mRNA_H-paniculata_contig27414.7503.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27414.7503.1
Unique NamemRNA_H-paniculata_contig27414.7503.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27414.7503.1 vs. uniprot
Match: A0A835YQV2_9STRA (Nucleoside diphosphate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQV2_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 7.590e-23
Identity = 38/60 (63.33%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 NAVQSFRDTAGPWNVDMAKELRPKSIRAMYGETGARTGIHCTDLPEDGASECQFFFELMQ 180
            +AV +FR TAGPW+V+MAKELRP S+RA++G    R+G+HCT+LPEDG +ECQ+FFE++Q
Sbjct:  317 DAVATFRQTAGPWDVEMAKELRPGSLRALFGRDNVRSGVHCTELPEDGVAECQYFFEVLQ 376
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BLAST of mRNA_H-paniculata_contig27414.7503.1 vs. uniprot
Match: D7G650_ECTSI (DM10 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G650_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 7.980e-23
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 NAVQSFRDTAGPWNVDMAKELRPKSIRAMYGET-------GARTGIHCTDLPEDGASECQFFFELMQ 180
            N V +FR+ AGPW+V+MAKELRP SIR M+GE        GARTG+HCTDL EDG SEC++FFELMQ
Sbjct:  309 NVVGAFREAAGPWDVEMAKELRPNSIRGMFGEGAKDSSGGGARTGVHCTDLTEDGPSECRYFFELMQ 375
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BLAST of mRNA_H-paniculata_contig27414.7503.1 vs. uniprot
Match: A0A7S3YA09_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA09_HETAK)

HSP 1 Score: 92.8 bits (229), Expect = 4.800e-21
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    7 VQSFRDTAGPWNVDMAKELRPKSIRAMYGETGARTGIHCTDLPEDGASECQFFFELMQ 180
            V +FR TAGPW+V+MA++LRP ++RA YGE   R  +HCTDLPEDG  ECQ+FF+L+Q
Sbjct:  272 VATFRQTAGPWDVEMARDLRPATLRAKYGEDRVRNAVHCTDLPEDGVPECQYFFDLLQ 329
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BLAST of mRNA_H-paniculata_contig27414.7503.1 vs. uniprot
Match: A0A7R9U0Q1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0Q1_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.110e-20
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 NAVQSFRDTAGPWNVDMAKELRPKSIRAMYGETGARTGIHCTDLPEDGASECQFFFELM 177
            +AV++ R+  GPW+V++AKE+RP ++RA YG    R  IHCTDLPED ASEC+FFFE M
Sbjct:   78 DAVKALREAVGPWDVEIAKEIRPHTLRAKYGVDSVRKAIHCTDLPEDSASECRFFFETM 136
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BLAST of mRNA_H-paniculata_contig27414.7503.1 vs. uniprot
Match: A0A7S2XZY6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZY6_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.670e-20
Identity = 34/60 (56.67%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 NAVQSFRDTAGPWNVDMAKELRPKSIRAMYGETGARTGIHCTDLPEDGASECQFFFELMQ 180
            NAVQ+FR+TAGPW+V++A+E+RP ++RA +G++     +HCTDLPEDG  E Q+FFE++Q
Sbjct:  158 NAVQTFRETAGPWDVEIAREIRPNTLRARFGKSRIMNAVHCTDLPEDGILESQYFFEVLQ 217
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BLAST of mRNA_H-paniculata_contig27414.7503.1 vs. uniprot
Match: A0A6G0XIJ6_9STRA (DM10 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIJ6_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 9.970e-19
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 NAVQSFRDTAGPWNVDMAKELRPKSIRAMYGETGARTGIHCTDLPEDGASECQFFFELM 177
            + VQ FR+ AGPW++DMA+EL+P +IRA +G       IHCTDLPEDG  ECQ+FF+++
Sbjct:  275 DVVQRFREAAGPWDIDMARELKPSTIRARFGIDRVHNAIHCTDLPEDGVLECQYFFDIL 333
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BLAST of mRNA_H-paniculata_contig27414.7503.1 vs. uniprot
Match: A0A067BJG1_SAPPC (NDK domain-containing protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BJG1_SAPPC)

