGCTCGGCGGAGGGTTCCGCGA
AACCCATCCCAATCTTCGGTATCTGTCTCGGAAATCAGCTGCTTGCCCTA
GCTGCAGGCGCGAAGGCA
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