HSP 1 Score: 84.0 bits (206), Expect = 1.510e-18
Identity = 32/57 (56.14%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    7 VQSFRDTAGPWNVDMAKELRPKSIRAMYGETGARTGIHCTDLPEDGASECQFFFELM 177
            VQ FR+ AGPW++DMA+EL+P +IRA +G    +  +HCTDLPEDGA E Q+FF+++
Sbjct:  147 VQRFREIAGPWDIDMARELKPSTIRARFGVDRVQNAVHCTDLPEDGALESQYFFDIL 203
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BLAST of mRNA_H-paniculata_contig27414.7503.1 vs. uniprot
Match: A0A6A4ZXF0_9STRA (NDK domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZXF0_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.360e-18
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    7 VQSFRDTAGPWNVDMAKELRPKSIRAMYGETGARTGIHCTDLPEDGASECQFFFELM 177
            VQ FR+ AGPW++DMA+EL+P +IRA +G       +HCTDL EDGA E Q+FF+++
Sbjct:   62 VQRFREAAGPWDIDMARELKPSTIRARFGTDRVHNAVHCTDLSEDGALESQYFFDIL 118
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BLAST of mRNA_H-paniculata_contig27414.7503.1 vs. uniprot
Match: A0A7S3S6R5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3S6R5_9SPIT)

HSP 1 Score: 80.5 bits (197), Expect = 3.040e-18
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    1 NAVQSFRDTAGPWNVDMAKELRPKSIRAMYGETGARTGIHCTDLPEDGASECQFFFEL 174
            NAVQ FR+  GP + ++AK LRP ++RA +G T    G+HCTDLPEDG  EC++FF +
Sbjct:   46 NAVQKFRELCGPMDPEIAKNLRPNTLRAKFGHTRCLNGVHCTDLPEDGTLECEYFFSI 103
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BLAST of mRNA_H-paniculata_contig27414.7503.1 vs. uniprot
Match: F0YM77_AURAN (DM10 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YM77_AURAN)

HSP 1 Score: 85.1 bits (209), Expect = 3.450e-18
Identity = 32/58 (55.17%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    4 AVQSFRDTAGPWNVDMAKELRPKSIRAMYGETGARTGIHCTDLPEDGASECQFFFELM 177
            AVQ FR++ GPW+V+ AKE+RP++IRA +G  G +  +HCTDLP+DG SE ++FFE++
Sbjct:  268 AVQHFRESCGPWDVNFAKEIRPQTIRAKFGIDGVKNAVHCTDLPDDGESEVRYFFEIL 325
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27414.7503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQV2_9STRA7.590e-2363.33Nucleoside diphosphate kinase n=1 Tax=Tribonema mi... [more]
D7G650_ECTSI7.980e-2365.67DM10 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S3YA09_HETAK4.800e-2162.07Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9U0Q1_9STRA1.110e-2059.32Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2XZY6_9STRA1.670e-2056.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6G0XIJ6_9STRA9.970e-1955.93DM10 domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A067BJG1_SAPPC1.510e-1856.14NDK domain-containing protein (Fragment) n=1 Tax=S... [more]
A0A6A4ZXF0_9STRA2.360e-1854.39NDK domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A7S3S6R5_9SPIT3.040e-1853.45Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
F0YM77_AURAN3.450e-1855.17DM10 domain-containing protein n=1 Tax=Aureococcus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27414contigH-paniculata_contig27414:594..785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue3.3e-18
Seed eggNOG ortholog2880.D7G650
Preferred nameNME7
KEGG rclassRC00002
KEGG koko:K00940,ko:K02154
KEGG TC3.A.2.2
KEGG ReactionR00124,R00139,R00156,R00330,R00570,R00722,R01137,R01857,R02093,R02326,R02331,R03530,R11894,R11895
KEGG Pathwayko00190,ko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,ko04142,ko04145,ko04721,ko04966,ko05110,ko05120,ko05152,ko05165,ko05323,map00190,map00230,map00240,map00983,map01100,map01110,map01130,map04016,map04142,map04145,map04721,map04966,map05110,map05120,map05152,map05165,map05323
KEGG ModuleM00049,M00050,M00052,M00053,M00160
Hectar predicted targeting categoryother localisation
GOsGO:0003002,GO:0003341,GO:0003351,GO:0003674,GO:0003824,GO:0004550,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006139,GO:0006165,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009132,GO:0009141,GO:0009142,GO:0009799,GO:0009855,GO:0009987,GO:0010033,GO:0010970,GO:0015630,GO:0015949,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0023052,GO:0030030,GO:0030705,GO:0031503,GO:0032501,GO:0032502,GO:0033036,GO:0034097,GO:0034613,GO:0034641,GO:0034654,GO:0036064,GO:0042073,GO:0042221,GO:0042995,GO:0043113,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0046483,GO:0046907,GO:0046939,GO:0048513,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051668,GO:0051716,GO:0055086,GO:0060322,GO:0060830,GO:0060972,GO:0065007,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071840,GO:0072657,GO:0090407,GO:0099111,GO:0120025,GO:0120036,GO:0120038,GO:1901293,GO:1901360,GO:1901362,GO:1901576,GO:1990823,GO:1990830
EggNOG free text desc.Nucleoside diphosphate kinase
EggNOG OGsCOG0105@1,KOG0888@2759
Ec32 ortholog descriptionNucleoside diphosphate kinase
Ec32 orthologEc-11_005170.1
EC2.7.4.6
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929827.6690059-CDS-H-paniculata_contig27414:593..7851622929827.6690059-CDS-H-paniculata_contig27414:593..785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27414 594..785 +
1691481028.9027302-CDS-H-paniculata_contig27414:593..7851691481028.9027302-CDS-H-paniculata_contig27414:593..785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27414 594..785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27414.7503.1prot_H-paniculata_contig27414.7503.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27414 594..785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27414.7503.1

>prot_H-paniculata_contig27414.7503.1 ID=prot_H-paniculata_contig27414.7503.1|Name=mRNA_H-paniculata_contig27414.7503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
NAVQSFRDTAGPWNVDMAKELRPKSIRAMYGETGARTGIHCTDLPEDGAS
ECQFFFELMQGVH*
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mRNA from alignment at H-paniculata_contig27414:594..785+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27414.7503.1 ID=mRNA_H-paniculata_contig27414.7503.1|Name=mRNA_H-paniculata_contig27414.7503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at H-paniculata_contig27414:594..785+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGCGGTGCAATCCTTTCGCGATACAGCGGGACCATGGAACGTGGACAT
GGCCAAGGAACTAAGACCGAAGTCTATACGCGCCATGTACGGAGAAACTG
GCGCGCGAACCGGCATACATTGCACTGATCTCCCAGAGGATGGGGCGTCC
GAGTGCCAATTTTTTTTCGAGCTCATGCAGGGTGTTCACTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig27414:594..785+

>mRNA_H-paniculata_contig27414.7503.1 ID=mRNA_H-paniculata_contig27414.7503.1|Name=mRNA_H-paniculata_contig27414.7503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig27414:594..785+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGCGGTGCAATCCTTTCGCGATACAGCGGGACCATGGAACGTGGACAT
GGCCAAGGAACTAAGACCGAAGTCTATACGCGCCATGTACGGAGAAACTG
GCGCGCGAACCGGCATACATTGCACTGATCTCCCAGAGGATGGGGCGTCC
GAGTGCCAATTTTTTTTCGAGCTCATGCAGGGTGTTCACTGAAACGCGGT
GCAATCCTTTCGCGATACAGCGGGACCATGGAACGTGGACATGGCCAAGG
AACTAAGACCGAAGTCTATACGCGCCATGTACGGAGAAACTGGCGCGCGA
ACCGGCATACATTGCACTGATCTCCCAGAGGATGGGGCGTCCGAGTGCCA
ATTTTTTTTCGAGCTCATGCAGGGTGTTCACTGA
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